Rh2CG320200

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001977
Physical Location & Seq
Reverse (-)
41076898 .. 41087444
10547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG320200.1

Sequence Viewer

Length: 459 bp
ATGAATGAAAATGTGAATGATGTGAATGCGAATCATACAGGGGTGAATGTGGGTAGCTTTGTATCTCTGACTGTTGGGAATGTTACTGCATTGAATTTGGTGCTTAATAGTGGAGAAAAGATGAAATCTTGGATTGATTATGATGCTAGTTCGAAAAGATTAGAGATAAGGTTGAGTAAGTTGGGTGAACCAAGGCCTTATAATCCGATTGTTGCGCATGGCATAGATTTATTGGAAATGTGGAAAGATAAGGATGTGTATGTAGGGATAAGCTCGTCGAATTCGAATGGCAGTTCCTCGCAGATTTGTAGTGTGTATTCTTGGAGTTTTAGGATGAGAAAGGTTCCGAGGATGCATTCGCTTCCGGTGAATCCGAGGGGTTATTTGGATGATCAGCATGTTCGACCTATCAGTATTGTTCTAGCTCCTCCAGAGACTGAGCATCAATCTGAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

152

Amino Acids

16.95

Weight (kDa)

6.5

Isoelectric Point (pI)

30.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 2 - 117 2e-25 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
Acc16I TGCGCA 1 cut(s) 216
AcsI RAATTY 2 cut(s) 94, 280
AgsI TTSAA 1 cut(s) 94
AluBI AGCT 3 cut(s) 57, 273, 425
AluI AGCT 3 cut(s) 57, 273, 425
Alw26I GTCTC 1 cut(s) 428
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 1 cut(s) 194
ApoI RAATTY 2 cut(s) 94, 280
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 3 cut(s) 55, 197, 379
AsuII TTCGAA 2 cut(s) 152, 284
BclI TGATCA 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 2 cut(s) 147, 422
BmiI GGNNCC 1 cut(s) 345
BmsI GCATC 3 cut(s) 133, 342, 451
BpmI CTGGAG 1 cut(s) 414
Bpu14I TTCGAA 2 cut(s) 152, 284
BsaJI CCNNGG 3 cut(s) 191, 347, 374
BsaWI WCCGGW 1 cut(s) 364
BseDI CCNNGG 3 cut(s) 191, 347, 374
BseGI GGATG 4 cut(s) 259, 339, 357, 394
BseMII CTCAG 1 cut(s) 429
BseRI GAGGAG 1 cut(s) 417
BshFI GGCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 428
BsmI GAATGC 2 cut(s) 31, 355
BsnI GGCC 1 cut(s) 196
Bsp119I TTCGAA 2 cut(s) 152, 284
Bsp143I GATC 1 cut(s) 391
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 345
BspT104I TTCGAA 2 cut(s) 152, 284
BssECI CCNNGG 3 cut(s) 191, 347, 374
BssMI GATC 1 cut(s) 391
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 73
BstBI TTCGAA 2 cut(s) 152, 284
BstDEI CTNAG 1 cut(s) 438
BstF5I GGATG 4 cut(s) 259, 339, 357, 394
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 1 cut(s) 391
BstNSI RCATGY 1 cut(s) 401
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 4 cut(s) 259, 339, 357, 394
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 1 cut(s) 217
CviAII CATG 2 cut(s) 218, 398
CviJI RGCY 4 cut(s) 57, 196, 273, 425
CviKI_1 RGCY 4 cut(s) 57, 196, 273, 425
DdeI CTNAG 1 cut(s) 438
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 2 cut(s) 221, 401
FaiI YATR 8 cut(s) 36, 141, 201, 219, 224, 261, 399, 457
FatI CATG 2 cut(s) 217, 397
FbaI TGATCA 1 cut(s) 391
FokI GGATG 4 cut(s) 266, 346, 364, 401
FspBI CTAG 2 cut(s) 147, 422
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 365
HhaI GCGC 1 cut(s) 217
Hin1II CATG 2 cut(s) 221, 401
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 2 cut(s) 31, 370
HpaII CCGG 1 cut(s) 365
HphI GGTGA 3 cut(s) 55, 197, 379
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 5 cut(s) 69, 207, 348, 375, 451
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 89, 355
HpyF3I CTNAG 1 cut(s) 438
Hsp92II CATG 2 cut(s) 221, 401
HspAI GCGC 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 3 cut(s) 24, 378, 444
LweI GCATC 3 cut(s) 133, 342, 451
MaeI CTAG 2 cut(s) 147, 422
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MluCI AATT 2 cut(s) 94, 280
MnlI CCTC 4 cut(s) 307, 342, 369, 438
Mph1103I ATGCAT 1 cut(s) 357
MseI TTAA 1 cut(s) 105
MspI CCGG 1 cut(s) 365
Mva1269I GAATGC 2 cut(s) 31, 355
NdeII GATC 1 cut(s) 391
NlaIII CATG 2 cut(s) 221, 401
NlaIV GGNNCC 1 cut(s) 345
NsbI TGCGCA 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 1 cut(s) 401
NspV TTCGAA 2 cut(s) 152, 284
PceI AGGCCT 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PctI GAATGC 2 cut(s) 31, 355
PfeI GAWTC 2 cut(s) 31, 370
PsiI TTATAA 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 437
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 1 cut(s) 391
SetI ASST 6 cut(s) 59, 173, 275, 345, 409, 427
SfaNI GCATC 3 cut(s) 133, 342, 451
SfuI TTCGAA 2 cut(s) 152, 284
Sse9I AATT 2 cut(s) 94, 280
SseBI AGGCCT 1 cut(s) 196
SspMI CTAG 2 cut(s) 147, 422
StuI AGGCCT 1 cut(s) 196
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 4 cut(s) 152, 278, 284, 403
TasI AATT 2 cut(s) 94, 280
TfiI GAWTC 2 cut(s) 31, 370
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TspDTI ATGAA 3 cut(s) 17, 21, 137
XapI RAATTY 2 cut(s) 94, 280
XceI RCATGY 1 cut(s) 401
XspI CTAG 2 cut(s) 147, 422
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.