Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001977

Physical Location & Seq

Genomic Coordinates Forward (+)

25581445 .. 25582925

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G268200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCTCATTATCCTTTTCCAGACACTTAGCTGCCTTTGTTTTGCTCATTTTCTTCCTGCAACCCTCAGCTGCAGACTCAAACTCCTCGTTTTCATTCACTGAATTTGGTAAAGGTCCAAAATTTGAGTCCAATATTGCTCTTTATGGTGATGCAGAGGTTGTTAATGGTGGGTATGCAGTTCAACTCACTAGTTCAGTGAGATCAAGTGCTGGGAGAACCATGTACAAGAAACCCATCAAGCTCACTGAAGGTAAACCTCAGAAATCAGTATCTTTCTCCACAAACTTCTCATTTTCTGTGTCCACTGGCAATGGGGATGGTTTGGCCTTTGTTATGGTTCCAAGTGGTTTCAATCTTAGCATGTTTGCTAATAGCTCTTTTGGGCTTTCTCTAGGACATGGGAAAGGTAAATTTAAAGTTGTTGCAGTTAAGTTTAATGCATTAAGGGATGCCAAGGTTCATGTTGGAATTGATGTGGGTAGTTCTGTATCAGCTAAAGTAAGCACTTCTTCAAGTAAGAATTTGAATCTAACTAGTGGGAATAAAACGCATGCTTGGATCGATTATGAAGCTGGTTCGAATAGATTAGAAGTTAGGCTGAGTCAATTTGCTCATCCAAGGCCAGCTGATCCTCTGCTATGGTACCCAATTGACTTGTCAGAACTGTGGGAGCATGAGAAAGTGTTTGTGGGCTTAAGTGCAATGAACAGGAATTCGTCTCAGACATGTTTGATAACTTCTTGGAGCTTTGAGCAAAGGCATGTGCCGCACTGGATGCATTCACAGCCACTAGATCCCGAGGTCTTTGCTAAGAATTCGAAACCGGTGAGAGTTGAAACCAAAAAGGATTGTGTAAAAAGGGTTTTTGGTGCAATGGTTTTTGGTGTTGCTTGTGGAGCATTGGCATCACTCCTTGCGTTGTATTTGTGGACCGTCTTCGGTAATCGGCGTCCGGTGGTGCCAGAGGGCTATGCTGAGCAGCCTAAAGAATTTGAGTATGATAAAGTGAAAGTAGGTGTAGATGATAAAGCCATCGAAGATGGAAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

352

Amino Acids

38.43

Weight (kDa)

9.24

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09035 AT3G09190 AT5G01090
fragaria_vesca	FvH4_6g12300 FvH4_7g23770
malus_domestica	MD01G1145100.v1.1 MD07G1165700.v1.1 MD07G1211800.v1.1 MD12G1085400.v1.1
prunus_persica	Prupe.2G244400_v2.0.a1 Prupe.6G268200_v2.0.a1
pyrus_communis	pycom01g16450 pycom04g13040 pycom04g13050 pycom07g19500 pycom12g08030 pycom12g15000
rosa_chinensis	RchiOBHm_Chr1g0369101 RchiOBHm_Chr3g0464131
rosa_laevigata	RLG00000024720 RLG00000027158
rosa_multiflora	Rmu_sc0001552.1_g000037 Rmu_sc0003337.1_g000012 Rmu_sc0004250.1_g000019 Rmu_sc0010401.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288000 Rroxscaffold_6G00415970
rosa_rugosa	Rorug01G0348100 Rorug03G0070700
rosa_samantha	Rh1AG354900 Rh1BG318200 Rh1BG335600 Rh1CG332600 Rh1DG348900 Rh2BG629000 Rh2CG320200 Rh2DG640800 Rh3BG132100 Rh3CG134300 Rh3DG133300 Rh4DG353800 Rh6BG239800 Rh7DG015800
rosa_wichuraiana	Rw1G031320 Rw3G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	645
AccB1I	GGYRCC	2 cut(s)	645, 961
AciI	CCGC	1 cut(s)	770
AclWI	GGATC	3 cut(s)	569, 626, 791
AcsI	RAATTY	7 cut(s)	104, 122, 413, 523, 715, 817, 992
AcuI	CTGAAG	1 cut(s)	270
AcyI	GRCGYC	1 cut(s)	952
AfaI	GTAC	2 cut(s)	227, 647
AflII	CTTAAG	1 cut(s)	697
AflIII	ACRYGT	1 cut(s)	728
AgeI	ACCGGT	1 cut(s)	826
AgsI	TTSAA	5 cut(s)	185, 355, 516, 529, 839
AhlI	ACTAGT	2 cut(s)	191, 536
AluBI	AGCT	8 cut(s)	32, 71, 244, 378, 497, 575, 629, 750
AluI	AGCT	8 cut(s)	32, 71, 244, 378, 497, 575, 629, 750
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	3 cut(s)	569, 626, 791
Ama87I	CYCGRG	1 cut(s)	800
AoxI	GGCC	3 cut(s)	3, 327, 623
ApeKI	GCWGC	3 cut(s)	32, 71, 982
ApoI	RAATTY	7 cut(s)	104, 122, 413, 523, 715, 817, 992
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AsiGI	ACCGGT	1 cut(s)	826
Asp718I	GGTACC	1 cut(s)	645
AspS9I	GGNCC	2 cut(s)	116, 933
AsuHPI	GGTGA	2 cut(s)	161, 841
AsuII	TTCGAA	2 cut(s)	581, 821
AvaI	CYCGRG	1 cut(s)	800
AvaII	GGWCC	2 cut(s)	116, 933
BanI	GGYRCC	2 cut(s)	645, 961
BbsI	GAAGAC	1 cut(s)	931
BbvCI	CCTCAGC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	19, 58, 994
BccI	CCATC	4 cut(s)	245, 314, 1037, 1043
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BcoDI	GTCTC	1 cut(s)	726
BcuI	ACTAGT	2 cut(s)	191, 536
BfaI	CTAG	4 cut(s)	192, 395, 537, 794
BfmI	CTRYAG	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	697
BisI	GCNGC	4 cut(s)	33, 72, 770, 983
BlpI	GCTNAGC	1 cut(s)	978
BlsI	GCNGC	4 cut(s)	34, 73, 771, 984
Bme18I	GGWCC	2 cut(s)	116, 933
BmeT110I	CYCGRG	1 cut(s)	800
BmgT120I	GGNCC	2 cut(s)	116, 933
BmiI	GGNNCC	3 cut(s)	342, 647, 963
BmsI	GCATC	4 cut(s)	142, 442, 768, 917
BpiI	GAAGAC	1 cut(s)	931
Bpu10I	CCTNAGC	1 cut(s)	67
Bpu1102I	GCTNAGC	1 cut(s)	978
Bpu14I	TTCGAA	2 cut(s)	581, 821
Bsa29I	ATCGAT	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	952
BsaJI	CCNNGG	3 cut(s)	456, 620, 801
BsaWI	WCCGGW	2 cut(s)	826, 955
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bse118I	RCCGGY	1 cut(s)	826
Bse1I	ACTGG	2 cut(s)	313, 779
Bse3DI	GCAATG	3 cut(s)	319, 711, 882
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	456, 620, 801
BseGI	GGATG	4 cut(s)	325, 457, 616, 783
BseMI	GCAATG	3 cut(s)	319, 711, 882
BseMII	CTCAG	5 cut(s)	81, 275, 593, 737, 969
BseNI	ACTGG	2 cut(s)	313, 779
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	3 cut(s)	19, 58, 994
BseYI	CCCAGC	1 cut(s)	212
BshFI	GGCC	3 cut(s)	5, 329, 625
BshNI	GGYRCC	2 cut(s)	645, 961
BshTI	ACCGGT	1 cut(s)	826
BshVI	ATCGAT	1 cut(s)	564
BsiHKCI	CYCGRG	1 cut(s)	800
BsiSI	CCGG	2 cut(s)	827, 956
BsmAI	GTCTC	1 cut(s)	726
BsmBI	CGTCTC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	3 cut(s)	5, 329, 625
BsoBI	CYCGRG	1 cut(s)	800
Bsp119I	TTCGAA	2 cut(s)	581, 821
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	203, 561, 631, 796
Bsp1720I	GCTNAGC	1 cut(s)	978
BspACI	CCGC	1 cut(s)	770
BspANI	GGCC	3 cut(s)	5, 329, 625
BspCNI	CTCAG	5 cut(s)	80, 274, 594, 736, 970
BspDI	ATCGAT	1 cut(s)	564
BspLI	GGNNCC	3 cut(s)	342, 647, 963
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	3 cut(s)	569, 626, 791
BspT104I	TTCGAA	2 cut(s)	581, 821
BspT107I	GGYRCC	2 cut(s)	645, 961
BspTI	CTTAAG	1 cut(s)	697
BsrDI	GCAATG	3 cut(s)	319, 711, 882
BsrFI	RCCGGY	1 cut(s)	826
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	313, 779
BssAI	RCCGGY	1 cut(s)	826
BssECI	CCNNGG	3 cut(s)	456, 620, 801
BssMI	GATC	4 cut(s)	203, 561, 631, 796
BssNI	GRCGYC	1 cut(s)	952
BssT1I	CCWWGG	2 cut(s)	456, 620
Bst4CI	ACNGT	2 cut(s)	669, 937
BstACI	GRCGYC	1 cut(s)	952
BstAFI	CTTAAG	1 cut(s)	697
BstAPI	GCANNNNNTGC	1 cut(s)	778
BstAUI	TGTACA	1 cut(s)	225
BstBI	TTCGAA	2 cut(s)	581, 821
BstC8I	GCNNGC	2 cut(s)	555, 627
BstDEI	CTNAG	8 cut(s)	28, 67, 261, 359, 602, 723, 813, 978
BstF5I	GGATG	4 cut(s)	325, 457, 616, 783
BstKTI	GATC	4 cut(s)	206, 564, 634, 799
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	4 cut(s)	203, 561, 631, 796
BstMWI	GCNNNNNNNGC	4 cut(s)	769, 778, 787, 899
BstNSI	RCATGY	4 cut(s)	367, 557, 732, 767
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	19, 58, 994
BstV2I	GAAGAC	1 cut(s)	931
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
Bsu15I	ATCGAT	1 cut(s)	564
BsuRI	GGCC	3 cut(s)	5, 329, 625
BsuTUI	ATCGAT	1 cut(s)	564
BtsCI	GGATG	4 cut(s)	325, 457, 616, 783
BtsIMutI	CAGTG	5 cut(s)	99, 204, 246, 306, 772
Cac8I	GCNNGC	2 cut(s)	555, 627
Cfr10I	RCCGGY	1 cut(s)	826
Cfr13I	GGNCC	2 cut(s)	116, 933
ClaI	ATCGAT	1 cut(s)	564
CseI	GACGC	1 cut(s)	941
Csp6I	GTAC	2 cut(s)	226, 646
CspAI	ACCGGT	1 cut(s)	826
CviAII	CATG	8 cut(s)	223, 364, 401, 464, 554, 677, 729, 764
CviQI	GTAC	2 cut(s)	226, 646
DdeI	CTNAG	8 cut(s)	28, 67, 261, 359, 602, 723, 813, 978
DpnI	GATC	4 cut(s)	205, 563, 633, 798
DpnII	GATC	4 cut(s)	203, 561, 631, 796
DraI	TTTAAA	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	456, 620
Eco47I	GGWCC	2 cut(s)	116, 933
Eco57I	CTGAAG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	800
EcoRI	GAATTC	2 cut(s)	715, 817
EcoT14I	CCWWGG	2 cut(s)	456, 620
EcoT22I	ATGCAT	2 cut(s)	445, 783
ErhI	CCWWGG	2 cut(s)	456, 620
Esp3I	CGTCTC	1 cut(s)	726
FaeI	CATG	8 cut(s)	226, 367, 404, 467, 557, 680, 732, 767
FalI	AAGNNNNNCTT	2 cut(s)	496, 528
FatI	CATG	8 cut(s)	222, 363, 400, 463, 553, 676, 728, 763
Fnu4HI	GCNGC	4 cut(s)	33, 72, 770, 983
FokI	GGATG	4 cut(s)	332, 464, 603, 790
Fsp4HI	GCNGC	4 cut(s)	33, 72, 770, 983
FspBI	CTAG	4 cut(s)	192, 395, 537, 794
GluI	GCNGC	4 cut(s)	33, 72, 770, 983
GsaI	CCCAGC	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	5, 329, 625
HapII	CCGG	2 cut(s)	827, 956
HgaI	GACGC	1 cut(s)	941
Hin1I	GRCGYC	1 cut(s)	952
Hin1II	CATG	8 cut(s)	226, 367, 404, 467, 557, 680, 732, 767
HinfI	GANTC	4 cut(s)	77, 128, 529, 604
HpaII	CCGG	2 cut(s)	827, 956
HphI	GGTGA	2 cut(s)	161, 841
Hpy166II	GTNNAC	3 cut(s)	257, 306, 933
Hpy188I	TCNGA	3 cut(s)	264, 664, 726
Hpy188III	TCNNGA	2 cut(s)	21, 800
Hpy8I	GTNNAC	3 cut(s)	257, 306, 933
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	669, 937
HpyCH4V	TGCA	9 cut(s)	61, 74, 155, 179, 428, 443, 704, 781, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	769, 778, 787, 899
HpyF3I	CTNAG	8 cut(s)	28, 67, 261, 359, 602, 723, 813, 978
Hsp92I	GRCGYC	1 cut(s)	952
Hsp92II	CATG	8 cut(s)	226, 367, 404, 467, 557, 680, 732, 767
KpnI	GGTACC	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	203, 561, 631, 796
LmnI	GCTCC	3 cut(s)	673, 747, 899
Lsp1109I	GCAGC	3 cut(s)	19, 58, 994
LweI	GCATC	4 cut(s)	142, 442, 768, 917
MaeI	CTAG	4 cut(s)	192, 395, 537, 794
MalI	GATC	4 cut(s)	205, 563, 633, 798
MboI	GATC	4 cut(s)	203, 561, 631, 796
MboII	GAAGA	4 cut(s)	46, 504, 931, 1052
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	796
MlyI	GAGTC	3 cut(s)	71, 137, 613
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	8 cut(s)	16, 76, 97, 151, 270, 645, 796, 961
Mph1103I	ATGCAT	2 cut(s)	445, 783
MseI	TTAA	6 cut(s)	165, 417, 432, 438, 446, 698
MspA1I	CMGCKG	2 cut(s)	71, 629
MspCI	CTTAAG	1 cut(s)	697
MspI	CCGG	2 cut(s)	827, 956
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	781
MwoI	GCNNNNNNNGC	4 cut(s)	769, 778, 787, 899
NdeII	GATC	4 cut(s)	203, 561, 631, 796
NlaIII	CATG	8 cut(s)	226, 367, 404, 467, 557, 680, 732, 767
NlaIV	GGNNCC	3 cut(s)	342, 647, 963
NsiI	ATGCAT	2 cut(s)	445, 783
NspI	RCATGY	4 cut(s)	367, 557, 732, 767
NspV	TTCGAA	2 cut(s)	581, 821
PaeI	GCATGC	1 cut(s)	557
PciI	ACATGT	1 cut(s)	728
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	1 cut(s)	529
PinAI	ACCGGT	1 cut(s)	826
PkrI	GCNGC	4 cut(s)	34, 73, 771, 984
PleI	GAGTC	3 cut(s)	71, 136, 612
PpsI	GAGTC	3 cut(s)	71, 136, 612
PscI	ACATGT	1 cut(s)	728
PspFI	CCCAGC	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	342, 647, 963
PspPI	GGNCC	2 cut(s)	116, 933
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	796
PvuII	CAGCTG	2 cut(s)	71, 629
RsaI	GTAC	2 cut(s)	227, 647
RsaNI	GTAC	2 cut(s)	226, 646
SaqAI	TTAA	6 cut(s)	165, 417, 432, 438, 446, 698
SatI	GCNGC	4 cut(s)	33, 72, 770, 983
Sau3AI	GATC	4 cut(s)	203, 561, 631, 796
Sau96I	GGNCC	2 cut(s)	116, 933
SchI	GAGTC	3 cut(s)	71, 137, 613
SfaNI	GCATC	4 cut(s)	142, 442, 768, 917
SfcI	CTRYAG	1 cut(s)	72
SfuI	TTCGAA	2 cut(s)	581, 821
SinI	GGWCC	2 cut(s)	116, 933
SmlI	CTYRAG	1 cut(s)	697
SmoI	CTYRAG	1 cut(s)	697
SpeI	ACTAGT	2 cut(s)	191, 536
SphI	GCATGC	1 cut(s)	557
SsiI	CCGC	1 cut(s)	770
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	4 cut(s)	192, 395, 537, 794
StyI	CCWWGG	2 cut(s)	456, 620
TaaI	ACNGT	2 cut(s)	669, 937
TaqI	TCGA	4 cut(s)	564, 581, 821, 1038
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	772
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	6 cut(s)	165, 417, 432, 438, 446, 698
Tru9I	TTAA	6 cut(s)	165, 417, 432, 438, 446, 698
TscAI	CASTG	5 cut(s)	106, 204, 253, 313, 779
TseI	GCWGC	3 cut(s)	32, 71, 982
TspDTI	ATGAA	4 cut(s)	84, 452, 585, 722
TspRI	CASTG	5 cut(s)	106, 204, 253, 313, 779
Vha464I	CTTAAG	1 cut(s)	697
VpaK11BI	GGWCC	2 cut(s)	116, 933
XapI	RAATTY	7 cut(s)	104, 122, 413, 523, 715, 817, 992
XceI	RCATGY	4 cut(s)	367, 557, 732, 767
XspI	CTAG	4 cut(s)	192, 395, 537, 794
Zsp2I	ATGCAT	2 cut(s)	445, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.