Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001977

Physical Location & Seq

Genomic Coordinates Forward (+)

16030804 .. 16031886

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCGAACTTCACCATTTCCCGCTGCAATTTCCCCTTCATTTTCCTCCTCTCCTCCTTCTATTTCCTAACCCTAACCCTAATTGCAGAACCCACTTCTTCTTCCGGGCCCGAACCTCTAAACAACAGCAGCAATCCCAACTTCGATTCCGAAATTGCCCTCCTCGGTGACGCCGCGCTAGCAGGCGGTGGATCCTATGTCAACCTTACGCGGCCGTCGGTCTCAAGCTCCGGTCTTCTCCTCCGCAGAAAACCCTTTAAATTTCTTGATGGGAATCTCAGCAACCCGACGTCGTTTTCAACCGAGTTCGCATTCTCGATGACGCCCGACGGCGGCGACGGGCTTTTGCTCGTCTTTGCTCCCGGAGATTTGGGGTCCAGATTATCGGGTAAGGGCCCGTTTGGGATTAAAGGTGACGATCGATTTCTGGGTGTTGAATTTGATACTGACATGAATGGAGATATGAATGATTTGAATGCTAATCACATAGGGGTAGATGTTGGTAGCTTTGTATCTGTAGCTGTTGGTAATGTTTCTAAATTGAATTTGGTGCTTAATAGTGGAGAAAAGTTGAAATGTTGGATCGATTACGATGCTAGTTCGAAACGATTGGAGATTAGGCTAGGCAAAATGGACGAATCGAGGCCTTATGCTCCGATTACGGCATATGGGATAGATATGTCGGGAATGTGGAGAGGTGAGGATGTGTATGTAGGTATTAGCTCCTCGAATTCGCATGGAAATTCGTCACAGATTAGCAGTGTGTATTCATGGAATTTTAGGCTTAGAAATGTTCCCAAGTCGATGCATTCTCTGCCGGTGAATCCGAGGGGGTATTTGGATGGACATGGTGAGAGTTTGAGCGTGCAGAAGCGGGGGGTTTGCCCATTGACAGTTCTTGCCGGGATGATCTTCGTGACTGGGTGTGGGGCATTGGTGGCATTTGTGATGCTGTTTTTGTGGGCTATTATCATCAGTAGGCACACGGAGTTCCCTGCTGAGTTTTCTCCAAAGCCTGCGGAGTTTAGGTACGAGAAGATCGATGTAGTTGTAGAGAAAGATGTCGATGGTATTAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

361

Amino Acids

39.09

Weight (kDa)

5.46

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_L-type_dom	PF18483	46 - 245	2.5e-08	Legume lectin beta-barrel domain
Lectin_legB	PF00139	47 - 270	9.9e-43	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09035 AT3G09190 AT5G01090
fragaria_vesca	FvH4_6g12300 FvH4_7g23770
malus_domestica	MD01G1145100.v1.1 MD07G1165700.v1.1 MD07G1211800.v1.1 MD12G1085400.v1.1
prunus_persica	Prupe.2G244400_v2.0.a1 Prupe.6G268200_v2.0.a1
pyrus_communis	pycom01g16450 pycom04g13040 pycom04g13050 pycom07g19500 pycom12g08030 pycom12g15000
rosa_chinensis	RchiOBHm_Chr1g0369101 RchiOBHm_Chr3g0464131
rosa_laevigata	RLG00000024720 RLG00000027158
rosa_multiflora	Rmu_sc0001552.1_g000037 Rmu_sc0003337.1_g000012 Rmu_sc0004250.1_g000019 Rmu_sc0010401.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288000 Rroxscaffold_6G00415970
rosa_rugosa	Rorug01G0348100 Rorug03G0070700
rosa_samantha	Rh1AG354900 Rh1BG318200 Rh1BG335600 Rh1CG332600 Rh1DG348900 Rh2BG629000 Rh2CG320200 Rh2DG640800 Rh3BG132100 Rh3CG134300 Rh3DG133300 Rh4DG353800 Rh6BG239800 Rh7DG015800
rosa_wichuraiana	Rw1G031320 Rw3G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	293
AccII	CGCG	2 cut(s)	176, 211
AciI	CCGC	8 cut(s)	22, 174, 186, 211, 244, 333, 874, 1019
AclWI	GGATC	3 cut(s)	186, 199, 590
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	6 cut(s)	260, 437, 544, 730, 742, 775
AcyI	GRCGYC	3 cut(s)	171, 290, 323
AfaI	GTAC	2 cut(s)	1031, 1079
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	5 cut(s)	300, 437, 475, 544, 574
AluBI	AGCT	4 cut(s)	228, 507, 521, 723
AluI	AGCT	4 cut(s)	228, 507, 521, 723
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	3 cut(s)	186, 199, 590
AoxI	GGCC	4 cut(s)	107, 212, 394, 644
ApaI	GGGCCC	2 cut(s)	111, 398
ApeKI	GCWGC	2 cut(s)	24, 129
ApoI	RAATTY	6 cut(s)	260, 437, 544, 730, 742, 775
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	5 cut(s)	107, 108, 375, 394, 395
AsuC2I	CCSGG	3 cut(s)	106, 363, 904
AsuHPI	GGTGA	6 cut(s)	4, 179, 425, 710, 832, 863
AsuII	TTCGAA	1 cut(s)	602
AsuNHI	GCTAGC	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	375
BaeGI	GKGCMC	2 cut(s)	111, 398
BamHI	GGATCC	1 cut(s)	191
BanII	GRGCYC	2 cut(s)	111, 398
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	11, 141
BccI	CCATC	3 cut(s)	263, 836, 1061
BceAI	ACGGC	3 cut(s)	199, 346, 678
BcgI	CGANNNNNNTGC	2 cut(s)	575, 609
BcnI	CCSGG	3 cut(s)	106, 363, 904
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	4 cut(s)	179, 597, 623, 1081
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	5 cut(s)	25, 130, 174, 212, 334
BlsI	GCNGC	5 cut(s)	26, 131, 175, 213, 335
BmcAI	AGTACT	1 cut(s)	1079
Bme1390I	CCNGG	3 cut(s)	106, 363, 904
Bme18I	GGWCC	1 cut(s)	375
BmgT120I	GGNCC	5 cut(s)	107, 108, 375, 394, 395
BmiI	GGNNCC	4 cut(s)	109, 193, 376, 396
BmrFI	CCNGG	3 cut(s)	106, 363, 904
BmrI	ACTGGG	1 cut(s)	930
BmsI	GCATC	3 cut(s)	583, 795, 939
BmtI	GCTAGC	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	930
BpiI	GAAGAC	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	3 cut(s)	106, 363, 904
Bsa29I	ATCGAT	3 cut(s)	421, 585, 1041
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	3 cut(s)	171, 290, 323
BsaI	GGTCTC	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	163, 827
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	1013, 1043
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	817
Bse1I	ACTGG	1 cut(s)	925
Bse8I	GATNNNNATC	1 cut(s)	273
BseCI	ATCGAT	3 cut(s)	421, 585, 1041
BseDI	CCNNGG	2 cut(s)	163, 827
BseGI	GGATG	3 cut(s)	709, 847, 912
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	2 cut(s)	292, 990
BseNI	ACTGG	1 cut(s)	925
BseRI	GAGGAG	5 cut(s)	38, 43, 152, 230, 715
BseSI	GKGCMC	2 cut(s)	111, 398
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	11, 141
BsgI	GTGCAG	1 cut(s)	887
Bsh1236I	CGCG	2 cut(s)	176, 211
Bsh1285I	CGRYCG	2 cut(s)	215, 421
BshFI	GGCC	4 cut(s)	109, 214, 396, 646
BshVI	ATCGAT	3 cut(s)	421, 585, 1041
BsiEI	CGRYCG	2 cut(s)	215, 421
BsiSI	CCGG	5 cut(s)	105, 231, 363, 818, 903
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	226
BsmI	GAATGC	3 cut(s)	311, 481, 808
BsnI	GGCC	4 cut(s)	109, 214, 396, 646
Bso31I	GGTCTC	1 cut(s)	226
Bsp119I	TTCGAA	1 cut(s)	602
Bsp120I	GGGCCC	2 cut(s)	107, 394
Bsp1286I	GDGCHC	2 cut(s)	111, 398
Bsp143I	GATC	5 cut(s)	191, 418, 582, 909, 1038
BspACI	CCGC	8 cut(s)	22, 174, 186, 211, 244, 333, 874, 1019
BspANI	GGCC	4 cut(s)	109, 214, 396, 646
BspCNI	CTCAG	2 cut(s)	291, 991
BspDI	ATCGAT	3 cut(s)	421, 585, 1041
BspFNI	CGCG	2 cut(s)	176, 211
BspLI	GGNNCC	4 cut(s)	109, 193, 376, 396
BspOI	GCTAGC	1 cut(s)	182
BspPI	GGATC	3 cut(s)	186, 199, 590
BspT104I	TTCGAA	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	817
BsrI	ACTGG	1 cut(s)	925
BssAI	RCCGGY	1 cut(s)	817
BssECI	CCNNGG	2 cut(s)	163, 827
BssMI	GATC	5 cut(s)	191, 418, 582, 909, 1038
BssNI	GRCGYC	3 cut(s)	171, 290, 323
Bst4CI	ACNGT	1 cut(s)	895
BstACI	GRCGYC	3 cut(s)	171, 290, 323
BstAPI	GCANNNNNTGC	1 cut(s)	814
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	4 cut(s)	180, 184, 866, 1017
BstDEI	CTNAG	3 cut(s)	278, 785, 999
BstF5I	GGATG	3 cut(s)	709, 847, 912
BstFNI	CGCG	2 cut(s)	176, 211
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	5 cut(s)	194, 421, 585, 912, 1041
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	5 cut(s)	191, 418, 582, 909, 1038
BstMCI	CGRYCG	2 cut(s)	215, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 814, 938
BstSCI	CCNGG	3 cut(s)	104, 361, 902
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	2 cut(s)	111, 398
BstUI	CGCG	2 cut(s)	176, 211
BstV1I	GCAGC	2 cut(s)	11, 141
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BstZI	CGGCCG	1 cut(s)	212
Bsu15I	ATCGAT	3 cut(s)	421, 585, 1041
BsuRI	GGCC	4 cut(s)	109, 214, 396, 646
BsuTUI	ATCGAT	3 cut(s)	421, 585, 1041
BtsCI	GGATG	3 cut(s)	709, 847, 912
BtsI	GCAGTG	1 cut(s)	766
BtsIMutI	CAGTG	1 cut(s)	766
Cac8I	GCNNGC	4 cut(s)	180, 184, 866, 1017
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	817
Cfr13I	GGNCC	5 cut(s)	107, 108, 375, 394, 395
ClaI	ATCGAT	3 cut(s)	421, 585, 1041
CseI	GACGC	2 cut(s)	179, 331
Csp6I	GTAC	2 cut(s)	1030, 1078
CviAII	CATG	4 cut(s)	451, 737, 771, 848
CviQI	GTAC	2 cut(s)	1030, 1078
DdeI	CTNAG	3 cut(s)	278, 785, 999
DpnI	GATC	5 cut(s)	193, 420, 584, 911, 1040
DpnII	GATC	5 cut(s)	191, 418, 582, 909, 1038
DraI	TTTAAA	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	212
EagI	CGGCCG	1 cut(s)	212
EclXI	CGGCCG	1 cut(s)	212
Eco147I	AGGCCT	1 cut(s)	646
Eco24I	GRGCYC	2 cut(s)	111, 398
Eco31I	GGTCTC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	730
EcoT22I	ATGCAT	1 cut(s)	810
EcoT38I	GRGCYC	2 cut(s)	111, 398
FaeI	CATG	4 cut(s)	454, 740, 774, 851
FatI	CATG	4 cut(s)	450, 736, 770, 847
FauI	CCCGC	2 cut(s)	29, 867
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	5 cut(s)	25, 130, 174, 212, 334
FokI	GGATG	3 cut(s)	716, 854, 919
FriOI	GRGCYC	2 cut(s)	111, 398
Fsp4HI	GCNGC	5 cut(s)	25, 130, 174, 212, 334
FspBI	CTAG	4 cut(s)	179, 597, 623, 1081
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	5 cut(s)	25, 130, 174, 212, 334
HaeIII	GGCC	4 cut(s)	109, 214, 396, 646
HapII	CCGG	5 cut(s)	105, 231, 363, 818, 903
HgaI	GACGC	2 cut(s)	179, 331
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	3 cut(s)	171, 290, 323
Hin1II	CATG	4 cut(s)	454, 740, 774, 851
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	4 cut(s)	146, 274, 638, 823
HpaII	CCGG	5 cut(s)	105, 231, 363, 818, 903
HphI	GGTGA	6 cut(s)	4, 179, 425, 710, 832, 863
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	151, 657, 828
Hpy188III	TCNNGA	5 cut(s)	266, 316, 378, 684, 916
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	5 cut(s)	220, 292, 295, 332, 341
HpyAV	CCTTC	2 cut(s)	46, 67
HpyCH4III	ACNGT	1 cut(s)	895
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	4 cut(s)	27, 86, 808, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 814, 938
HpyF3I	CTNAG	3 cut(s)	278, 785, 999
HpySE526I	ACGT	1 cut(s)	290
Hsp92I	GRCGYC	3 cut(s)	171, 290, 323
Hsp92II	CATG	4 cut(s)	454, 740, 774, 851
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	5 cut(s)	191, 418, 582, 909, 1038
LmnI	GCTCC	4 cut(s)	233, 364, 658, 728
Lsp1109I	GCAGC	2 cut(s)	11, 141
LweI	GCATC	3 cut(s)	583, 795, 939
MaeI	CTAG	4 cut(s)	179, 597, 623, 1081
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	4 cut(s)	167, 413, 747, 916
MalI	GATC	5 cut(s)	193, 420, 584, 911, 1040
MboI	GATC	5 cut(s)	191, 418, 582, 909, 1038
MboII	GAAGA	5 cut(s)	90, 93, 227, 904, 1048
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	111, 398
MmeI	TCCRAC	1 cut(s)	560
Mph1103I	ATGCAT	1 cut(s)	810
MseI	TTAA	4 cut(s)	258, 408, 555, 1074
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	5 cut(s)	105, 231, 363, 818, 903
MspR9I	CCNGG	3 cut(s)	106, 363, 904
Mva1269I	GAATGC	3 cut(s)	311, 481, 808
MvnI	CGCG	2 cut(s)	176, 211
MwoI	GCNNNNNNNGC	3 cut(s)	179, 814, 938
NciI	CCSGG	3 cut(s)	106, 363, 904
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	5 cut(s)	191, 418, 582, 909, 1038
NheI	GCTAGC	1 cut(s)	178
NlaIII	CATG	4 cut(s)	454, 740, 774, 851
NlaIV	GGNNCC	4 cut(s)	109, 193, 376, 396
NmuCI	GTSAC	4 cut(s)	167, 413, 747, 916
NsiI	ATGCAT	1 cut(s)	810
NspV	TTCGAA	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	1038
PctI	GAATGC	3 cut(s)	311, 481, 808
PfeI	GAWTC	4 cut(s)	146, 274, 638, 823
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	5 cut(s)	26, 131, 175, 213, 335
Ple19I	CGATCG	1 cut(s)	421
PspN4I	GGNNCC	4 cut(s)	109, 193, 376, 396
PspOMI	GGGCCC	2 cut(s)	107, 394
PspPI	GGNCC	5 cut(s)	107, 108, 375, 394, 395
PsuI	RGATCY	1 cut(s)	191
PvuI	CGATCG	1 cut(s)	421
RsaI	GTAC	2 cut(s)	1031, 1079
RsaNI	GTAC	2 cut(s)	1030, 1078
SaqAI	TTAA	4 cut(s)	258, 408, 555, 1074
SatI	GCNGC	5 cut(s)	25, 130, 174, 212, 334
Sau3AI	GATC	5 cut(s)	191, 418, 582, 909, 1038
Sau96I	GGNCC	5 cut(s)	107, 108, 375, 394, 395
ScaI	AGTACT	1 cut(s)	1079
ScrFI	CCNGG	3 cut(s)	106, 363, 904
SduI	GDGCHC	2 cut(s)	111, 398
SfaNI	GCATC	3 cut(s)	583, 795, 939
SfcI	CTRYAG	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	602
SinI	GGWCC	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	646
SsiI	CCGC	8 cut(s)	22, 174, 186, 211, 244, 333, 874, 1019
SspMI	CTAG	4 cut(s)	179, 597, 623, 1081
StuI	AGGCCT	1 cut(s)	646
StyD4I	CCNGG	3 cut(s)	104, 361, 902
TaaI	ACNGT	1 cut(s)	895
TaiI	ACGT	1 cut(s)	293
TaqII	GACCGA	1 cut(s)	208
TatI	WGTACW	1 cut(s)	1077
TauI	GCSGC	3 cut(s)	176, 214, 336
TfiI	GAWTC	4 cut(s)	146, 274, 638, 823
Tru1I	TTAA	4 cut(s)	258, 408, 555, 1074
Tru9I	TTAA	4 cut(s)	258, 408, 555, 1074
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	4 cut(s)	167, 413, 747, 916
TseI	GCWGC	2 cut(s)	24, 129
Tsp45I	GTSAC	4 cut(s)	167, 413, 747, 916
TspDTI	ATGAA	4 cut(s)	28, 467, 479, 759
TspGWI	ACGGA	1 cut(s)	1001
TspRI	CASTG	1 cut(s)	766
VpaK11BI	GGWCC	1 cut(s)	375
XapI	RAATTY	6 cut(s)	260, 437, 544, 730, 742, 775
XspI	CTAG	4 cut(s)	179, 597, 623, 1081
ZraI	GACGTC	1 cut(s)	291
ZrmI	AGTACT	1 cut(s)	1079
Zsp2I	ATGCAT	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.