Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001977

Physical Location & Seq

Genomic Coordinates Reverse (-)

9122955 .. 9124064

Gene Structure 1110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTAAGTTCACCATTTCCAACTGCAGTTTCCCCTTCATTTTGCTCCTCTTCCCCTTCTACTCCCTAACCCTAACCCTAATTGCAAAACCCATTTCTTCTTCTTCGCTCCAAGCCCTTAACACCACCAACCCCCAAAATTTCGATTCCGAAATTGCCCTCTTCGGCGACGCCGCGGACGGCGGCTCTTACGTGAACCTCACTCGCAGATCGGCCTCAAGCTCCGGTCTTCTCCTCCGCCGAAAGCCCTTTAAAGTCGCGGACGCGAATCTCAGCAATCCGGCGTCGTTTTCGTCCGAATTGATCTTCTCGATCACGCCCGGCAACGGCGATGGTATTGTGGTCGTTTTCGTTCCCGGCGATTTGGGCTCGAGGTTCTCCGGTAAGGGCCCGTTTGGGCTTGACGGTGAGAATCGATTTCTGGGTATTGAATTCGATACTGAAATGAATGAAAATGTGAATGACGTGAATGCGAATCATATAGGGGTGAATGTGGGTAGCTTTGTATCCGTGACTGTTGGGAATGTTACTGCATTGAATTTGGTGCTTAATAGTGGAGAAAAGATGAAATCTTGGATTGATTATGACGCTAGTTCGAAAAGATTAGAGATAAGGTTGAGTAAGATTGGTGAACCAAGGCCTTATAATCCGATTGTTGCACATGGCATAGATTTGTTGGCAATGTGGAAGGATAAGGATGTGTATATAGGGATAAGCTCGTCGAATTCGAATGGCAGTTCCTCGCAAATTAGTAGCGTGTATTCTTGGAGTTTTAGGATGAGAAAGGTTCCGAGGATGCATTCGCTTCCGGTGAATCCGAGGGGTTATTTGGATGATCAGCATGGTGGAAATCCGGGTCTGCATAAGAGGATGGCTTGTCCATTGTCAATTCTTGCTGGGATTATATTCATGACTGGGTGTGGAGCTCTGGTTTCATTTGTCATGCTGTTTTTGTGGGCTATAATTGTTAACAGGCACACGGTTTTCCCTGCTGAAGTGCTCCCAGCTGAGTTTCCGGTGAAGCCTAATCCTACGGATTTCAGGTATGAGAGGATCAGTGTAGTTGTAGAGGAAGATGCAGATGCAGATGCAGATGGTGTTAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

370

Amino Acids

40.12

Weight (kDa)

6.32

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_L-type_dom	PF18483	44 - 243	3.6e-07	Legume lectin beta-barrel domain
Lectin_legB	PF00139	47 - 265	2.3e-41	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09035 AT3G09190 AT5G01090
fragaria_vesca	FvH4_6g12300 FvH4_7g23770
malus_domestica	MD01G1145100.v1.1 MD07G1165700.v1.1 MD07G1211800.v1.1 MD12G1085400.v1.1
prunus_persica	Prupe.2G244400_v2.0.a1 Prupe.6G268200_v2.0.a1
pyrus_communis	pycom01g16450 pycom04g13040 pycom04g13050 pycom07g19500 pycom12g08030 pycom12g15000
rosa_chinensis	RchiOBHm_Chr1g0369101 RchiOBHm_Chr3g0464131
rosa_laevigata	RLG00000024720 RLG00000027158
rosa_multiflora	Rmu_sc0001552.1_g000037 Rmu_sc0003337.1_g000012 Rmu_sc0004250.1_g000019 Rmu_sc0010401.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288000 Rroxscaffold_6G00415970
rosa_rugosa	Rorug01G0348100 Rorug03G0070700
rosa_samantha	Rh1AG354900 Rh1BG318200 Rh1BG335600 Rh1CG332600 Rh1DG348900 Rh2BG629000 Rh2CG320200 Rh2DG640800 Rh3BG132100 Rh3CG134300 Rh3DG133300 Rh4DG353800 Rh6BG239800 Rh7DG015800
rosa_wichuraiana	Rw1G031320 Rw3G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AccII	CGCG	3 cut(s)	176, 260, 266
AciI	CCGC	5 cut(s)	174, 176, 183, 238, 260
AclWI	GGATC	1 cut(s)	1061
AcsI	RAATTY	4 cut(s)	139, 431, 538, 724
AcuI	CTGAAG	1 cut(s)	1014
AcyI	GRCGYC	2 cut(s)	171, 284
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	431, 538
AjiI	CACGTC	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	5 cut(s)	222, 501, 717, 926, 1007
AluI	AGCT	5 cut(s)	222, 501, 717, 926, 1007
Alw21I	GWGCWC	2 cut(s)	928, 1002
AlwI	GGATC	1 cut(s)	1061
Ama87I	CYCGRG	1 cut(s)	370
AoxI	GGCC	3 cut(s)	213, 388, 638
ApaI	GGGCCC	1 cut(s)	392
ApoI	RAATTY	4 cut(s)	139, 431, 538, 724
AspS9I	GGNCC	2 cut(s)	388, 389
AsuC2I	CCSGG	3 cut(s)	321, 357, 855
AsuHPI	GGTGA	6 cut(s)	4, 419, 499, 641, 823, 1030
AsuII	TTCGAA	2 cut(s)	596, 728
AvaI	CYCGRG	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	392
BanII	GRGCYC	3 cut(s)	371, 392, 928
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	928, 1002
BccI	CCATC	3 cut(s)	326, 865, 1088
BceAI	ACGGC	2 cut(s)	196, 343
BciVI	GTATCC	1 cut(s)	517
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	3 cut(s)	321, 357, 855
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	1 cut(s)	25
BfuI	GTATCC	1 cut(s)	517
BisI	GCNGC	2 cut(s)	174, 184
BlsI	GCNGC	2 cut(s)	175, 185
Bme1390I	CCNGG	3 cut(s)	321, 357, 855
BmeT110I	CYCGRG	1 cut(s)	370
BmgBI	CACGTC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	388, 389
BmiI	GGNNCC	2 cut(s)	390, 789
BmrFI	CCNGG	3 cut(s)	321, 357, 855
BmrI	ACTGGG	1 cut(s)	924
BmsI	GCATC	4 cut(s)	786, 1066, 1072, 1078
BmuI	ACTGGG	1 cut(s)	924
BpiI	GAAGAC	1 cut(s)	221
Bpu14I	TTCGAA	2 cut(s)	596, 728
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	3 cut(s)	321, 357, 855
Bsa29I	ATCGAT	1 cut(s)	415
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	2 cut(s)	171, 284
BsaJI	CCNNGG	4 cut(s)	174, 635, 791, 818
BsaWI	WCCGGW	4 cut(s)	224, 380, 808, 1015
BsaXI	ACNNNNNCTCC	2 cut(s)	915, 945
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	919
Bse3DI	GCAATG	1 cut(s)	687
BseCI	ATCGAT	1 cut(s)	415
BseDI	CCNNGG	4 cut(s)	174, 635, 791, 818
BseGI	GGATG	5 cut(s)	703, 783, 801, 838, 876
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	2 cut(s)	286, 999
BseNI	ACTGG	1 cut(s)	919
BseRI	GAGGAG	2 cut(s)	38, 224
BseSI	GKGCMC	1 cut(s)	392
BseYI	CCCAGC	2 cut(s)	896, 1003
Bsh1236I	CGCG	3 cut(s)	176, 260, 266
BshFI	GGCC	3 cut(s)	215, 390, 640
BshVI	ATCGAT	1 cut(s)	415
BsiHKAI	GWGCWC	2 cut(s)	928, 1002
BsiHKCI	CYCGRG	1 cut(s)	370
BsiSI	CCGG	8 cut(s)	225, 281, 321, 357, 381, 809, 854, 1016
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmI	GAATGC	2 cut(s)	475, 799
BsnI	GGCC	3 cut(s)	215, 390, 640
BsoBI	CYCGRG	1 cut(s)	370
Bsp119I	TTCGAA	2 cut(s)	596, 728
Bsp120I	GGGCCC	1 cut(s)	388
Bsp1286I	GDGCHC	4 cut(s)	371, 392, 928, 1002
Bsp143I	GATC	5 cut(s)	209, 303, 312, 835, 1053
BspACI	CCGC	5 cut(s)	174, 176, 183, 238, 260
BspANI	GGCC	3 cut(s)	215, 390, 640
BspCNI	CTCAG	2 cut(s)	285, 1000
BspDI	ATCGAT	1 cut(s)	415
BspFNI	CGCG	3 cut(s)	176, 260, 266
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	2 cut(s)	390, 789
BspMAI	CTGCAG	1 cut(s)	29
BspPI	GGATC	1 cut(s)	1061
BspT104I	TTCGAA	2 cut(s)	596, 728
BsrDI	GCAATG	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	919
BssECI	CCNNGG	4 cut(s)	174, 635, 791, 818
BssMI	GATC	5 cut(s)	209, 303, 312, 835, 1053
BssNI	GRCGYC	2 cut(s)	171, 284
BssT1I	CCWWGG	1 cut(s)	635
Bst4CI	ACNGT	3 cut(s)	407, 517, 982
Bst6I	CTCTTC	2 cut(s)	56, 167
BstACI	GRCGYC	2 cut(s)	171, 284
BstBAI	YACGTR	1 cut(s)	193
BstBI	TTCGAA	2 cut(s)	596, 728
BstDEI	CTNAG	3 cut(s)	6, 272, 1008
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	5 cut(s)	703, 783, 801, 838, 876
BstFNI	CGCG	3 cut(s)	176, 260, 266
BstKTI	GATC	5 cut(s)	212, 306, 315, 838, 1056
BstMBI	GATC	5 cut(s)	209, 303, 312, 835, 1053
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstSCI	CCNGG	3 cut(s)	319, 355, 853
BstSFI	CTRYAG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	3 cut(s)	176, 260, 266
BstV2I	GAAGAC	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	517
BsuRI	GGCC	3 cut(s)	215, 390, 640
BsuTUI	ATCGAT	1 cut(s)	415
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	466
BtsCI	GGATG	5 cut(s)	703, 783, 801, 838, 876
BtsIMutI	CAGTG	1 cut(s)	1063
CciI	TCATGA	1 cut(s)	909
Cfr13I	GGNCC	2 cut(s)	388, 389
Cfr42I	CCGCGG	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	415
CseI	GACGC	4 cut(s)	179, 272, 273, 596
CviAII	CATG	4 cut(s)	662, 842, 910, 943
DdeI	CTNAG	3 cut(s)	6, 272, 1008
DpnI	GATC	5 cut(s)	211, 305, 314, 837, 1055
DpnII	GATC	5 cut(s)	209, 303, 312, 835, 1053
DraI	TTTAAA	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	56, 167
EarI	CTCTTC	2 cut(s)	56, 167
EciI	GGCGGA	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	926
Eco130I	CCWWGG	1 cut(s)	635
Eco147I	AGGCCT	1 cut(s)	640
Eco24I	GRGCYC	3 cut(s)	371, 392, 928
Eco53kI	GAGCTC	1 cut(s)	926
Eco57I	CTGAAG	1 cut(s)	1014
Eco88I	CYCGRG	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	926
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	2 cut(s)	431, 724
EcoT14I	CCWWGG	1 cut(s)	635
EcoT22I	ATGCAT	1 cut(s)	801
EcoT38I	GRGCYC	3 cut(s)	371, 392, 928
ErhI	CCWWGG	1 cut(s)	635
FaeI	CATG	4 cut(s)	665, 845, 913, 946
FatI	CATG	4 cut(s)	661, 841, 909, 942
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	2 cut(s)	174, 184
FokI	GGATG	5 cut(s)	710, 790, 808, 845, 883
FriOI	GRGCYC	3 cut(s)	371, 392, 928
Fsp4HI	GCNGC	2 cut(s)	174, 184
FspBI	CTAG	1 cut(s)	591
GluI	GCNGC	2 cut(s)	174, 184
GsaI	CCCAGC	2 cut(s)	900, 1007
HaeIII	GGCC	3 cut(s)	215, 390, 640
HapII	CCGG	8 cut(s)	225, 281, 321, 357, 381, 809, 854, 1016
HgaI	GACGC	4 cut(s)	179, 272, 273, 596
Hin1I	GRCGYC	2 cut(s)	171, 284
Hin1II	CATG	4 cut(s)	665, 845, 913, 946
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HinfI	GANTC	5 cut(s)	146, 268, 412, 475, 814
HpaI	GTTAAC	1 cut(s)	970
HpaII	CCGG	8 cut(s)	225, 281, 321, 357, 381, 809, 854, 1016
HphI	GGTGA	6 cut(s)	4, 419, 499, 641, 823, 1030
Hpy166II	GTNNAC	4 cut(s)	12, 196, 632, 970
Hpy188I	TCNGA	5 cut(s)	151, 298, 651, 792, 819
Hpy188III	TCNNGA	2 cut(s)	310, 910
Hpy8I	GTNNAC	4 cut(s)	12, 196, 632, 970
Hpy99I	CGWCG	3 cut(s)	173, 289, 724
HpyAV	CCTTC	3 cut(s)	46, 67, 682
HpyCH4III	ACNGT	3 cut(s)	407, 517, 982
HpyCH4IV	ACGT	2 cut(s)	192, 465
HpyCH4V	TGCA	9 cut(s)	27, 86, 533, 659, 799, 862, 1079, 1085, 1091
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	3 cut(s)	6, 272, 1008
HpySE526I	ACGT	2 cut(s)	192, 465
Hsp92I	GRCGYC	2 cut(s)	171, 284
Hsp92II	CATG	4 cut(s)	665, 845, 913, 946
Ksp22I	TGATCA	1 cut(s)	835
KspAI	GTTAAC	1 cut(s)	970
KspI	CCGCGG	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	209, 303, 312, 835, 1053
LmnI	GCTCC	5 cut(s)	51, 114, 227, 923, 1005
LweI	GCATC	4 cut(s)	786, 1066, 1072, 1078
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	2 cut(s)	192, 465
MaeIII	GTNAC	2 cut(s)	511, 526
MalI	GATC	5 cut(s)	211, 305, 314, 837, 1055
MboI	GATC	5 cut(s)	209, 303, 312, 835, 1053
MboII	GAAGA	8 cut(s)	43, 90, 93, 96, 154, 221, 298, 1085
MhlI	GDGCHC	4 cut(s)	371, 392, 928, 1002
MmeI	TCCRAC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	801
MseI	TTAA	5 cut(s)	120, 252, 549, 969, 1101
MspA1I	CMGCKG	2 cut(s)	176, 1007
MspI	CCGG	8 cut(s)	225, 281, 321, 357, 381, 809, 854, 1016
MspR9I	CCNGG	3 cut(s)	321, 357, 855
Mva1269I	GAATGC	2 cut(s)	475, 799
MvnI	CGCG	3 cut(s)	176, 260, 266
MwoI	GCNNNNNNNGC	1 cut(s)	366
NciI	CCSGG	3 cut(s)	321, 357, 855
NdeII	GATC	5 cut(s)	209, 303, 312, 835, 1053
NlaIII	CATG	4 cut(s)	665, 845, 913, 946
NlaIV	GGNNCC	2 cut(s)	390, 789
NmuCI	GTSAC	1 cut(s)	511
NsiI	ATGCAT	1 cut(s)	801
NspV	TTCGAA	2 cut(s)	596, 728
PaeR7I	CTCGAG	1 cut(s)	370
PagI	TCATGA	1 cut(s)	909
PceI	AGGCCT	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 725
PctI	GAATGC	2 cut(s)	475, 799
PfeI	GAWTC	5 cut(s)	146, 268, 412, 475, 814
PkrI	GCNGC	2 cut(s)	175, 185
Ppu21I	YACGTR	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	928
PspFI	CCCAGC	2 cut(s)	896, 1003
PspN4I	GGNNCC	2 cut(s)	390, 789
PspOMI	GGGCCC	1 cut(s)	388
PspPI	GGNCC	2 cut(s)	388, 389
PspXI	VCTCGAGB	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	1007
SacI	GAGCTC	1 cut(s)	928
SacII	CCGCGG	1 cut(s)	177
SaqAI	TTAA	5 cut(s)	120, 252, 549, 969, 1101
SatI	GCNGC	2 cut(s)	174, 184
Sau3AI	GATC	5 cut(s)	209, 303, 312, 835, 1053
Sau96I	GGNCC	2 cut(s)	388, 389
ScrFI	CCNGG	3 cut(s)	321, 357, 855
SduI	GDGCHC	4 cut(s)	371, 392, 928, 1002
SfaNI	GCATC	4 cut(s)	786, 1066, 1072, 1078
SfcI	CTRYAG	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	370
Sfr303I	CCGCGG	1 cut(s)	177
SfuI	TTCGAA	2 cut(s)	596, 728
SgrBI	CCGCGG	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	370
SmlI	CTYRAG	2 cut(s)	217, 370
SmoI	CTYRAG	2 cut(s)	217, 370
SseBI	AGGCCT	1 cut(s)	640
SsiI	CCGC	5 cut(s)	174, 176, 183, 238, 260
SspMI	CTAG	1 cut(s)	591
SstI	GAGCTC	1 cut(s)	928
StuI	AGGCCT	1 cut(s)	640
StyD4I	CCNGG	3 cut(s)	319, 355, 853
StyI	CCWWGG	1 cut(s)	635
TaaI	ACNGT	3 cut(s)	407, 517, 982
TaiI	ACGT	2 cut(s)	195, 468
TaqI	TCGA	8 cut(s)	144, 311, 371, 415, 435, 596, 722, 728
TauI	GCSGC	2 cut(s)	176, 186
TfiI	GAWTC	5 cut(s)	146, 268, 412, 475, 814
Tru1I	TTAA	5 cut(s)	120, 252, 549, 969, 1101
Tru9I	TTAA	5 cut(s)	120, 252, 549, 969, 1101
TscAI	CASTG	1 cut(s)	1063
TseFI	GTSAC	1 cut(s)	511
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	6 cut(s)	28, 461, 465, 581, 898, 924
TspGWI	ACGGA	2 cut(s)	499, 1049
TspRI	CASTG	1 cut(s)	1063
XapI	RAATTY	4 cut(s)	139, 431, 538, 724
XhoI	CTCGAG	1 cut(s)	370
XspI	CTAG	1 cut(s)	591
Zsp2I	ATGCAT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.