Rorug01G0348100

Belongs to the leguminous lectin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
46586747 .. 46589410
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0348100.1

Sequence Viewer

Length: 1746 bp
ATGTCCTCCACTAATGAGTTTCAAGAAAGTCGCTTTCCAGATGACAGACAGAAGCTTGATGGGTTTAGACTATTCAACACTGTGAGTCCACAAGACAGCCAAGACTTAGAAACCAATTCCACGTTTAATATCCGAAAGAGTTTGGCTTGGGACAGTGCCTTCTTCACAAATCCAGGAGTCTTGGAACCTGAAGAGCTGCTTCAGACTACGAGTTCTGGAGCTACAGGCAATGCAGTTAACCTACTTGGAAATGAGGAAGAAATACTGTTGCCTTCGGAGTCTTTGGAGCCTGAAAGAACCAGAAAATTTGAGAGCTGTAGTTATCGAAAGAGCTTAACTTGGGATAATGCCTTTTACACTAGTCCAGGGGTTTTGGATCCTGAGGAATTGTCTCTAGTAAACAAAGGATTCAAGAAATCTGAGTCTCATCAACTTCTTGCCATTCAAGAAGTTTGGCGGTCCACGGAGTCAAAGTCTACAACAGATAGCGGCAGTTCTGCTTTGGCAAGCCTAGAGTTTGAACTTTTTGAGGACAAAATGTTATCTATGCAGAAGCCAGCTAGTCTGAAACTGAAAAGAGGAAGGGGATTGCAAAATGTCCACTCCACGAAGAAAACTGATGCTTCGTCTCGGGTGAAGATGAAAGCCTCAGCATCCCAAAGGCAAAATCTTAATAATCAGCCAGAAAGGATTTTAAAGGAGGTTTTTGTTTCCTCACAAAGACAGCTTGCTGCTGGAAGTGGGAAATTCATCCCAACAGCATCTCTTAAACAACCAAAATTATTTAGTGGCGTTAATCACTCTTCAACAGCTGCAACCAGAAGGTCCTCTTTGGGTGGAAACTATGTCAAGATGGGAACTGCAAAGGATGCACGTGGACAATGTTCGACTCTTTCAAAGAAACCTTGCTCATCCAGTATCGTCACTCATAGTCCTACACCATCCCCAAAATCGTCTTCATCAAGTTCTCCAGCTGCCAAAGACACTAGTGAATCTCCAATGAACTCAAGACGAAAATTTTATTATTCACTTGACGATTTTGCTGCCAATGGCATAACCATGAGCAATCCTTTGAGATTCACAAAGAAAAACAAAGATGAACTCGAAAGTTCTTGTCAGGATTCTTGTAAATTGTTCACACCAAAGTCTACCATTTACGCCTCATCTGCTGCTTCTCTTGATGGCTGGTCCTCAGAATCATCATCGTCATCTATGAGTCAAAGATCTATCAGCAGTCAGATATCTTTTGGGAGTGATGCCTCTCAGGCATCAGATACGGTACATTGTGTTGGACAGGAAAATCAGGAAACAAGTCTCCCAAATCAGAATATGAAGCCCTCAGGTCTCAGAGTGCCATCACCGAAGATTGGCTTTTTTGACGAGGAGATTACTTTGGTGCAAGCAAGGGGTAGCATGCATTTTCATTCTGTTGTGCCAAGCACAGTGTCTCAAAATGGAGGTGCAAAGCTATATGGGAAGCTTAAACCTCCAAGAAACTTTGATGGGAAGAATAACGTGCAGAAGGTGCTCAATAGAGTGAACAAGGAATGCACCAAAGAGAATGAAGAGCCCAATATACATTGTCCTGGAGAAAACATGTGCAGCGGTCAAGATAATAGTGACGGATATAATACATACTACTTCAAAAACCAAATTGAAGGTTTAACTGAACAAGTTGGTATCATTGATCTTGGTTGTGATGTTGTGATGGAGCTCAGACCAGACACGAATGCTTTCCACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

581

Amino Acids

63.76

Weight (kDa)

7.93

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 476, 1148
AciI CCGC 3 cut(s) 457, 489, 1605
AclWI GGATC 2 cut(s) 371, 384
AcsI RAATTY 3 cut(s) 305, 746, 1016
AcuI CTGAAG 2 cut(s) 185, 210
AcvI CACGTG 1 cut(s) 875
AfaI GTAC 1 cut(s) 1281
AfiI CCNNNNNNNGG 1 cut(s) 1367
AflIII ACRYGT 1 cut(s) 1596
AgsI TTSAA 9 cut(s) 23, 76, 412, 446, 521, 807, 897, 1645, 1658
AhlI ACTAGT 2 cut(s) 359, 986
AjnI CCWGG 3 cut(s) 172, 364, 1585
AjuI GAANNNNNNNTTGG 2 cut(s) 940, 972
Alw21I GWGCWC 2 cut(s) 1530, 1716
Alw26I GTCTC 6 cut(s) 396, 429, 633, 1319, 1349, 1452
AlwI GGATC 2 cut(s) 371, 384
Ama87I CYCGRG 1 cut(s) 630
ApeKI GCWGC 7 cut(s) 196, 731, 812, 974, 1043, 1169, 1602
ApoI RAATTY 3 cut(s) 305, 746, 1016
Asp700I GAANNNNTTC 1 cut(s) 1733
AspS9I GGNCC 3 cut(s) 459, 825, 1188
AsuHPI GGTGA 2 cut(s) 646, 1350
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 3 cut(s) 459, 825, 1188
AxyI CCTNAGG 2 cut(s) 381, 1339
BamHI GGATCC 1 cut(s) 376
BanII GRGCYC 2 cut(s) 1572, 1716
BbrPI CACGTG 1 cut(s) 875
BbsI GAAGAC 1 cut(s) 948
Bbv12I GWGCWC 2 cut(s) 1530, 1716
BbvCI CCTCAGC 1 cut(s) 649
BbvI GCAGC 7 cut(s) 183, 718, 799, 961, 1030, 1156, 1614
BccI CCATC 7 cut(s) 53, 847, 949, 1175, 1363, 1496, 1702
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BciT130I CCWGG 3 cut(s) 174, 366, 1587
BcoDI GTCTC 6 cut(s) 396, 429, 633, 1319, 1349, 1452
BcuI ACTAGT 2 cut(s) 359, 986
BfaI CTAG 5 cut(s) 360, 395, 512, 561, 987
BfmI CTRYAG 2 cut(s) 222, 316
BglI GCCNNNNNGGC 1 cut(s) 1265
BglII AGATCT 1 cut(s) 1223
BisI GCNGC 8 cut(s) 197, 490, 732, 813, 975, 1044, 1170, 1603
BlsI GCNGC 8 cut(s) 198, 491, 733, 814, 976, 1045, 1171, 1604
Bme1390I CCNGG 3 cut(s) 174, 366, 1587
Bme18I GGWCC 3 cut(s) 459, 825, 1188
BmeT110I CYCGRG 1 cut(s) 630
BmgT120I GGNCC 3 cut(s) 459, 825, 1188
BmiI GGNNCC 3 cut(s) 186, 288, 378
BmrFI CCNGG 3 cut(s) 174, 366, 1587
BmsI GCATC 6 cut(s) 610, 662, 770, 859, 1246, 1277
BpiI GAAGAC 1 cut(s) 948
BpmI CTGGAG 3 cut(s) 237, 954, 1608
Bpu10I CCTNAGC 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 991
BsaAI YACGTR 1 cut(s) 875
BsaI GGTCTC 1 cut(s) 1349
BsaJI CCNNGG 2 cut(s) 365, 462
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 1367
Bse1I ACTGG 1 cut(s) 915
Bse21I CCTNAGG 2 cut(s) 381, 1339
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 3 cut(s) 174, 366, 1587
BseDI CCNNGG 2 cut(s) 365, 462
BseGI GGATG 5 cut(s) 653, 750, 874, 911, 941
BseLI CCNNNNNNNGG 1 cut(s) 1367
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 8 cut(s) 372, 411, 663, 1206, 1277, 1353, 1360, 1729
BseNI ACTGG 1 cut(s) 915
BseRI GAGGAG 1 cut(s) 1397
BseXI GCAGC 7 cut(s) 183, 718, 799, 961, 1030, 1156, 1614
BsgI GTGCAG 2 cut(s) 1538, 1621
BsiHKAI GWGCWC 2 cut(s) 1530, 1716
BsiHKCI CYCGRG 1 cut(s) 630
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 1367
BsmAI GTCTC 6 cut(s) 396, 429, 633, 1319, 1349, 1452
BsmBI CGTCTC 1 cut(s) 633
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 2 cut(s) 1553, 1735
Bso31I GGTCTC 1 cut(s) 1349
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 3 cut(s) 1530, 1572, 1716
Bsp143I GATC 3 cut(s) 376, 1223, 1687
BspACI CCGC 3 cut(s) 457, 489, 1605
BspCNI CTCAG 8 cut(s) 373, 412, 662, 1205, 1276, 1352, 1359, 1728
BspLI GGNNCC 3 cut(s) 186, 288, 378
BspPI GGATC 2 cut(s) 371, 384
BspQI GCTCTTC 2 cut(s) 186, 1560
BspTNI GGTCTC 1 cut(s) 1349
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 915
BssECI CCNNGG 2 cut(s) 365, 462
BssMI GATC 3 cut(s) 376, 1223, 1687
Bst2UI CCWGG 3 cut(s) 174, 366, 1587
Bst4CI ACNGT 5 cut(s) 82, 155, 267, 1279, 1444
Bst6I CTCTTC 3 cut(s) 186, 808, 1560
BstAPI GCANNNNNTGC 2 cut(s) 869, 1525
BstBAI YACGTR 1 cut(s) 875
BstC8I GCNNGC 5 cut(s) 508, 558, 729, 1401, 1415
BstDEI CTNAG 9 cut(s) 106, 381, 420, 649, 1192, 1263, 1339, 1346, 1715
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 5 cut(s) 653, 750, 874, 911, 941
BstKTI GATC 3 cut(s) 379, 1226, 1690
BstMAI GTCTC 6 cut(s) 396, 429, 633, 1319, 1349, 1452
BstMBI GATC 3 cut(s) 376, 1223, 1687
BstMWI GCNNNNNNNGC 5 cut(s) 869, 1166, 1265, 1525, 1739
BstNI CCWGG 3 cut(s) 174, 366, 1587
BstNSI RCATGY 2 cut(s) 1417, 1600
BstSCI CCNGG 3 cut(s) 172, 364, 1585
BstSFI CTRYAG 2 cut(s) 222, 316
BstV1I GCAGC 7 cut(s) 183, 718, 799, 961, 1030, 1156, 1614
BstV2I GAAGAC 1 cut(s) 948
BstX2I RGATCY 2 cut(s) 376, 1223
BstYI RGATCY 2 cut(s) 376, 1223
Bsu36I CCTNAGG 2 cut(s) 381, 1339
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 5 cut(s) 653, 750, 874, 911, 941
BtsIMutI CAGTG 3 cut(s) 78, 160, 1449
Cac8I GCNNGC 5 cut(s) 508, 558, 729, 1401, 1415
Cfr13I GGNCC 3 cut(s) 459, 825, 1188
Csp6I GTAC 1 cut(s) 1280
CviAII CATG 3 cut(s) 1060, 1414, 1597
CviQI GTAC 1 cut(s) 1280
DdeI CTNAG 9 cut(s) 106, 381, 420, 649, 1192, 1263, 1339, 1346, 1715
DpnI GATC 3 cut(s) 378, 1225, 1689
DpnII GATC 3 cut(s) 376, 1223, 1687
DraI TTTAAA 1 cut(s) 696
Eam1104I CTCTTC 3 cut(s) 186, 808, 1560
EarI CTCTTC 3 cut(s) 186, 808, 1560
Ecl136II GAGCTC 1 cut(s) 1714
Eco24I GRGCYC 2 cut(s) 1572, 1716
Eco31I GGTCTC 1 cut(s) 1349
Eco32I GATATC 1 cut(s) 1242
Eco47I GGWCC 3 cut(s) 459, 825, 1188
Eco53kI GAGCTC 1 cut(s) 1714
Eco57I CTGAAG 2 cut(s) 185, 210
Eco72I CACGTG 1 cut(s) 875
Eco81I CCTNAGG 2 cut(s) 381, 1339
Eco88I CYCGRG 1 cut(s) 630
EcoICRI GAGCTC 1 cut(s) 1714
EcoO109I RGGNCCY 1 cut(s) 825
EcoRII CCWGG 3 cut(s) 172, 364, 1585
EcoRV GATATC 1 cut(s) 1242
EcoT22I ATGCAT 1 cut(s) 1419
EcoT38I GRGCYC 2 cut(s) 1572, 1716
Esp3I CGTCTC 1 cut(s) 633
FaeI CATG 3 cut(s) 1063, 1417, 1600
FalI AAGNNNNNCTT 6 cut(s) 183, 215, 814, 846, 1355, 1387
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 1059, 1413, 1596
FblI GTMKAC 2 cut(s) 476, 1148
Fnu4HI GCNGC 8 cut(s) 197, 490, 732, 813, 975, 1044, 1170, 1603
FokI GGATG 5 cut(s) 640, 737, 881, 898, 928
FriOI GRGCYC 2 cut(s) 1572, 1716
Fsp4HI GCNGC 8 cut(s) 197, 490, 732, 813, 975, 1044, 1170, 1603
FspBI CTAG 5 cut(s) 360, 395, 512, 561, 987
GluI GCNGC 8 cut(s) 197, 490, 732, 813, 975, 1044, 1170, 1603
GsuI CTGGAG 3 cut(s) 237, 954, 1608
Hin1II CATG 3 cut(s) 1063, 1417, 1600
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 53, 1478
HpaI GTTAAC 1 cut(s) 238
HphI GGTGA 2 cut(s) 646, 1350
HpyAV CCTTC 6 cut(s) 169, 282, 576, 816, 1516, 1652
HpyCH4III ACNGT 5 cut(s) 82, 155, 267, 1279, 1444
HpyCH4IV ACGT 3 cut(s) 122, 874, 1515
HpyF10VI GCNNNNNNNGC 5 cut(s) 869, 1166, 1265, 1525, 1739
HpyF3I CTNAG 9 cut(s) 106, 381, 420, 649, 1192, 1263, 1339, 1346, 1715
HpySE526I ACGT 3 cut(s) 122, 874, 1515
Hsp92II CATG 3 cut(s) 1063, 1417, 1600
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 3 cut(s) 376, 1223, 1687
LguI GCTCTTC 2 cut(s) 186, 1560
LmnI GCTCC 3 cut(s) 218, 286, 1711
Lsp1109I GCAGC 7 cut(s) 183, 718, 799, 961, 1030, 1156, 1614
LweI GCATC 6 cut(s) 610, 662, 770, 859, 1246, 1277
MaeI CTAG 5 cut(s) 360, 395, 512, 561, 987
MaeII ACGT 3 cut(s) 122, 874, 1515
MaeIII GTNAC 2 cut(s) 922, 1619
MalI GATC 3 cut(s) 378, 1225, 1689
MboI GATC 3 cut(s) 376, 1223, 1687
MflI RGATCY 2 cut(s) 376, 1223
MhlI GDGCHC 3 cut(s) 1530, 1572, 1716
MluCI AATT 8 cut(s) 115, 305, 386, 746, 779, 1016, 1130, 1653
MlyI GAGTC 7 cut(s) 94, 186, 287, 431, 476, 883, 1225
MmeI TCCRAC 1 cut(s) 1270
Mph1103I ATGCAT 1 cut(s) 1419
MroXI GAANNNNTTC 1 cut(s) 1733
MslI CAYNNNNRTG 1 cut(s) 1058
MspA1I CMGCKG 3 cut(s) 812, 974, 1605
MspR9I CCNGG 3 cut(s) 174, 366, 1587
Mva1269I GAATGC 2 cut(s) 1553, 1735
MvaI CCWGG 3 cut(s) 174, 366, 1587
MwoI GCNNNNNNNGC 5 cut(s) 869, 1166, 1265, 1525, 1739
NdeII GATC 3 cut(s) 376, 1223, 1687
NlaIII CATG 3 cut(s) 1063, 1417, 1600
NlaIV GGNNCC 3 cut(s) 186, 288, 378
NmuCI GTSAC 2 cut(s) 922, 1619
NsiI ATGCAT 1 cut(s) 1419
NspI RCATGY 2 cut(s) 1417, 1600
PaeI GCATGC 1 cut(s) 1417
PciI ACATGT 1 cut(s) 1596
PciSI GCTCTTC 2 cut(s) 186, 1560
PctI GAATGC 2 cut(s) 1553, 1735
PdmI GAANNNNTTC 1 cut(s) 1733
PfeI GAWTC 5 cut(s) 408, 992, 1077, 1121, 1196
PfoI TCCNGGA 2 cut(s) 172, 1585
PkrI GCNGC 8 cut(s) 198, 491, 733, 814, 976, 1045, 1171, 1604
PleI GAGTC 7 cut(s) 93, 185, 286, 430, 475, 883, 1224
PmaCI CACGTG 1 cut(s) 875
PmlI CACGTG 1 cut(s) 875
PpsI GAGTC 7 cut(s) 93, 185, 286, 430, 475, 883, 1224
Ppu21I YACGTR 1 cut(s) 875
PpuMI RGGWCCY 1 cut(s) 825
PscI ACATGT 1 cut(s) 1596
Psp124BI GAGCTC 1 cut(s) 1716
Psp5II RGGWCCY 1 cut(s) 825
Psp6I CCWGG 3 cut(s) 172, 364, 1585
PspCI CACGTG 1 cut(s) 875
PspGI CCWGG 3 cut(s) 172, 364, 1585
PspN4I GGNNCC 3 cut(s) 186, 288, 378
PspPI GGNCC 3 cut(s) 459, 825, 1188
PspPPI RGGWCCY 1 cut(s) 825
PsuI RGATCY 2 cut(s) 376, 1223
PvuII CAGCTG 2 cut(s) 812, 974
RsaI GTAC 1 cut(s) 1281
RsaNI GTAC 1 cut(s) 1280
RseI CAYNNNNRTG 1 cut(s) 1058
SacI GAGCTC 1 cut(s) 1716
SapI GCTCTTC 2 cut(s) 186, 1560
SatI GCNGC 8 cut(s) 197, 490, 732, 813, 975, 1044, 1170, 1603
Sau3AI GATC 3 cut(s) 376, 1223, 1687
Sau96I GGNCC 3 cut(s) 459, 825, 1188
SchI GAGTC 7 cut(s) 94, 186, 287, 431, 476, 883, 1225
ScrFI CCNGG 3 cut(s) 174, 366, 1587
SduI GDGCHC 3 cut(s) 1530, 1572, 1716
SfaNI GCATC 6 cut(s) 610, 662, 770, 859, 1246, 1277
SfcI CTRYAG 2 cut(s) 222, 316
SinI GGWCC 3 cut(s) 459, 825, 1188
SmiMI CAYNNNNRTG 1 cut(s) 1058
SmlI CTYRAG 1 cut(s) 1006
SmoI CTYRAG 1 cut(s) 1006
SpeI ACTAGT 2 cut(s) 359, 986
SphI GCATGC 1 cut(s) 1417
Sse9I AATT 8 cut(s) 115, 305, 386, 746, 779, 1016, 1130, 1653
SsiI CCGC 3 cut(s) 457, 489, 1605
SspMI CTAG 5 cut(s) 360, 395, 512, 561, 987
SstI GAGCTC 1 cut(s) 1716
StyD4I CCNGG 3 cut(s) 172, 364, 1585
TaaI ACNGT 5 cut(s) 82, 155, 267, 1279, 1444
TaiI ACGT 3 cut(s) 125, 877, 1518
TaqI TCGA 3 cut(s) 325, 887, 1104
TasI AATT 8 cut(s) 115, 305, 386, 746, 779, 1016, 1130, 1653
TauI GCSGC 1 cut(s) 492
TfiI GAWTC 5 cut(s) 408, 992, 1077, 1121, 1196
TscAI CASTG 3 cut(s) 85, 160, 1449
TseFI GTSAC 2 cut(s) 922, 1619
TseI GCWGC 7 cut(s) 196, 731, 812, 974, 1043, 1169, 1602
Tsp45I GTSAC 2 cut(s) 922, 1619
TspDTI ATGAA 8 cut(s) 656, 739, 948, 1016, 1113, 1346, 1412, 1578
TspGWI ACGGA 2 cut(s) 479, 1638
TspRI CASTG 3 cut(s) 85, 160, 1449
VpaK11BI GGWCC 3 cut(s) 459, 825, 1188
XapI RAATTY 3 cut(s) 305, 746, 1016
XceI RCATGY 2 cut(s) 1417, 1600
XmiI GTMKAC 2 cut(s) 476, 1148
XmnI GAANNNNTTC 1 cut(s) 1733
XspI CTAG 5 cut(s) 360, 395, 512, 561, 987
Zsp2I ATGCAT 1 cut(s) 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.