pycom12g15000

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0001977
Physical Location & Seq
Forward (+)
17438667 .. 17439722
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g15000.1

Sequence Viewer

Length: 1056 bp
ATGGCCGCATCTTCCATCTCCCACCACTTCGCCGCCGTGGCTTTCCTTATTTTCTTCCTTAGAACCACTTCCACCGCCTCCAACTCCTCCTTTTCGTTCACCCATTTCGGTAAAGTTTCAAACTTTGGGTCAGATATTGCTCTGTACGGATATGCAGAGGTCGTCAATGGCGGATACGCAGTTCAGCTCACGAGTTCTGTGAGCTCGAGCGCCGGCCGAGCTGTTTACAAGAAACCCATGAAGCTGTATGAAGGTAAGCCTCGGAAATCCGTGTCTTTTTCGACGAACTTCTCGTTTTCTATTTCCAACGGCGGTGGGGATGGATTGGCGTTTGTACTGATTCCAATGGGTTTTAATCTTAGCGTATTTGGTAACGGCTCTTTTGGGCTTTCTCTGCGAAATGGTGAAAGTAAATTCAAAGTTGTTGCTGTTAAATTTGATGCATTGAGTGATGGAAAAGTTCATGTTGGAATTGATGTGGGTAGTTCTGTTTCTGCTAAAGTAAGCAATGTTTCTGCTAAGAATTTGGGTCCAAGTAGAGGGAATAAAACGCAAGGTTGGATCGATTACGAAGCGGGTTCGAATCGATTGGAAGTTAGGCTGAGTAAATTCGGTGGTTCGAAGCCTGTTGATCCTCTGCTGTGGTATCCGATTGATTTGTCGAAAATGTGGGGAGATAAGGAAGTGTTTGTGGCATTGAGTGCAATGAGTAGGAATTCGTCTCAGACATGTTCTGTGTACTCTTGGAGCTTTGAGCAACGGCATGTGCCTCACTGGATGCACTCGCAGCCGCTAGATCCCAAGGCCGTTGCTAAGAACTCGAAGGCGAAGGCGTTGGAAAAGAAGAAGAATTGTACAGAAAGGGCTTTCGGAGCAATGGTTTTCGGTGTTGCTTGTGGAGCATTGGCGGCGTTTGTTGGACTGTATCTGTGGACCGTCCTTGGCAATAGGCGTCCGGTGGTGCCTGAGGAGTATGCTGAGAAGTCGAAAGAGTTTGAGTACGAGAAAATGAAAGTAGTTGCAGATAATAAAACCATCGAAGATGGAAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

352

Amino Acids

38.07

Weight (kDa)

9.54

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 29 - 264 2.4e-51 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 961
AciI CCGC 8 cut(s) 6, 33, 75, 171, 312, 575, 791, 908
AclWI GGATC 3 cut(s) 569, 626, 791
AcoI YGGCCR 2 cut(s) 3, 214
AcsI RAATTY 5 cut(s) 413, 434, 523, 608, 715
AcyI GRCGYC 1 cut(s) 952
AfaI GTAC 5 cut(s) 146, 336, 740, 856, 1001
AfiI CCNNNNNNNGG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 728
AgsI TTSAA 2 cut(s) 120, 418
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
AluBI AGCT 5 cut(s) 187, 204, 221, 244, 750
AluI AGCT 5 cut(s) 187, 204, 221, 244, 750
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 726
AlwI GGATC 3 cut(s) 569, 626, 791
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 3 cut(s) 3, 214, 804
ApeKI GCWGC 1 cut(s) 787
ApoI RAATTY 5 cut(s) 413, 434, 523, 608, 715
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
Asp700I GAANNNNTTC 1 cut(s) 67
AspLEI GCGC 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 530, 933
AsuHPI GGTGA 2 cut(s) 91, 416
AsuII TTCGAA 2 cut(s) 581, 620
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 2 cut(s) 530, 933
AxyI CCTNAGG 1 cut(s) 966
BanI GGYRCC 1 cut(s) 961
BanII GRGCYC 1 cut(s) 206
BauI CACGAG 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 799
BccI CCATC 5 cut(s) 23, 314, 446, 1037, 1043
BceAI ACGGC 5 cut(s) 20, 325, 391, 776, 791
BciVI GTATCC 2 cut(s) 167, 657
BcoDI GTCTC 1 cut(s) 726
BfaI CTAG 1 cut(s) 794
BfoI RGCGCY 1 cut(s) 213
BfuI GTATCC 2 cut(s) 167, 657
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 5 cut(s) 6, 33, 788, 791, 909
BlsI GCNGC 5 cut(s) 7, 34, 789, 792, 910
Bme18I GGWCC 2 cut(s) 530, 933
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 530, 933
BmiI GGNNCC 2 cut(s) 531, 963
BmsI GCATC 3 cut(s) 17, 430, 768
Bpu14I TTCGAA 2 cut(s) 581, 620
Bsa29I ATCGAT 2 cut(s) 564, 586
BsaHI GRCGYC 1 cut(s) 952
BsaJI CCNNGG 4 cut(s) 36, 260, 801, 940
BsaWI WCCGGW 1 cut(s) 955
BsaXI ACNNNNNCTCC 2 cut(s) 864, 894
Bsc4I CCNNNNNNNGG 1 cut(s) 539
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 779
Bse21I CCTNAGG 1 cut(s) 966
Bse3DI GCAATG 3 cut(s) 514, 711, 882
BseCI ATCGAT 2 cut(s) 564, 586
BseDI CCNNGG 4 cut(s) 36, 260, 801, 940
BseGI GGATG 2 cut(s) 325, 783
BseLI CCNNNNNNNGG 1 cut(s) 539
BseMI GCAATG 3 cut(s) 514, 711, 882
BseMII CTCAG 4 cut(s) 593, 737, 957, 969
BseNI ACTGG 1 cut(s) 779
BseRI GAGGAG 2 cut(s) 76, 983
BseX3I CGGCCG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 799
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 3 cut(s) 5, 216, 806
BshNI GGYRCC 1 cut(s) 961
BshVI ATCGAT 2 cut(s) 564, 586
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 2 cut(s) 213, 956
BslI CCNNNNNNNGG 1 cut(s) 539
BsmAI GTCTC 1 cut(s) 726
BsmBI CGTCTC 1 cut(s) 726
BsnI GGCC 3 cut(s) 5, 216, 806
BsoBI CYCGRG 1 cut(s) 205
Bsp119I TTCGAA 2 cut(s) 581, 620
Bsp1286I GDGCHC 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 854
Bsp143I GATC 3 cut(s) 561, 631, 796
BspACI CCGC 8 cut(s) 6, 33, 75, 171, 312, 575, 791, 908
BspANI GGCC 3 cut(s) 5, 216, 806
BspCNI CTCAG 4 cut(s) 594, 736, 958, 970
BspDI ATCGAT 2 cut(s) 564, 586
BspLI GGNNCC 2 cut(s) 531, 963
BspPI GGATC 3 cut(s) 569, 626, 791
BspT104I TTCGAA 2 cut(s) 581, 620
BspT107I GGYRCC 1 cut(s) 961
BsrDI GCAATG 3 cut(s) 514, 711, 882
BsrFI RCCGGY 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 854
BsrI ACTGG 1 cut(s) 779
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 4 cut(s) 36, 260, 801, 940
BssMI GATC 3 cut(s) 561, 631, 796
BssNI GRCGYC 1 cut(s) 952
BssSI CACGAG 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 801, 940
Bst2BI CACGAG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 924, 937
BstACI GRCGYC 1 cut(s) 952
BstAPI GCANNNNNTGC 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 854
BstBI TTCGAA 2 cut(s) 581, 620
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 8 cut(s) 59, 359, 519, 602, 723, 813, 966, 978
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 2 cut(s) 325, 783
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 3 cut(s) 564, 634, 799
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 3 cut(s) 561, 631, 796
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 8 cut(s) 38, 218, 394, 701, 787, 872, 899, 908
BstNSI RCATGY 2 cut(s) 732, 767
BstV1I GCAGC 1 cut(s) 799
BstX2I RGATCY 1 cut(s) 796
BstYI RGATCY 1 cut(s) 796
BstZI CGGCCG 1 cut(s) 214
Bsu15I ATCGAT 2 cut(s) 564, 586
Bsu36I CCTNAGG 1 cut(s) 966
BsuI GTATCC 2 cut(s) 167, 657
BsuRI GGCC 3 cut(s) 5, 216, 806
BsuTUI ATCGAT 2 cut(s) 564, 586
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 325, 783
BtsIMutI CAGTG 1 cut(s) 772
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 530, 933
ClaI ATCGAT 2 cut(s) 564, 586
CseI GACGC 1 cut(s) 941
Csp6I GTAC 5 cut(s) 145, 335, 739, 855, 1000
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 4 cut(s) 238, 464, 729, 764
CviQI GTAC 5 cut(s) 145, 335, 739, 855, 1000
DdeI CTNAG 8 cut(s) 59, 359, 519, 602, 723, 813, 966, 978
DpnI GATC 3 cut(s) 563, 633, 798
DpnII GATC 3 cut(s) 561, 631, 796
EaeI YGGCCR 2 cut(s) 3, 214
EagI CGGCCG 1 cut(s) 214
EciI GGCGGA 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 204
EclXI CGGCCG 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 801, 940
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 2 cut(s) 530, 933
Eco52I CGGCCG 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 204
Eco81I CCTNAGG 1 cut(s) 966
Eco88I CYCGRG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 204
EcoRI GAATTC 1 cut(s) 715
EcoT14I CCWWGG 2 cut(s) 801, 940
EcoT22I ATGCAT 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 2 cut(s) 801, 940
Esp3I CGTCTC 1 cut(s) 726
FaeI CATG 4 cut(s) 241, 467, 732, 767
FaiI YATR 7 cut(s) 153, 239, 249, 465, 730, 765, 975
FatI CATG 4 cut(s) 237, 463, 728, 763
FauI CCCGC 1 cut(s) 568
Fnu4HI GCNGC 5 cut(s) 6, 33, 788, 791, 909
FokI GGATG 2 cut(s) 332, 790
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 5 cut(s) 6, 33, 788, 791, 909
FspBI CTAG 1 cut(s) 794
GlaI GCGC 1 cut(s) 211
GluI GCNGC 5 cut(s) 6, 33, 788, 791, 909
HaeII RGCGCY 1 cut(s) 213
HaeIII GGCC 3 cut(s) 5, 216, 806
HapII CCGG 2 cut(s) 213, 956
HgaI GACGC 1 cut(s) 941
HhaI GCGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 952
Hin1II CATG 4 cut(s) 241, 467, 732, 767
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 2 cut(s) 340, 583
HpaII CCGG 2 cut(s) 213, 956
HphI GGTGA 2 cut(s) 91, 416
Hpy166II GTNNAC 4 cut(s) 99, 226, 739, 933
Hpy188I TCNGA 5 cut(s) 133, 264, 651, 726, 872
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 4 cut(s) 99, 226, 739, 933
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 3 cut(s) 245, 817, 823
HpyCH4III ACNGT 2 cut(s) 924, 937
HpyCH4V TGCA 5 cut(s) 155, 443, 704, 781, 1022
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 218, 394, 701, 787, 872, 899, 908
HpyF3I CTNAG 8 cut(s) 59, 359, 519, 602, 723, 813, 966, 978
Hsp92I GRCGYC 1 cut(s) 952
Hsp92II CATG 4 cut(s) 241, 467, 732, 767
HspAI GCGC 1 cut(s) 210
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Kzo9I GATC 3 cut(s) 561, 631, 796
LmnI GCTCC 3 cut(s) 747, 872, 899
LpnPI CCDG 5 cut(s) 226, 639, 760, 969, 978
Lsp1109I GCAGC 1 cut(s) 799
LweI GCATC 3 cut(s) 17, 430, 768
MaeI CTAG 1 cut(s) 794
MaeIII GTNAC 1 cut(s) 371
MalI GATC 3 cut(s) 563, 633, 798
MboI GATC 3 cut(s) 561, 631, 796
MboII GAAGA 5 cut(s) 3, 46, 856, 859, 1052
MflI RGATCY 1 cut(s) 796
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 7 cut(s) 413, 434, 471, 523, 608, 715, 850
MmeI TCCRAC 6 cut(s) 105, 330, 448, 539, 816, 898
MnlI CCTC 8 cut(s) 88, 97, 151, 270, 533, 645, 780, 961
Mph1103I ATGCAT 1 cut(s) 445
MroNI GCCGGC 1 cut(s) 212
MroXI GAANNNNTTC 1 cut(s) 67
MseI TTAA 2 cut(s) 354, 432
MspI CCGG 2 cut(s) 213, 956
MwoI GCNNNNNNNGC 8 cut(s) 38, 218, 394, 701, 787, 872, 899, 908
NaeI GCCGGC 1 cut(s) 214
NdeII GATC 3 cut(s) 561, 631, 796
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 4 cut(s) 241, 467, 732, 767
NlaIV GGNNCC 2 cut(s) 531, 963
NmeAIII GCCGAG 1 cut(s) 242
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 2 cut(s) 732, 767
NspV TTCGAA 2 cut(s) 581, 620
PaeR7I CTCGAG 1 cut(s) 205
PciI ACATGT 1 cut(s) 728
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PdiI GCCGGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 340, 583
PkrI GCNGC 5 cut(s) 7, 34, 789, 792, 910
PscI ACATGT 1 cut(s) 728
Psp124BI GAGCTC 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 531, 963
PspPI GGNCC 2 cut(s) 530, 933
PspXI VCTCGAGB 1 cut(s) 205
PsuI RGATCY 1 cut(s) 796
RsaI GTAC 5 cut(s) 146, 336, 740, 856, 1001
RsaNI GTAC 5 cut(s) 145, 335, 739, 855, 1000
SacI GAGCTC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 354, 432
SatI GCNGC 5 cut(s) 6, 33, 788, 791, 909
Sau3AI GATC 3 cut(s) 561, 631, 796
Sau96I GGNCC 2 cut(s) 530, 933
SduI GDGCHC 1 cut(s) 206
SetI ASST 8 cut(s) 162, 189, 206, 223, 246, 256, 559, 752
SfaNI GCATC 3 cut(s) 17, 430, 768
Sfr274I CTCGAG 1 cut(s) 205
SfuI TTCGAA 2 cut(s) 581, 620
SinI GGWCC 2 cut(s) 530, 933
SlaI CTCGAG 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 7 cut(s) 413, 434, 471, 523, 608, 715, 850
SsiI CCGC 8 cut(s) 6, 33, 75, 171, 312, 575, 791, 908
SspMI CTAG 1 cut(s) 794
SstI GAGCTC 1 cut(s) 206
StyI CCWWGG 2 cut(s) 801, 940
TaaI ACNGT 2 cut(s) 924, 937
TasI AATT 7 cut(s) 413, 434, 471, 523, 608, 715, 850
TatI WGTACW 3 cut(s) 334, 738, 854
TauI GCSGC 4 cut(s) 8, 35, 793, 911
TfiI GAWTC 2 cut(s) 340, 583
Tru1I TTAA 2 cut(s) 354, 432
Tru9I TTAA 2 cut(s) 354, 432
TscAI CASTG 1 cut(s) 779
TseI GCWGC 1 cut(s) 787
TspDTI ATGAA 4 cut(s) 254, 264, 452, 1025
TspGWI ACGGA 2 cut(s) 162, 259
TspRI CASTG 1 cut(s) 779
VpaK11BI GGWCC 2 cut(s) 530, 933
XapI RAATTY 5 cut(s) 413, 434, 523, 608, 715
XceI RCATGY 2 cut(s) 732, 767
XhoI CTCGAG 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 67
XspI CTAG 1 cut(s) 794
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.