Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001977

Physical Location & Seq

Genomic Coordinates Reverse (-)

8906471 .. 8907969

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTAAGTTCACCATTTCCAGCTGCAGTTTCCCCTTCATTTTGCTCCTCTTCCCCTTTTACTCCCTAACCCTAACCCTAATTGCAAAACCCATTTCTTCTTCTTCGCTCCAAGCCCTTAACACCACCAACCCCCAAAATTTCGATTCCGAAATTGCCCTCTTCGGCGACGCCGCGGACGGCGGCTCTTACGTGAACCTCACGCGCGGATCGGCCTCAAGCTCCGGTCTTCTCCTCCGCCGAAAGCCCTTTAAAGTCGCGGACGCGAATCTCAGCAATCCGGCGTCGTTTTCGTCCGAATTGATCTTCTCGATCACGCCCGGCAACGGCGATGGTATTGTCGTCGTTTTCGTTCCCGGCGATTTGGGCTCGAGGTTCTCCGGTAAGGGCCCGTTTGGGCTTGACGGTGAGAATCGATTTCTGGGTATTGAATTTGATACTGAAATGAATGAAAATGTGAATGATGTGAATGCGAATCATATAGGGGTGAATGTGGGTAGCTTTGTATCTGTGACTGTTGGGAATGTTACTGCATTGAATTTGGTGCTTAATAGTGGAGAAAAGATGAAATCTTGGATTGATTATGATGCTAGTTCGAAAAGATTAGAGATAAGGTTGAGTAAGTTGGGTGAACCAAGGCCTTATAATCCGATTGTTGCATATGGCATAGATTTGTTGGCAATGTGGAAGGATAAGGATGTGTATGTAGGGATAAGCTCGTCGAATTCGAATAATGGCAGTTCCTCGCAAATTTGTAGTGTGTATTCTTGGAGTTTTAGGATGAGAAAGGTTCCAAGGTTGCATTCGCTTCCGGTGAATCCGAGGGGTTATTTGGATGATCAGCATGGTGGAAATCCGGGTCTGCATAAGAGGATGGCTTGTCCATTGTCAATTCTTGCTGGGATTATATTCATGACTGGGTGTGGAGCTCTGGTTTCATTTGTCATGCTGTTTTTGTGGGCTATAATTGTTAACAGGCACACGGTTTTCCCTGCTGAAGTGCTCCCAGATGAGTTTCCGGTGAAGCCTAATCCTACGGATTTCAGGTATGAGAAGATCAGTGTAGTTGTAGAGGAAGATGCAGATGCAGATGGTGTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

367

Amino Acids

39.82

Weight (kDa)

5.78

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_L-type_dom	PF18483	44 - 249	2.7e-07	Legume lectin beta-barrel domain
Lectin_legB	PF00139	47 - 265	1.4e-41	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09035 AT3G09190 AT5G01090
fragaria_vesca	FvH4_6g12300 FvH4_7g23770
malus_domestica	MD01G1145100.v1.1 MD07G1165700.v1.1 MD07G1211800.v1.1 MD12G1085400.v1.1
prunus_persica	Prupe.2G244400_v2.0.a1 Prupe.6G268200_v2.0.a1
pyrus_communis	pycom01g16450 pycom04g13040 pycom04g13050 pycom07g19500 pycom12g08030 pycom12g15000
rosa_chinensis	RchiOBHm_Chr1g0369101 RchiOBHm_Chr3g0464131
rosa_laevigata	RLG00000024720 RLG00000027158
rosa_multiflora	Rmu_sc0001552.1_g000037 Rmu_sc0003337.1_g000012 Rmu_sc0004250.1_g000019 Rmu_sc0010401.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288000 Rroxscaffold_6G00415970
rosa_rugosa	Rorug01G0348100 Rorug03G0070700
rosa_samantha	Rh1AG354900 Rh1BG318200 Rh1BG335600 Rh1CG332600 Rh1DG348900 Rh2BG629000 Rh2CG320200 Rh2DG640800 Rh3BG132100 Rh3CG134300 Rh3DG133300 Rh4DG353800 Rh6BG239800 Rh7DG015800
rosa_wichuraiana	Rw1G031320 Rw3G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AccII	CGCG	5 cut(s)	176, 205, 207, 260, 266
AciI	CCGC	6 cut(s)	174, 176, 183, 207, 238, 260
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	5 cut(s)	139, 431, 538, 724, 750
AcuI	CTGAAG	1 cut(s)	1017
AcyI	GRCGYC	2 cut(s)	171, 284
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	431, 538
AjuI	GAANNNNNNNTTGG	2 cut(s)	787, 819
AluBI	AGCT	5 cut(s)	24, 222, 501, 717, 929
AluI	AGCT	5 cut(s)	24, 222, 501, 717, 929
Alw21I	GWGCWC	2 cut(s)	931, 1005
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	3 cut(s)	213, 388, 638
ApaI	GGGCCC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	5 cut(s)	139, 431, 538, 724, 750
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	388, 389
AsuC2I	CCSGG	3 cut(s)	321, 357, 858
AsuHPI	GGTGA	6 cut(s)	4, 419, 499, 641, 826, 1033
AsuII	TTCGAA	2 cut(s)	596, 728
AvaI	CYCGRG	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	392
BanII	GRGCYC	3 cut(s)	371, 392, 931
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	931, 1005
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	3 cut(s)	326, 868, 1085
BceAI	ACGGC	2 cut(s)	196, 343
BclI	TGATCA	1 cut(s)	838
BcnI	CCSGG	3 cut(s)	321, 357, 858
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	25
BisI	GCNGC	3 cut(s)	25, 174, 184
BlsI	GCNGC	3 cut(s)	26, 175, 185
Bme1390I	CCNGG	3 cut(s)	321, 357, 858
BmeT110I	CYCGRG	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	388, 389
BmiI	GGNNCC	2 cut(s)	390, 792
BmrFI	CCNGG	3 cut(s)	321, 357, 858
BmrI	ACTGGG	1 cut(s)	927
BmsI	GCATC	3 cut(s)	577, 1069, 1075
BmuI	ACTGGG	1 cut(s)	927
BpiI	GAAGAC	1 cut(s)	221
Bpu14I	TTCGAA	2 cut(s)	596, 728
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	3 cut(s)	321, 357, 858
Bsa29I	ATCGAT	1 cut(s)	415
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	2 cut(s)	171, 284
BsaJI	CCNNGG	4 cut(s)	174, 635, 794, 821
BsaWI	WCCGGW	4 cut(s)	224, 380, 811, 1018
BsaXI	ACNNNNNCTCC	2 cut(s)	918, 948
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	922
Bse3DI	GCAATG	1 cut(s)	687
BseCI	ATCGAT	1 cut(s)	415
BseDI	CCNNGG	4 cut(s)	174, 635, 794, 821
BseGI	GGATG	4 cut(s)	703, 786, 841, 879
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	922
BseRI	GAGGAG	2 cut(s)	38, 224
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	899
Bsh1236I	CGCG	5 cut(s)	176, 205, 207, 260, 266
BshFI	GGCC	3 cut(s)	215, 390, 640
BshVI	ATCGAT	1 cut(s)	415
BsiHKAI	GWGCWC	2 cut(s)	931, 1005
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	8 cut(s)	225, 281, 321, 357, 381, 812, 857, 1019
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmI	GAATGC	2 cut(s)	475, 802
BsnI	GGCC	3 cut(s)	215, 390, 640
BsoBI	CYCGRG	1 cut(s)	370
Bsp119I	TTCGAA	2 cut(s)	596, 728
Bsp120I	GGGCCC	1 cut(s)	388
Bsp1286I	GDGCHC	4 cut(s)	371, 392, 931, 1005
Bsp143I	GATC	5 cut(s)	209, 303, 312, 838, 1056
BspACI	CCGC	6 cut(s)	174, 176, 183, 207, 238, 260
BspANI	GGCC	3 cut(s)	215, 390, 640
BspCNI	CTCAG	1 cut(s)	285
BspDI	ATCGAT	1 cut(s)	415
BspFNI	CGCG	5 cut(s)	176, 205, 207, 260, 266
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	2 cut(s)	390, 792
BspMAI	CTGCAG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	217
BspT104I	TTCGAA	2 cut(s)	596, 728
BsrDI	GCAATG	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	922
BssECI	CCNNGG	4 cut(s)	174, 635, 794, 821
BssMI	GATC	5 cut(s)	209, 303, 312, 838, 1056
BssNI	GRCGYC	2 cut(s)	171, 284
BssT1I	CCWWGG	2 cut(s)	635, 794
Bst4CI	ACNGT	3 cut(s)	407, 517, 985
Bst6I	CTCTTC	2 cut(s)	56, 167
BstACI	GRCGYC	2 cut(s)	171, 284
BstBAI	YACGTR	1 cut(s)	193
BstBI	TTCGAA	2 cut(s)	596, 728
BstDEI	CTNAG	2 cut(s)	6, 272
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	4 cut(s)	703, 786, 841, 879
BstFNI	CGCG	5 cut(s)	176, 205, 207, 260, 266
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	5 cut(s)	212, 306, 315, 841, 1059
BstMBI	GATC	5 cut(s)	209, 303, 312, 838, 1056
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstSCI	CCNGG	3 cut(s)	319, 355, 856
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	5 cut(s)	176, 205, 207, 260, 266
BstV1I	GCAGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	215, 390, 640
BsuTUI	ATCGAT	1 cut(s)	415
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	4 cut(s)	703, 786, 841, 879
BtsIMutI	CAGTG	1 cut(s)	1066
CciI	TCATGA	1 cut(s)	912
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	388, 389
Cfr42I	CCGCGG	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	415
CseI	GACGC	3 cut(s)	179, 272, 273
CviAII	CATG	3 cut(s)	845, 913, 946
DdeI	CTNAG	2 cut(s)	6, 272
DpnI	GATC	5 cut(s)	211, 305, 314, 840, 1058
DpnII	GATC	5 cut(s)	209, 303, 312, 838, 1056
DraI	TTTAAA	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	56, 167
EarI	CTCTTC	2 cut(s)	56, 167
EciI	GGCGGA	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	929
Eco130I	CCWWGG	2 cut(s)	635, 794
Eco147I	AGGCCT	1 cut(s)	640
Eco24I	GRGCYC	3 cut(s)	371, 392, 931
Eco53kI	GAGCTC	1 cut(s)	929
Eco57I	CTGAAG	1 cut(s)	1017
Eco88I	CYCGRG	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	929
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	635, 794
EcoT38I	GRGCYC	3 cut(s)	371, 392, 931
ErhI	CCWWGG	2 cut(s)	635, 794
FaeI	CATG	3 cut(s)	848, 916, 949
FatI	CATG	3 cut(s)	844, 912, 945
FauNDI	CATATG	1 cut(s)	661
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	3 cut(s)	25, 174, 184
FokI	GGATG	4 cut(s)	710, 793, 848, 886
FriOI	GRGCYC	3 cut(s)	371, 392, 931
Fsp4HI	GCNGC	3 cut(s)	25, 174, 184
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	3 cut(s)	25, 174, 184
GsaI	CCCAGC	1 cut(s)	903
HaeIII	GGCC	3 cut(s)	215, 390, 640
HapII	CCGG	8 cut(s)	225, 281, 321, 357, 381, 812, 857, 1019
HgaI	GACGC	3 cut(s)	179, 272, 273
HhaI	GCGC	1 cut(s)	207
Hin1I	GRCGYC	2 cut(s)	171, 284
Hin1II	CATG	3 cut(s)	848, 916, 949
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HinfI	GANTC	5 cut(s)	146, 268, 412, 475, 817
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	8 cut(s)	225, 281, 321, 357, 381, 812, 857, 1019
HphI	GGTGA	6 cut(s)	4, 419, 499, 641, 826, 1033
Hpy166II	GTNNAC	4 cut(s)	12, 196, 632, 973
Hpy188I	TCNGA	4 cut(s)	151, 298, 651, 822
Hpy188III	TCNNGA	2 cut(s)	310, 913
Hpy8I	GTNNAC	4 cut(s)	12, 196, 632, 973
Hpy99I	CGWCG	4 cut(s)	173, 289, 347, 724
HpyAV	CCTTC	2 cut(s)	46, 682
HpyCH4III	ACNGT	3 cut(s)	407, 517, 985
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	8 cut(s)	27, 86, 533, 659, 802, 865, 1082, 1088
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	2 cut(s)	6, 272
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	171, 284
Hsp92II	CATG	3 cut(s)	848, 916, 949
HspAI	GCGC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	838
KspAI	GTTAAC	1 cut(s)	973
KspI	CCGCGG	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	209, 303, 312, 838, 1056
LmnI	GCTCC	5 cut(s)	51, 114, 227, 926, 1008
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	3 cut(s)	577, 1069, 1075
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	511, 526
MalI	GATC	5 cut(s)	211, 305, 314, 840, 1058
MboI	GATC	5 cut(s)	209, 303, 312, 838, 1056
MboII	GAAGA	9 cut(s)	43, 90, 93, 96, 154, 221, 298, 1066, 1088
MhlI	GDGCHC	4 cut(s)	371, 392, 931, 1005
MseI	TTAA	5 cut(s)	120, 252, 549, 972, 1098
MspA1I	CMGCKG	2 cut(s)	24, 176
MspI	CCGG	8 cut(s)	225, 281, 321, 357, 381, 812, 857, 1019
MspR9I	CCNGG	3 cut(s)	321, 357, 858
Mva1269I	GAATGC	2 cut(s)	475, 802
MvnI	CGCG	5 cut(s)	176, 205, 207, 260, 266
MwoI	GCNNNNNNNGC	1 cut(s)	366
NciI	CCSGG	3 cut(s)	321, 357, 858
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	5 cut(s)	209, 303, 312, 838, 1056
NlaIII	CATG	3 cut(s)	848, 916, 949
NlaIV	GGNNCC	2 cut(s)	390, 792
NmuCI	GTSAC	1 cut(s)	511
NspV	TTCGAA	2 cut(s)	596, 728
PaeR7I	CTCGAG	1 cut(s)	370
PagI	TCATGA	1 cut(s)	912
PceI	AGGCCT	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	3 cut(s)	348, 357, 725
PctI	GAATGC	2 cut(s)	475, 802
PfeI	GAWTC	5 cut(s)	146, 268, 412, 475, 817
PkrI	GCNGC	3 cut(s)	26, 175, 185
Ppu21I	YACGTR	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	931
PspFI	CCCAGC	1 cut(s)	899
PspN4I	GGNNCC	2 cut(s)	390, 792
PspOMI	GGGCCC	1 cut(s)	388
PspPI	GGNCC	2 cut(s)	388, 389
PspXI	VCTCGAGB	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	931
SacII	CCGCGG	1 cut(s)	177
SaqAI	TTAA	5 cut(s)	120, 252, 549, 972, 1098
SatI	GCNGC	3 cut(s)	25, 174, 184
Sau3AI	GATC	5 cut(s)	209, 303, 312, 838, 1056
Sau96I	GGNCC	2 cut(s)	388, 389
ScrFI	CCNGG	3 cut(s)	321, 357, 858
SduI	GDGCHC	4 cut(s)	371, 392, 931, 1005
SfaNI	GCATC	3 cut(s)	577, 1069, 1075
SfcI	CTRYAG	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	370
Sfr303I	CCGCGG	1 cut(s)	177
SfuI	TTCGAA	2 cut(s)	596, 728
SgrBI	CCGCGG	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	370
SmlI	CTYRAG	2 cut(s)	217, 370
SmoI	CTYRAG	2 cut(s)	217, 370
SseBI	AGGCCT	1 cut(s)	640
SsiI	CCGC	6 cut(s)	174, 176, 183, 207, 238, 260
SspMI	CTAG	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	931
StuI	AGGCCT	1 cut(s)	640
StyD4I	CCNGG	3 cut(s)	319, 355, 856
StyI	CCWWGG	2 cut(s)	635, 794
TaaI	ACNGT	3 cut(s)	407, 517, 985
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	7 cut(s)	144, 311, 371, 415, 596, 722, 728
TauI	GCSGC	2 cut(s)	176, 186
TfiI	GAWTC	5 cut(s)	146, 268, 412, 475, 817
Tru1I	TTAA	5 cut(s)	120, 252, 549, 972, 1098
Tru9I	TTAA	5 cut(s)	120, 252, 549, 972, 1098
TscAI	CASTG	1 cut(s)	1066
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	6 cut(s)	28, 461, 465, 581, 901, 927
TspGWI	ACGGA	1 cut(s)	1052
TspRI	CASTG	1 cut(s)	1066
XapI	RAATTY	5 cut(s)	139, 431, 538, 724, 750
XhoI	CTCGAG	1 cut(s)	370
XspI	CTAG	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.