Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001977

Physical Location & Seq

Genomic Coordinates Forward (+)

8916198 .. 8916782

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g08030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAATTCGTTAGCAGGGCTTACTCAAACAAAAACACTCTCTCCTTCCTACTCGTCCCCCTTCATTTTCCTCATCTCCTTCTCCTATTTCCTAACCCTAACCCTTGTTGCAGAACCCATTTCTTCTTCGGAGCCCAAACCCCTAACCAACAGCAGCAACCCCAACTTCGATTCCGAAAGTTTGCTCCTTGGCGATGCTGAGCTAGCAGGCGATGGATTCTATGTCAACCTTACGCGGTCGTCTGTCTCAAGCTCCGGTCTTTTACTCCGCAGAAAACGCTTTAAATTTGTCGATAGGAATCTTAGCAACCCGCCGTCATTTTCCACCGAATTCGCATTCTCTATGACGCTTGGCAGCGGCGATAACCTCTTGGTCGTCTTTGCTCTTGGAGATTTGGGGTCCAGATTATTGGGTAAGGGCTCATTTGGGATTAATGATGAGGATCGGTTTCTGGGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

154

Amino Acids

16.52

Weight (kDa)

5.04

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09035 AT3G09190 AT5G01090
fragaria_vesca	FvH4_6g12300 FvH4_7g23770
malus_domestica	MD01G1145100.v1.1 MD07G1165700.v1.1 MD07G1211800.v1.1 MD12G1085400.v1.1
prunus_persica	Prupe.2G244400_v2.0.a1 Prupe.6G268200_v2.0.a1
pyrus_communis	pycom01g16450 pycom04g13040 pycom04g13050 pycom07g19500 pycom12g08030 pycom12g15000
rosa_chinensis	RchiOBHm_Chr1g0369101 RchiOBHm_Chr3g0464131
rosa_laevigata	RLG00000024720 RLG00000027158
rosa_multiflora	Rmu_sc0001552.1_g000037 Rmu_sc0003337.1_g000012 Rmu_sc0004250.1_g000019 Rmu_sc0010401.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288000 Rroxscaffold_6G00415970
rosa_rugosa	Rorug01G0348100 Rorug03G0070700
rosa_samantha	Rh1AG354900 Rh1BG318200 Rh1BG335600 Rh1CG332600 Rh1DG348900 Rh2BG629000 Rh2CG320200 Rh2DG640800 Rh3BG132100 Rh3CG134300 Rh3DG133300 Rh4DG353800 Rh6BG239800 Rh7DG015800
rosa_wichuraiana	Rw1G031320 Rw3G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	235
AciI	CCGC	4 cut(s)	235, 268, 311, 357
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	3 cut(s)	4, 284, 329
AluBI	AGCT	2 cut(s)	202, 252
AluI	AGCT	2 cut(s)	202, 252
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	153, 354
ApoI	RAATTY	3 cut(s)	4, 284, 329
AseI	ATTAAT	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	399
AsuNHI	GCTAGC	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	399
BanII	GRGCYC	2 cut(s)	135, 422
BbvI	GCAGC	2 cut(s)	165, 366
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	203
BisI	GCNGC	3 cut(s)	154, 355, 358
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	3 cut(s)	155, 356, 359
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	132, 400
BmsI	GCATC	1 cut(s)	184
BmtI	GCTAGC	1 cut(s)	206
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	232
BsaBI	GATNNNNATC	2 cut(s)	297, 441
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse8I	GATNNNNATC	2 cut(s)	297, 441
BseDI	CCNNGG	1 cut(s)	187
BseJI	GATNNNNATC	2 cut(s)	297, 441
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	165, 366
Bsh1236I	CGCG	1 cut(s)	235
Bsh1285I	CGRYCG	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	135, 422
Bsp143I	GATC	1 cut(s)	442
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	4 cut(s)	235, 268, 311, 357
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	132, 400
BspOI	GCTAGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	204, 208
BstDEI	CTNAG	2 cut(s)	198, 302
BstFNI	CGCG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	442
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 276
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	165, 366
BstXI	CCANNNNNNTGG	1 cut(s)	409
BtgZI	GCGATG	2 cut(s)	207, 225
Cac8I	GCNNGC	2 cut(s)	204, 208
Cfr13I	GGNCC	1 cut(s)	399
CseI	GACGC	1 cut(s)	355
CviJI	RGCY	5 cut(s)	19, 133, 202, 252, 420
CviKI_1	RGCY	5 cut(s)	19, 133, 202, 252, 420
DdeI	CTNAG	2 cut(s)	198, 302
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
DraI	TTTAAA	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	135, 422
Eco47I	GGWCC	1 cut(s)	399
EcoRI	GAATTC	2 cut(s)	4, 329
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	2 cut(s)	135, 422
ErhI	CCWWGG	1 cut(s)	187
FaiI	YATR	2 cut(s)	222, 344
FaqI	GGGAC	1 cut(s)	40
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	154, 355, 358
FriOI	GRGCYC	2 cut(s)	135, 422
Fsp4HI	GCNGC	3 cut(s)	154, 355, 358
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	3 cut(s)	154, 355, 358
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	170, 216, 298
HpaII	CCGG	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	130, 175
Hpy188III	TCNNGA	1 cut(s)	402
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	3 cut(s)	54, 70, 88
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 276
HpyF3I	CTNAG	2 cut(s)	198, 302
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	3 cut(s)	130, 189, 257
LpnPI	CCDG	4 cut(s)	192, 268, 415, 437
Lsp1109I	GCAGC	2 cut(s)	165, 366
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	203
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	2 cut(s)	114, 117
MhlI	GDGCHC	2 cut(s)	135, 422
MluCI	AATT	3 cut(s)	4, 284, 329
MnlI	CCTC	3 cut(s)	80, 377, 433
MseI	TTAA	3 cut(s)	282, 432, 460
MspA1I	CMGCKG	1 cut(s)	357
MspI	CCGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	335
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	203, 276
NdeII	GATC	1 cut(s)	442
NheI	GCTAGC	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	132, 400
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	170, 216, 298
PkrI	GCNGC	3 cut(s)	155, 356, 359
PshBI	ATTAAT	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	132, 400
PspPI	GGNCC	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	282, 432, 460
SatI	GCNGC	3 cut(s)	154, 355, 358
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	1 cut(s)	399
SduI	GDGCHC	2 cut(s)	135, 422
SetI	ASST	4 cut(s)	204, 231, 254, 369
SfaNI	GCATC	1 cut(s)	184
SinI	GGWCC	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	3 cut(s)	4, 284, 329
SsiI	CCGC	4 cut(s)	235, 268, 311, 357
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	187
TaqI	TCGA	2 cut(s)	168, 291
TasI	AATT	3 cut(s)	4, 284, 329
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	3 cut(s)	170, 216, 298
Tru1I	TTAA	3 cut(s)	282, 432, 460
Tru9I	TTAA	3 cut(s)	282, 432, 460
TseI	GCWGC	2 cut(s)	153, 354
TspDTI	ATGAA	2 cut(s)	17, 52
VpaK11BI	GGWCC	1 cut(s)	399
VspI	ATTAAT	1 cut(s)	432
XapI	RAATTY	3 cut(s)	4, 284, 329
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.