Rh7DG015800

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001977
Physical Location & Seq
Reverse (-)
1280467 .. 1281781
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG015800.1

Sequence Viewer

Length: 660 bp
ATGAATGAAAATGTGAATGATGTGAATGCAAATCATATAGGGGTGAATGTGGGTAGCTTTGTATCTTTGACTGTTGGGAATGTTACTGCATTGAATTTGGTGCTTAATAGTGGAGAAAAGATGAAATCTTGGATTGATTATGATGCTAGTTCGAAAAGATTAGAGATAAGGTTGAGTAAGTTGGGTGAACCAAGGCCTTATAGTCCGATTGTTGCGCATGGCATAGATTTATTGGAAATGTGGAAAGATAAGGATGTGTATGTAGGGATAAGCTCGTCGAATTCAAATGGCAGTTCCTCGCAGATTTGTAGTGTGTATTCTTGGAGTTTTAGGATGAGAAAGGTTCCGAGGATGCATTCGCTTCCGGTGAATCCGAGGGGTTATTTGGATGATCAGCATGGTGAAAATCCGGGTCTGCATAAGAGGATGGCTTGTCCATTGTCAATTCTTGCTGGGATTATATTCATGACTGGGTGTGGAGCTCTGGTTTCATTTGTCATGCTGTTTTTGTGGGCTATAATTGTTAACAGGCACACGGTTTTCCCTGCTGAAGTGCTCCCAGATGAGTTTCCGGTGAAGCCTAATCCTACGGATTTCAGGTATGAGAAGATCAGTGTAGTTGTAGAGGAAGATGCAGATGCAGATGGTGTTAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

219

Amino Acids

24.29

Weight (kDa)

6.3

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 2 - 117 8.3e-26 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 216
AcsI RAATTY 2 cut(s) 94, 280
AcuI CTGAAG 1 cut(s) 570
AgsI TTSAA 2 cut(s) 94, 285
AluBI AGCT 3 cut(s) 57, 273, 482
AluI AGCT 3 cut(s) 57, 273, 482
Alw21I GWGCWC 2 cut(s) 484, 558
AoxI GGCC 1 cut(s) 194
ApoI RAATTY 2 cut(s) 94, 280
AspLEI GCGC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 5 cut(s) 55, 197, 379, 413, 586
AsuII TTCGAA 1 cut(s) 152
BanII GRGCYC 1 cut(s) 484
Bbv12I GWGCWC 2 cut(s) 484, 558
BccI CCATC 2 cut(s) 421, 638
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 1 cut(s) 411
BfaI CTAG 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 411
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 411
BmrI ACTGGG 1 cut(s) 480
BmsI GCATC 4 cut(s) 133, 342, 622, 628
BmuI ACTGGG 1 cut(s) 480
Bpu14I TTCGAA 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 411
BsaJI CCNNGG 3 cut(s) 191, 347, 374
BsaWI WCCGGW 2 cut(s) 364, 571
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bse1I ACTGG 1 cut(s) 475
BseDI CCNNGG 3 cut(s) 191, 347, 374
BseGI GGATG 5 cut(s) 259, 339, 357, 394, 432
BseNI ACTGG 1 cut(s) 475
BseYI CCCAGC 1 cut(s) 452
BshFI GGCC 1 cut(s) 196
BsiHKAI GWGCWC 2 cut(s) 484, 558
BsiSI CCGG 3 cut(s) 365, 410, 572
BsmI GAATGC 2 cut(s) 31, 355
BsnI GGCC 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 484, 558
Bsp143I GATC 2 cut(s) 391, 609
BspANI GGCC 1 cut(s) 196
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 152
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 3 cut(s) 191, 347, 374
BssMI GATC 2 cut(s) 391, 609
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 73, 538
BstBI TTCGAA 1 cut(s) 152
BstF5I GGATG 5 cut(s) 259, 339, 357, 394, 432
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 394, 612
BstMBI GATC 2 cut(s) 391, 609
BstSCI CCNGG 1 cut(s) 409
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 5 cut(s) 259, 339, 357, 394, 432
BtsIMutI CAGTG 1 cut(s) 619
CciI TCATGA 1 cut(s) 465
CfoI GCGC 1 cut(s) 217
CviAII CATG 4 cut(s) 218, 398, 466, 499
CviJI RGCY 7 cut(s) 57, 196, 273, 431, 482, 515, 580
CviKI_1 RGCY 7 cut(s) 57, 196, 273, 431, 482, 515, 580
DpnI GATC 2 cut(s) 393, 611
DpnII GATC 2 cut(s) 391, 609
Ecl136II GAGCTC 1 cut(s) 482
Eco130I CCWWGG 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 482
Eco57I CTGAAG 1 cut(s) 570
EcoICRI GAGCTC 1 cut(s) 482
EcoRI GAATTC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 4 cut(s) 221, 401, 469, 502
FatI CATG 4 cut(s) 217, 397, 465, 498
FbaI TGATCA 1 cut(s) 391
FokI GGATG 5 cut(s) 266, 346, 364, 401, 439
FriOI GRGCYC 1 cut(s) 484
FspBI CTAG 1 cut(s) 147
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 456
HaeIII GGCC 1 cut(s) 196
HapII CCGG 3 cut(s) 365, 410, 572
HhaI GCGC 1 cut(s) 217
Hin1II CATG 4 cut(s) 221, 401, 469, 502
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 1 cut(s) 370
HpaI GTTAAC 1 cut(s) 526
HpaII CCGG 3 cut(s) 365, 410, 572
HphI GGTGA 5 cut(s) 55, 197, 379, 413, 586
Hpy166II GTNNAC 2 cut(s) 188, 526
Hpy188I TCNGA 3 cut(s) 207, 348, 375
Hpy188III TCNNGA 1 cut(s) 466
Hpy8I GTNNAC 2 cut(s) 188, 526
Hpy99I CGWCG 1 cut(s) 280
HpyCH4III ACNGT 2 cut(s) 73, 538
HpyCH4V TGCA 6 cut(s) 29, 89, 355, 418, 635, 641
Hsp92II CATG 4 cut(s) 221, 401, 469, 502
HspAI GCGC 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 526
Kzo9I GATC 2 cut(s) 391, 609
LmnI GCTCC 2 cut(s) 479, 561
LweI GCATC 4 cut(s) 133, 342, 622, 628
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 393, 611
MboI GATC 2 cut(s) 391, 609
MboII GAAGA 2 cut(s) 619, 641
MhlI GDGCHC 2 cut(s) 484, 558
MluCI AATT 4 cut(s) 94, 280, 444, 519
MnlI CCTC 5 cut(s) 307, 342, 369, 417, 619
Mph1103I ATGCAT 1 cut(s) 357
MseI TTAA 3 cut(s) 105, 525, 651
MspI CCGG 3 cut(s) 365, 410, 572
MspR9I CCNGG 1 cut(s) 411
Mva1269I GAATGC 2 cut(s) 31, 355
NciI CCSGG 1 cut(s) 411
NdeII GATC 2 cut(s) 391, 609
NlaIII CATG 4 cut(s) 221, 401, 469, 502
NlaIV GGNNCC 1 cut(s) 345
NsbI TGCGCA 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 357
NspV TTCGAA 1 cut(s) 152
PagI TCATGA 1 cut(s) 465
PceI AGGCCT 1 cut(s) 196
PctI GAATGC 2 cut(s) 31, 355
PfeI GAWTC 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 484
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 345
SacI GAGCTC 1 cut(s) 484
SaqAI TTAA 3 cut(s) 105, 525, 651
Sau3AI GATC 2 cut(s) 391, 609
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 2 cut(s) 484, 558
SetI ASST 6 cut(s) 59, 173, 275, 345, 484, 602
SfaNI GCATC 4 cut(s) 133, 342, 622, 628
SfuI TTCGAA 1 cut(s) 152
Sse9I AATT 4 cut(s) 94, 280, 444, 519
SseBI AGGCCT 1 cut(s) 196
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 1 cut(s) 484
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 73, 538
TaqI TCGA 2 cut(s) 152, 278
TasI AATT 4 cut(s) 94, 280, 444, 519
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 3 cut(s) 105, 525, 651
Tru9I TTAA 3 cut(s) 105, 525, 651
TscAI CASTG 1 cut(s) 619
TspDTI ATGAA 5 cut(s) 17, 21, 137, 454, 480
TspGWI ACGGA 1 cut(s) 605
TspRI CASTG 1 cut(s) 619
XapI RAATTY 2 cut(s) 94, 280
XspI CTAG 1 cut(s) 147
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.