Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001977

Physical Location & Seq

Genomic Coordinates Forward (+)

18481815 .. 18483483

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTAAGTTCACCATTTCCAGCTGCAGTTTCCCCTTCATTTTGCTCCTCTTCCCTTTCTACTCCCTAACCCTAACCCTAATTGCAAAACCCATTTCCTCTTCTTCCCTCAAACCCATTACCAACAACCCTAATTTCGATTCCGAAATTGCCCTCCTCGGCGACGCCGCCGACGGCGGCTCTTACGTGAACCTCACGCGCGCTTCGGCCTCGAGCTCCGGTCTTGTCCTCCGCCGGAAGGCTTTTAAGTTGGTGGAAGCGAATCTCAGCAATCCGGCGTCGTTTTCGTCGGAGTTGGTGTTTTCGATCACGCCCGGCAACGGCGATGGAATCATGGTCGTTTTCGCCGCCGGCGATTTGGGGTCGAGGTTTTCCGGTAAGGGCTTGTTTGGGCTTGACGGTGAGAAAAGATTTCTGGGTATTGAATTTGATACTGAAATGAATCATAATGTGAATGATGTGAATGCGAATCATGTTGGGGTGAATGTGGGTAGCTTTGTGTCTGTGACTGTTGGGAATGTTTCGGATTTGGGTTTGGTGCTTAATAGTGGAGAAAAGATGAAATCTTGGATTGATTATGATGCTAGTTCGAAACGATTAGAGATAAGGTTGAGTAAGATGGGTGAACCAAGGCCTTATAATCCGATTGTTGCGTATGGTGTTGATTTGATGGCAATGTGGAAAGATAAGGATGTGAATGTAGGTATAAGCTCGTCGAATGGGAATGGCAGTTCCTCGCAGATTAGTAGTGTGTATTTTTGGAGTTTTAGGCTGAGAAATGTTCCAAGGATGCATTCGCTTCCGGTGAATCCGAGGGATTATTTGGATGACAAGCATGGTGAAGGATCGAGGTTGCATAAGCGGATGGCTTGTCCGTTGTCGATTCTTGCTGGGATTATTTTCATGACTGGATGTGGGGCTCTGGTTTCGTTTGTTGTGCTGTTTTTGTGGGCTATAGTTGCTAACAGGCACACAGTTTTCCCTCCTGAGGTGCTTCCTGCTGAGTTTCCGGTGAAGCCTAGTCCTACGGATTTCAGGTATGAGAAGATCAGTGTAGTTGTAGAGGAAGATGCAGATGCAGAGGCAGAGGCAGATGGTGTTAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

370

Amino Acids

40.01

Weight (kDa)

6.11

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_L-type_dom	PF18483	42 - 247	3.1e-08	Legume lectin beta-barrel domain
Lectin_legB	PF00139	45 - 262	8.6e-41	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09035 AT3G09190 AT5G01090
fragaria_vesca	FvH4_6g12300 FvH4_7g23770
malus_domestica	MD01G1145100.v1.1 MD07G1165700.v1.1 MD07G1211800.v1.1 MD12G1085400.v1.1
prunus_persica	Prupe.2G244400_v2.0.a1 Prupe.6G268200_v2.0.a1
pyrus_communis	pycom01g16450 pycom04g13040 pycom04g13050 pycom07g19500 pycom12g08030 pycom12g15000
rosa_chinensis	RchiOBHm_Chr1g0369101 RchiOBHm_Chr3g0464131
rosa_laevigata	RLG00000024720 RLG00000027158
rosa_multiflora	Rmu_sc0001552.1_g000037 Rmu_sc0003337.1_g000012 Rmu_sc0004250.1_g000019 Rmu_sc0010401.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288000 Rroxscaffold_6G00415970
rosa_rugosa	Rorug01G0348100 Rorug03G0070700
rosa_samantha	Rh1AG354900 Rh1BG318200 Rh1BG335600 Rh1CG332600 Rh1DG348900 Rh2BG629000 Rh2CG320200 Rh2DG640800 Rh3BG132100 Rh3CG134300 Rh3DG133300 Rh4DG353800 Rh6BG239800 Rh7DG015800
rosa_wichuraiana	Rw1G031320 Rw3G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	639
AccII	CGCG	2 cut(s)	199, 201
AciI	CCGC	5 cut(s)	168, 177, 232, 348, 862
AclWI	GGATC	1 cut(s)	853
AcsI	RAATTY	1 cut(s)	425
AcyI	GRCGYC	2 cut(s)	165, 278
AfiI	CCNNNNNNNGG	3 cut(s)	238, 320, 988
AgsI	TTSAA	1 cut(s)	425
AjuI	GAANNNNNNNTTGG	2 cut(s)	778, 810
AloI	GAACNNNNNNTCC	2 cut(s)	715, 747
AluBI	AGCT	4 cut(s)	24, 216, 495, 711
AluI	AGCT	4 cut(s)	24, 216, 495, 711
Alw21I	GWGCWC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	853
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	2 cut(s)	207, 632
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	201, 203
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	7 cut(s)	4, 413, 493, 635, 817, 851, 1024
AsuII	TTCGAA	1 cut(s)	590
AvaI	CYCGRG	1 cut(s)	211
AxyI	CCTNAGG	1 cut(s)	987
BanII	GRGCYC	2 cut(s)	218, 922
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	11
BccI	CCATC	5 cut(s)	320, 613, 664, 859, 1088
BceAI	ACGGC	2 cut(s)	190, 337
BcnI	CCSGG	1 cut(s)	315
BfaI	CTAG	2 cut(s)	585, 1020
BfmI	CTRYAG	2 cut(s)	25, 954
BisI	GCNGC	4 cut(s)	25, 168, 178, 348
BlsI	GCNGC	4 cut(s)	26, 169, 179, 349
Bme1390I	CCNGG	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	4 cut(s)	571, 780, 1060, 1066
Bpu14I	TTCGAA	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	187
BsaHI	GRCGYC	2 cut(s)	165, 278
BsaJI	CCNNGG	4 cut(s)	157, 629, 785, 812
BsaWI	WCCGGW	4 cut(s)	218, 374, 802, 1009
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 320, 988
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	913
Bse21I	CCTNAGG	1 cut(s)	987
Bse3DI	GCAATG	1 cut(s)	681
BseDI	CCNNGG	4 cut(s)	157, 629, 785, 812
BseGI	GGATG	5 cut(s)	697, 795, 832, 870, 917
BseLI	CCNNNNNNNGG	3 cut(s)	238, 320, 988
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	4 cut(s)	280, 764, 978, 993
BseNI	ACTGG	1 cut(s)	913
BsePI	GCGCGC	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	38, 146
BseXI	GCAGC	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	890
Bsh1236I	CGCG	2 cut(s)	199, 201
BshFI	GGCC	2 cut(s)	209, 634
BsiHKAI	GWGCWC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	8 cut(s)	219, 235, 275, 315, 351, 375, 803, 1010
BslI	CCNNNNNNNGG	3 cut(s)	238, 320, 988
BsmI	GAATGC	2 cut(s)	469, 793
BsnI	GGCC	2 cut(s)	209, 634
BsoBI	CYCGRG	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	590
Bsp1286I	GDGCHC	2 cut(s)	218, 922
Bsp143I	GATC	3 cut(s)	306, 845, 1047
BspACI	CCGC	5 cut(s)	168, 177, 232, 348, 862
BspANI	GGCC	2 cut(s)	209, 634
BspCNI	CTCAG	4 cut(s)	279, 765, 979, 994
BspFNI	CGCG	2 cut(s)	199, 201
BspHI	TCATGA	1 cut(s)	903
BspMAI	CTGCAG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	853
BspT104I	TTCGAA	1 cut(s)	590
BsrDI	GCAATG	1 cut(s)	681
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	913
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	4 cut(s)	157, 629, 785, 812
BssHII	GCGCGC	1 cut(s)	199
BssMI	GATC	3 cut(s)	306, 845, 1047
BssNI	GRCGYC	2 cut(s)	165, 278
BssT1I	CCWWGG	2 cut(s)	629, 785
Bst4CI	ACNGT	3 cut(s)	401, 511, 976
Bst6I	CTCTTC	2 cut(s)	56, 106
BstACI	GRCGYC	2 cut(s)	165, 278
BstBAI	YACGTR	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	201, 352
BstDEI	CTNAG	5 cut(s)	6, 266, 773, 987, 1002
BstF5I	GGATG	5 cut(s)	697, 795, 832, 870, 917
BstFNI	CGCG	2 cut(s)	199, 201
BstHHI	GCGC	2 cut(s)	201, 203
BstKTI	GATC	3 cut(s)	309, 848, 1050
BstMBI	GATC	3 cut(s)	306, 845, 1047
BstMWI	GCNNNNNNNGC	1 cut(s)	959
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	2 cut(s)	25, 954
BstUI	CGCG	2 cut(s)	199, 201
BstV1I	GCAGC	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	987
BsuRI	GGCC	2 cut(s)	209, 634
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	5 cut(s)	697, 795, 832, 870, 917
BtsIMutI	CAGTG	1 cut(s)	1057
Cac8I	GCNNGC	2 cut(s)	201, 352
CciI	TCATGA	1 cut(s)	903
CfoI	GCGC	2 cut(s)	201, 203
Cfr10I	RCCGGY	1 cut(s)	350
CseI	GACGC	2 cut(s)	173, 267
CviAII	CATG	4 cut(s)	334, 473, 836, 904
DdeI	CTNAG	5 cut(s)	6, 266, 773, 987, 1002
DpnI	GATC	3 cut(s)	308, 847, 1049
DpnII	GATC	3 cut(s)	306, 845, 1047
Eam1104I	CTCTTC	2 cut(s)	56, 106
EarI	CTCTTC	2 cut(s)	56, 106
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	629, 785
Eco147I	AGGCCT	1 cut(s)	634
Eco24I	GRGCYC	2 cut(s)	218, 922
Eco53kI	GAGCTC	1 cut(s)	216
Eco81I	CCTNAGG	1 cut(s)	987
Eco88I	CYCGRG	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	629, 785
EcoT22I	ATGCAT	1 cut(s)	795
EcoT38I	GRGCYC	2 cut(s)	218, 922
ErhI	CCWWGG	2 cut(s)	629, 785
FaeI	CATG	4 cut(s)	337, 476, 839, 907
FatI	CATG	4 cut(s)	333, 472, 835, 903
Fnu4HI	GCNGC	4 cut(s)	25, 168, 178, 348
FokI	GGATG	5 cut(s)	704, 802, 839, 877, 924
FriOI	GRGCYC	2 cut(s)	218, 922
Fsp4HI	GCNGC	4 cut(s)	25, 168, 178, 348
FspBI	CTAG	2 cut(s)	585, 1020
GlaI	GCGC	2 cut(s)	200, 202
GluI	GCNGC	4 cut(s)	25, 168, 178, 348
GsaI	CCCAGC	1 cut(s)	894
HaeIII	GGCC	2 cut(s)	209, 634
HapII	CCGG	8 cut(s)	219, 235, 275, 315, 351, 375, 803, 1010
HgaI	GACGC	2 cut(s)	173, 267
HhaI	GCGC	2 cut(s)	201, 203
Hin1I	GRCGYC	2 cut(s)	165, 278
Hin1II	CATG	4 cut(s)	337, 476, 839, 907
Hin6I	GCGC	2 cut(s)	199, 201
HinP1I	GCGC	2 cut(s)	199, 201
HinfI	GANTC	7 cut(s)	140, 262, 330, 442, 469, 808, 883
HpaII	CCGG	8 cut(s)	219, 235, 275, 315, 351, 375, 803, 1010
HphI	GGTGA	7 cut(s)	4, 413, 493, 635, 817, 851, 1024
Hpy166II	GTNNAC	3 cut(s)	12, 190, 626
Hpy188I	TCNGA	5 cut(s)	145, 292, 526, 645, 813
Hpy188III	TCNNGA	2 cut(s)	904, 986
Hpy8I	GTNNAC	3 cut(s)	12, 190, 626
Hpy99I	CGWCG	5 cut(s)	167, 176, 283, 292, 718
HpyAV	CCTTC	3 cut(s)	46, 232, 836
HpyCH4III	ACNGT	3 cut(s)	401, 511, 976
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	6 cut(s)	27, 86, 793, 856, 1073, 1079
HpyF10VI	GCNNNNNNNGC	1 cut(s)	959
HpyF3I	CTNAG	5 cut(s)	6, 266, 773, 987, 1002
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	2 cut(s)	165, 278
Hsp92II	CATG	4 cut(s)	337, 476, 839, 907
HspAI	GCGC	2 cut(s)	199, 201
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	306, 845, 1047
LmnI	GCTCC	2 cut(s)	51, 221
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	4 cut(s)	571, 780, 1060, 1066
MaeI	CTAG	2 cut(s)	585, 1020
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	3 cut(s)	308, 847, 1049
MboI	GATC	3 cut(s)	306, 845, 1047
MboII	GAAGA	5 cut(s)	43, 93, 96, 1057, 1079
MhlI	GDGCHC	2 cut(s)	218, 922
MluCI	AATT	4 cut(s)	81, 133, 147, 425
MmeI	TCCRAC	1 cut(s)	270
Mph1103I	ATGCAT	1 cut(s)	795
MreI	CGCCGGCG	1 cut(s)	350
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	3 cut(s)	246, 543, 1101
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	8 cut(s)	219, 235, 275, 315, 351, 375, 803, 1010
MspR9I	CCNGG	1 cut(s)	315
Mva1269I	GAATGC	2 cut(s)	469, 793
MvnI	CGCG	2 cut(s)	199, 201
MwoI	GCNNNNNNNGC	1 cut(s)	959
NaeI	GCCGGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	3 cut(s)	306, 845, 1047
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	4 cut(s)	337, 476, 839, 907
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	795
NspV	TTCGAA	1 cut(s)	590
PaeR7I	CTCGAG	1 cut(s)	211
PagI	TCATGA	1 cut(s)	903
PauI	GCGCGC	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PctI	GAATGC	2 cut(s)	469, 793
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	7 cut(s)	140, 262, 330, 442, 469, 808, 883
PkrI	GCNGC	4 cut(s)	26, 169, 179, 349
Ppu21I	YACGTR	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	890
PspXI	VCTCGAGB	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	29
PteI	GCGCGC	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	246, 543, 1101
SatI	GCNGC	4 cut(s)	25, 168, 178, 348
Sau3AI	GATC	3 cut(s)	306, 845, 1047
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	218, 922
SfaNI	GCATC	4 cut(s)	571, 780, 1060, 1066
SfcI	CTRYAG	2 cut(s)	25, 954
Sfr274I	CTCGAG	1 cut(s)	211
SfuI	TTCGAA	1 cut(s)	590
SgrAI	CRCCGGYG	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	4 cut(s)	81, 133, 147, 425
SseBI	AGGCCT	1 cut(s)	634
SsiI	CCGC	5 cut(s)	168, 177, 232, 348, 862
SspMI	CTAG	2 cut(s)	585, 1020
SstI	GAGCTC	1 cut(s)	218
StuI	AGGCCT	1 cut(s)	634
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	2 cut(s)	629, 785
TaaI	ACNGT	3 cut(s)	401, 511, 976
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	8 cut(s)	138, 212, 305, 365, 590, 716, 848, 881
TasI	AATT	4 cut(s)	81, 133, 147, 425
TauI	GCSGC	3 cut(s)	170, 180, 350
TfiI	GAWTC	7 cut(s)	140, 262, 330, 442, 469, 808, 883
Tru1I	TTAA	3 cut(s)	246, 543, 1101
Tru9I	TTAA	3 cut(s)	246, 543, 1101
TscAI	CASTG	1 cut(s)	1057
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	4 cut(s)	28, 455, 575, 892
TspGWI	ACGGA	2 cut(s)	864, 1043
TspRI	CASTG	1 cut(s)	1057
XapI	RAATTY	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	211
XspI	CTAG	2 cut(s)	585, 1020
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.