Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001977

Physical Location & Seq

Genomic Coordinates Forward (+)

29034439 .. 29035636

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1211800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCGAACTTCACCATTTCCCTCTGCAATTTCCCCTTCATTTTCCTCCTCTCCTCCTCCTACTTCCTAACCCTAACCCTAGCTGCGGAACCCATTTCTTCTTCCGAGCCCAAACCCCTAAACAACAGCAGCGGCAACCCCAACCCCAACTTCGATTCCGAAATTTTCCTCCTTGGCGACGCCGCGCTAGCAGGCGGTGGATCTTATGTCAACATTACGCGGCCGTCGGTCTCAAGCTCCGGTCTTCTCCTCCGCAGAAAACCCTTTAAATTTATCTACGGGAATCTCAGCAGCCCGGCGTCGTTTTCCACCGAGTTCGCATTCTCGATGACGCCTGGCGGCGGTGACGGCCTCTTGCTCGTCTTTGCTCCTGGAGATTTGGGGTCCAGATTGTCTGGTAAGGGCCCGTTTGGAATTAACGGTGAGGATCGGTTTCTGGGTATTGAATTTGATACTGAAATGAATGGAGATATGAATGATTTGAATGCTAATCACATAGGGGTAGATGTTGGTAGCTTTGTATCTCTAGCTGTTGGTAATGTTTCTGAATTGAATTTGGTGCTAAATAGTGGAGAAAAGTTGAAATGTTGGATTGATTATGATGCTAGTTCGAAACGATTGGAGATTAGGCTAGGCAAGGTGGATGAATCGAGGCCTTATAATCCGATTACAGCGTATGGGATAGATTTGTCGGGAATGTGGAGAGATGAGGATGTGTACGTAGGTATTAGCTCGTCAAATTCGAATGGCAATTCGTCGCAGATTAGCAGTGTGTATTCATGGAATTTTAGGCTTAGAAATGTTCCCAAGTCCATGCATTCTCTGCCGGTGAATCCGAGGGTGTATTTGGATGGTCACGGTAAGAGTTTGAGCATGGATAAACGAGGGGTTTGCCCTTTGACAGTTCTTGCTGGGATGATCTTCGTGACTGGGTGTGGAGCACTGGTGGCATTTGTGGTGCTGTTTTTGTCGGCTATTATCATCAGTAGGCACACGGAGTTCCCTGCTGAGTTGCCTGCAAAGCCTGTGGATTTTAGGTATGAGAAGATCGATGTAGTTGTAGAGAAAGATGCCAATGGTGTTAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

364

Amino Acids

39.19

Weight (kDa)

5.5

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	51 - 273	4.2e-41	Legume lectin domain
Lectin_L-type_dom	PF18483	98 - 248	1.3e-07	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09035 AT3G09190 AT5G01090
fragaria_vesca	FvH4_6g12300 FvH4_7g23770
malus_domestica	MD01G1145100.v1.1 MD07G1165700.v1.1 MD07G1211800.v1.1 MD12G1085400.v1.1
prunus_persica	Prupe.2G244400_v2.0.a1 Prupe.6G268200_v2.0.a1
pyrus_communis	pycom01g16450 pycom04g13040 pycom04g13050 pycom07g19500 pycom12g08030 pycom12g15000
rosa_chinensis	RchiOBHm_Chr1g0369101 RchiOBHm_Chr3g0464131
rosa_laevigata	RLG00000024720 RLG00000027158
rosa_multiflora	Rmu_sc0001552.1_g000037 Rmu_sc0003337.1_g000012 Rmu_sc0004250.1_g000019 Rmu_sc0010401.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288000 Rroxscaffold_6G00415970
rosa_rugosa	Rorug01G0348100 Rorug03G0070700
rosa_samantha	Rh1AG354900 Rh1BG318200 Rh1BG335600 Rh1CG332600 Rh1DG348900 Rh2BG629000 Rh2CG320200 Rh2DG640800 Rh3BG132100 Rh3CG134300 Rh3DG133300 Rh4DG353800 Rh6BG239800 Rh7DG015800
rosa_wichuraiana	Rw1G031320 Rw3G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AccII	CGCG	2 cut(s)	185, 220
AciI	CCGC	8 cut(s)	86, 132, 183, 195, 220, 253, 339, 342
AclWI	GGATC	2 cut(s)	208, 435
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	6 cut(s)	162, 269, 446, 553, 739, 784
AcyI	GRCGYC	3 cut(s)	180, 299, 332
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	2 cut(s)	85, 341
AgsI	TTSAA	4 cut(s)	446, 484, 553, 583
AjnI	CCWGG	2 cut(s)	334, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	5 cut(s)	83, 237, 516, 530, 732
AluI	AGCT	5 cut(s)	83, 237, 516, 530, 732
Alw21I	GWGCWC	1 cut(s)	943
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	208, 435
AoxI	GGCC	4 cut(s)	221, 349, 403, 653
ApaI	GGGCCC	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	83, 129, 291
ApoI	RAATTY	6 cut(s)	162, 269, 446, 553, 739, 784
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	384, 403, 404
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	4 cut(s)	4, 356, 434, 841
AsuII	TTCGAA	2 cut(s)	611, 743
AsuNHI	GCTAGC	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	384
BaeGI	GKGCMC	1 cut(s)	407
BanII	GRGCYC	2 cut(s)	111, 407
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	943
BbvI	GCAGC	3 cut(s)	70, 141, 303
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	2 cut(s)	208, 364
BcgI	CGANNNNNNTGC	2 cut(s)	873, 907
BciT130I	CCWGG	2 cut(s)	336, 372
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	5 cut(s)	80, 188, 527, 606, 632
BisI	GCNGC	7 cut(s)	84, 130, 133, 183, 221, 292, 340
BlsI	GCNGC	7 cut(s)	85, 131, 134, 184, 222, 293, 341
Bme1390I	CCNGG	3 cut(s)	296, 336, 372
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	3 cut(s)	384, 403, 404
BmiI	GGNNCC	3 cut(s)	90, 385, 405
BmrFI	CCNGG	3 cut(s)	296, 336, 372
BmrI	ACTGGG	1 cut(s)	939
BmsI	GCATC	2 cut(s)	592, 1060
BmtI	GCTAGC	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	939
BpiI	GAAGAC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	393
Bpu14I	TTCGAA	2 cut(s)	611, 743
BpuEI	CTTGAG	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	1050
BsaAI	YACGTR	1 cut(s)	721
BsaHI	GRCGYC	3 cut(s)	180, 299, 332
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	172, 836
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 341
Bse118I	RCCGGY	1 cut(s)	826
Bse1I	ACTGG	2 cut(s)	934, 948
BseBI	CCWGG	2 cut(s)	336, 372
BseCI	ATCGAT	1 cut(s)	1050
BseDI	CCNNGG	2 cut(s)	172, 836
BseGI	GGATG	4 cut(s)	649, 718, 856, 921
BseLI	CCNNNNNNNGG	2 cut(s)	85, 341
BseMII	CTCAG	2 cut(s)	301, 999
BseNI	ACTGG	2 cut(s)	934, 948
BseRI	GAGGAG	4 cut(s)	38, 43, 46, 239
BseSI	GKGCMC	1 cut(s)	407
BseX3I	CGGCCG	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	70, 141, 303
BseYI	CCCAGC	1 cut(s)	911
Bsh1236I	CGCG	2 cut(s)	185, 220
Bsh1285I	CGRYCG	1 cut(s)	224
BshFI	GGCC	4 cut(s)	223, 351, 405, 655
BshVI	ATCGAT	1 cut(s)	1050
BsiEI	CGRYCG	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	943
BsiSI	CCGG	3 cut(s)	240, 296, 827
BslI	CCNNNNNNNGG	2 cut(s)	85, 341
BsmAI	GTCTC	1 cut(s)	235
BsmI	GAATGC	3 cut(s)	320, 490, 817
BsnI	GGCC	4 cut(s)	223, 351, 405, 655
Bso31I	GGTCTC	1 cut(s)	235
Bsp119I	TTCGAA	2 cut(s)	611, 743
Bsp120I	GGGCCC	1 cut(s)	403
Bsp1286I	GDGCHC	3 cut(s)	111, 407, 943
Bsp143I	GATC	4 cut(s)	200, 427, 918, 1047
BspACI	CCGC	8 cut(s)	86, 132, 183, 195, 220, 253, 339, 342
BspANI	GGCC	4 cut(s)	223, 351, 405, 655
BspCNI	CTCAG	2 cut(s)	300, 1000
BspDI	ATCGAT	1 cut(s)	1050
BspFNI	CGCG	2 cut(s)	185, 220
BspLI	GGNNCC	3 cut(s)	90, 385, 405
BspOI	GCTAGC	1 cut(s)	191
BspPI	GGATC	2 cut(s)	208, 435
BspT104I	TTCGAA	2 cut(s)	611, 743
BspTNI	GGTCTC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	826
BsrI	ACTGG	2 cut(s)	934, 948
BssAI	RCCGGY	1 cut(s)	826
BssECI	CCNNGG	2 cut(s)	172, 836
BssMI	GATC	4 cut(s)	200, 427, 918, 1047
BssNI	GRCGYC	3 cut(s)	180, 299, 332
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	336, 372
Bst4CI	ACNGT	3 cut(s)	422, 860, 904
BstACI	GRCGYC	3 cut(s)	180, 299, 332
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstBAI	YACGTR	1 cut(s)	721
BstBI	TTCGAA	2 cut(s)	611, 743
BstC8I	GCNNGC	3 cut(s)	189, 193, 1017
BstDEI	CTNAG	3 cut(s)	287, 794, 1008
BstF5I	GGATG	4 cut(s)	649, 718, 856, 921
BstFNI	CGCG	2 cut(s)	185, 220
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	4 cut(s)	203, 430, 921, 1050
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	4 cut(s)	200, 427, 918, 1047
BstMCI	CGRYCG	1 cut(s)	224
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 348, 823, 947, 1021
BstNI	CCWGG	2 cut(s)	336, 372
BstSCI	CCNGG	3 cut(s)	294, 334, 370
BstSLI	GKGCMC	1 cut(s)	407
BstSNI	TACGTA	1 cut(s)	721
BstUI	CGCG	2 cut(s)	185, 220
BstV1I	GCAGC	3 cut(s)	70, 141, 303
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BstZI	CGGCCG	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	1050
BsuRI	GGCC	4 cut(s)	223, 351, 405, 655
BsuTUI	ATCGAT	1 cut(s)	1050
BtsCI	GGATG	4 cut(s)	649, 718, 856, 921
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	2 cut(s)	775, 941
Cac8I	GCNNGC	3 cut(s)	189, 193, 1017
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	826
Cfr13I	GGNCC	3 cut(s)	384, 403, 404
ClaI	ATCGAT	1 cut(s)	1050
CseI	GACGC	3 cut(s)	188, 288, 340
Csp6I	GTAC	1 cut(s)	718
CspCI	CAANNNNNGTGG	2 cut(s)	1008, 1043
CviAII	CATG	3 cut(s)	780, 814, 874
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	3 cut(s)	287, 794, 1008
DpnI	GATC	4 cut(s)	202, 429, 920, 1049
DpnII	GATC	4 cut(s)	200, 427, 918, 1047
DraI	TTTAAA	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	221
EagI	CGGCCG	1 cut(s)	221
EclXI	CGGCCG	1 cut(s)	221
Eco105I	TACGTA	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	655
Eco24I	GRGCYC	2 cut(s)	111, 407
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	384
Eco52I	CGGCCG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	334, 370
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	819
EcoT38I	GRGCYC	2 cut(s)	111, 407
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	3 cut(s)	783, 817, 877
FatI	CATG	3 cut(s)	779, 813, 873
Fnu4HI	GCNGC	7 cut(s)	84, 130, 133, 183, 221, 292, 340
FokI	GGATG	4 cut(s)	656, 725, 863, 928
FriOI	GRGCYC	2 cut(s)	111, 407
Fsp4HI	GCNGC	7 cut(s)	84, 130, 133, 183, 221, 292, 340
FspBI	CTAG	5 cut(s)	80, 188, 527, 606, 632
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	7 cut(s)	84, 130, 133, 183, 221, 292, 340
GsaI	CCCAGC	1 cut(s)	915
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	4 cut(s)	223, 351, 405, 655
HapII	CCGG	3 cut(s)	240, 296, 827
HgaI	GACGC	3 cut(s)	188, 288, 340
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	3 cut(s)	180, 299, 332
Hin1II	CATG	3 cut(s)	783, 817, 877
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	155, 283, 647, 832
HpaII	CCGG	3 cut(s)	240, 296, 827
HphI	GGTGA	4 cut(s)	4, 356, 434, 841
Hpy166II	GTNNAC	2 cut(s)	211, 718
Hpy188I	TCNGA	5 cut(s)	106, 160, 547, 666, 837
Hpy188III	TCNNGA	4 cut(s)	325, 387, 693, 925
Hpy8I	GTNNAC	2 cut(s)	211, 718
Hpy99I	CGWCG	4 cut(s)	182, 229, 304, 760
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	3 cut(s)	422, 860, 904
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	3 cut(s)	27, 817, 1019
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 348, 823, 947, 1021
HpyF3I	CTNAG	3 cut(s)	287, 794, 1008
HpySE526I	ACGT	1 cut(s)	720
Hsp92I	GRCGYC	3 cut(s)	180, 299, 332
Hsp92II	CATG	3 cut(s)	783, 817, 877
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	4 cut(s)	200, 427, 918, 1047
LmnI	GCTCC	3 cut(s)	242, 373, 938
Lsp1109I	GCAGC	3 cut(s)	70, 141, 303
LweI	GCATC	2 cut(s)	592, 1060
MaeI	CTAG	5 cut(s)	80, 188, 527, 606, 632
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	3 cut(s)	344, 854, 925
MalI	GATC	4 cut(s)	202, 429, 920, 1049
MboI	GATC	4 cut(s)	200, 427, 918, 1047
MboII	GAAGA	5 cut(s)	90, 93, 236, 913, 1057
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	3 cut(s)	111, 407, 943
MmeI	TCCRAC	1 cut(s)	569
Mph1103I	ATGCAT	1 cut(s)	819
MseI	TTAA	3 cut(s)	267, 417, 1083
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	3 cut(s)	240, 296, 827
MspR9I	CCNGG	3 cut(s)	296, 336, 372
Mva1269I	GAATGC	3 cut(s)	320, 490, 817
MvaI	CCWGG	2 cut(s)	336, 372
MvnI	CGCG	2 cut(s)	185, 220
MwoI	GCNNNNNNNGC	5 cut(s)	188, 348, 823, 947, 1021
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	4 cut(s)	200, 427, 918, 1047
NheI	GCTAGC	1 cut(s)	187
NlaIII	CATG	3 cut(s)	783, 817, 877
NlaIV	GGNNCC	3 cut(s)	90, 385, 405
NmuCI	GTSAC	3 cut(s)	344, 854, 925
NsiI	ATGCAT	1 cut(s)	819
NspV	TTCGAA	2 cut(s)	611, 743
PceI	AGGCCT	1 cut(s)	655
PcsI	WCGNNNNNNNCGW	1 cut(s)	740
PctI	GAATGC	3 cut(s)	320, 490, 817
PfeI	GAWTC	4 cut(s)	155, 283, 647, 832
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	7 cut(s)	85, 131, 134, 184, 222, 293, 341
Ppu21I	YACGTR	1 cut(s)	721
PsiI	TTATAA	1 cut(s)	660
Psp6I	CCWGG	2 cut(s)	334, 370
PspFI	CCCAGC	1 cut(s)	911
PspGI	CCWGG	2 cut(s)	334, 370
PspN4I	GGNNCC	3 cut(s)	90, 385, 405
PspOMI	GGGCCC	1 cut(s)	403
PspPI	GGNCC	3 cut(s)	384, 403, 404
PsuI	RGATCY	1 cut(s)	200
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
SaqAI	TTAA	3 cut(s)	267, 417, 1083
SatI	GCNGC	7 cut(s)	84, 130, 133, 183, 221, 292, 340
Sau3AI	GATC	4 cut(s)	200, 427, 918, 1047
Sau96I	GGNCC	3 cut(s)	384, 403, 404
ScrFI	CCNGG	3 cut(s)	296, 336, 372
SduI	GDGCHC	3 cut(s)	111, 407, 943
SetI	ASST	9 cut(s)	85, 239, 518, 532, 642, 723, 727, 734, 1040
SfaNI	GCATC	2 cut(s)	592, 1060
SfuI	TTCGAA	2 cut(s)	611, 743
SinI	GGWCC	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
SnaBI	TACGTA	1 cut(s)	721
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	8 cut(s)	86, 132, 183, 195, 220, 253, 339, 342
SspMI	CTAG	5 cut(s)	80, 188, 527, 606, 632
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	3 cut(s)	294, 334, 370
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	422, 860, 904
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	6 cut(s)	153, 326, 611, 650, 743, 1050
TaqII	GACCGA	1 cut(s)	217
TauI	GCSGC	4 cut(s)	135, 185, 223, 342
TfiI	GAWTC	4 cut(s)	155, 283, 647, 832
Tru1I	TTAA	3 cut(s)	267, 417, 1083
Tru9I	TTAA	3 cut(s)	267, 417, 1083
TscAI	CASTG	2 cut(s)	775, 948
TseFI	GTSAC	3 cut(s)	344, 854, 925
TseI	GCWGC	3 cut(s)	83, 129, 291
Tsp45I	GTSAC	3 cut(s)	344, 854, 925
TspDTI	ATGAA	5 cut(s)	28, 476, 488, 660, 768
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	2 cut(s)	775, 948
VpaK11BI	GGWCC	1 cut(s)	384
XapI	RAATTY	6 cut(s)	162, 269, 446, 553, 739, 784
XspI	CTAG	5 cut(s)	80, 188, 527, 606, 632
Zsp2I	ATGCAT	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.