AT5G01090

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001977
Physical Location & Seq
Forward (+)
32780 .. 34376
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01090.1

Sequence Viewer

Length: 1062 bp
ATGGCGGTCTTCAAAACCCTAGCTTTCCTATTCGTTTTAAGCATCGTGATTTACCAATCAGTGGCTGTTACAGATGTAAATTCATCGTTTTCCTTTAATGGGTTTGTGAAAGCTCCAAGCTTTGACAATAATGTTGCTCTGTTTGGAGATTCGAAGCTCGTTCATGGCGGTCCATCGATACAATTGACTGACTCAGTGAGTCGCAGTGAAGGGCGAGTTATTTACAAGAAACCCATCAGACTGTTCCAAGGTAAAGAGAGAAACTTTTCCGGATCATTCTCAACTAGTTTCTCGTTTTCGATGTCTGATGAGATTGGTAGTGTCTTGGCTTTTATAATGGTTCCAAGAGGTTTGGATCTTAGGTTGTTTGGTAGAAAGGGTAATAATAGTTCCTCTGGTTTAGGGTTCTTATTGAAACACAAAGTTGTTGCTGTTGAGTTTGGTATCTCCAAGAGAGGGAATCATGTAGGGATCTTAGTTGGTCGTCCTGAATCTGGTAAAGTTAGAAAGTTATCATCTTTTGGTCACCATTTCAATGAAGAGAAGAGATTGAATTGTTGGATTGATTATGAGGCAAGCTCAAAGAGAATAGAGGTTCGTTTGAGTCTATCTGCTGCCTTAAAGCCGGTGGATCCATTCGTGTCTTACTCTGTAGACTTGGCTAAGCTATGGAAAGATGGGAAGTTTATGGTGGGTTTAACCTCTGCAAATGGAAACACTTCAAAGCCGGTTTATCTCCATTCGTGGAGCTTTAAACTGAGACATCCTTCGATGAGGATTCACTCGCAGCCGCTTGATCCAAACGACGTTTCCAAGACTGTTAAGGAAGGGGAGAAGACGGTGGAAGTTAAGGGGAAAGGAAAATGTATATGGAGAATCCTTGGTGCATTGGTTTTGGGGGCGGTTTGTGGAACATTGGGAGCCATGTTCGCGTTATACCTTTGGACAATATGCGGTAATAGGCAGTCAATGGCGATAGTTCCCGAGGAATGTGCTGACGAAAAAGCGGATATCCTTGTAACGAAAGCTGATGTTGTTGTTGAAGAAGAAGTCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

353

Amino Acids

38.85

Weight (kDa)

9.53

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 28 - 265 1.5e-48 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 61
AccI GTMKAC 1 cut(s) 654
AccII CGCG 1 cut(s) 932
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 6 cut(s) 5, 168, 791, 902, 954, 1007
AclWI GGATC 6 cut(s) 280, 363, 479, 626, 639, 791
AcsI RAATTY 1 cut(s) 79
AfiI CCNNNNNNNGG 4 cut(s) 61, 99, 456, 494
AgsI TTSAA 6 cut(s) 13, 415, 535, 553, 723, 1043
AhlI ACTAGT 1 cut(s) 284
AjuI GAANNNNNNNTTGG 2 cut(s) 793, 825
AluBI AGCT 8 cut(s) 23, 113, 120, 157, 579, 667, 750, 1028
AluI AGCT 8 cut(s) 23, 113, 120, 157, 579, 667, 750, 1028
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 6 cut(s) 280, 363, 479, 626, 639, 791
AlwNI CAGNNNCTG 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 983
Aor13HI TCCGGA 1 cut(s) 269
ApeKI GCWGC 2 cut(s) 614, 787
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 2 cut(s) 265, 718
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 518
AsuII TTCGAA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 983
AvaII GGWCC 1 cut(s) 170
BamHI GGATCC 1 cut(s) 631
BbsI GAAGAC 1 cut(s) 842
BbvI GCAGC 2 cut(s) 601, 799
BccI CCATC 3 cut(s) 181, 242, 671
BcgI CGANNNNNNTGC 2 cut(s) 974, 1008
BcoDI GTCTC 1 cut(s) 754
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 2 cut(s) 20, 285
BfmI CTRYAG 1 cut(s) 651
BisI GCNGC 3 cut(s) 615, 788, 791
BlpI GCTNAGC 1 cut(s) 663
BlsI GCNGC 3 cut(s) 616, 789, 792
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 983
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 3 cut(s) 342, 633, 922
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 842
BplI GAGNNNNNCTC 2 cut(s) 563, 595
Bpu1102I GCTNAGC 1 cut(s) 663
Bpu14I TTCGAA 1 cut(s) 152
Bsa29I ATCGAT 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 247, 880, 984
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 99, 456, 494
Bse118I RCCGGY 2 cut(s) 625, 727
BseAI TCCGGA 1 cut(s) 269
BseCI ATCGAT 1 cut(s) 176
BseDI CCNNGG 3 cut(s) 247, 880, 984
BseGI GGATG 1 cut(s) 763
BseLI CCNNNNNNNGG 4 cut(s) 61, 99, 456, 494
BseMII CTCAG 2 cut(s) 207, 749
BseXI GCAGC 2 cut(s) 601, 799
Bsh1236I CGCG 1 cut(s) 932
BshVI ATCGAT 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 983
BsiSI CCGG 3 cut(s) 270, 626, 728
BslI CCNNNNNNNGG 4 cut(s) 61, 99, 456, 494
BsmAI GTCTC 1 cut(s) 754
BsoBI CYCGRG 1 cut(s) 983
Bsp119I TTCGAA 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 5 cut(s) 272, 355, 471, 631, 796
Bsp1720I GCTNAGC 1 cut(s) 663
BspACI CCGC 6 cut(s) 5, 168, 791, 902, 954, 1007
BspCNI CTCAG 2 cut(s) 206, 750
BspDI ATCGAT 1 cut(s) 176
BspEI TCCGGA 1 cut(s) 269
BspFNI CGCG 1 cut(s) 932
BspLI GGNNCC 3 cut(s) 342, 633, 922
BspPI GGATC 6 cut(s) 280, 363, 479, 626, 639, 791
BspT104I TTCGAA 1 cut(s) 152
BsrFI RCCGGY 2 cut(s) 625, 727
BssAI RCCGGY 2 cut(s) 625, 727
BssECI CCNNGG 3 cut(s) 247, 880, 984
BssMI GATC 5 cut(s) 272, 355, 471, 631, 796
BssT1I CCWWGG 2 cut(s) 247, 880
Bst4CI ACNGT 3 cut(s) 243, 820, 841
Bst6I CTCTTC 2 cut(s) 534, 539
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 577
BstDEI CTNAG 5 cut(s) 193, 359, 475, 663, 758
BstEII GGTNACC 1 cut(s) 524
BstF5I GGATG 1 cut(s) 763
BstFNI CGCG 1 cut(s) 932
BstKTI GATC 5 cut(s) 275, 358, 474, 634, 799
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 5 cut(s) 272, 355, 471, 631, 796
BstMWI GCNNNNNNNGC 1 cut(s) 929
BstPI GGTNACC 1 cut(s) 524
BstSFI CTRYAG 1 cut(s) 651
BstUI CGCG 1 cut(s) 932
BstV1I GCAGC 2 cut(s) 601, 799
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 3 cut(s) 355, 471, 631
BstYI RGATCY 3 cut(s) 355, 471, 631
Bsu15I ATCGAT 1 cut(s) 176
BsuTUI ATCGAT 1 cut(s) 176
BtsCI GGATG 1 cut(s) 763
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 3 cut(s) 66, 201, 211
Cac8I GCNNGC 1 cut(s) 577
CaiI CAGNNNCTG 1 cut(s) 65
Cfr10I RCCGGY 2 cut(s) 625, 727
Cfr13I GGNCC 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 176
CviAII CATG 3 cut(s) 164, 464, 925
DdeI CTNAG 5 cut(s) 193, 359, 475, 663, 758
DpnI GATC 5 cut(s) 274, 357, 473, 633, 798
DpnII GATC 5 cut(s) 272, 355, 471, 631, 796
DraI TTTAAA 1 cut(s) 754
Eam1104I CTCTTC 2 cut(s) 534, 539
EarI CTCTTC 2 cut(s) 534, 539
Eco130I CCWWGG 2 cut(s) 247, 880
Eco32I GATATC 1 cut(s) 1012
Eco47I GGWCC 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 983
Eco91I GGTNACC 1 cut(s) 524
EcoO65I GGTNACC 1 cut(s) 524
EcoRV GATATC 1 cut(s) 1012
EcoT14I CCWWGG 2 cut(s) 247, 880
ErhI CCWWGG 2 cut(s) 247, 880
FaeI CATG 3 cut(s) 167, 467, 928
FatI CATG 3 cut(s) 163, 463, 924
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 3 cut(s) 615, 788, 791
FokI GGATG 1 cut(s) 750
Fsp4HI GCNGC 3 cut(s) 615, 788, 791
FspBI CTAG 2 cut(s) 20, 285
GluI GCNGC 3 cut(s) 615, 788, 791
HapII CCGG 3 cut(s) 270, 626, 728
Hin1II CATG 3 cut(s) 167, 467, 928
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 8 cut(s) 149, 191, 199, 460, 491, 604, 778, 876
HpaII CCGG 3 cut(s) 270, 626, 728
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 2 cut(s) 239, 307
Hpy188III TCNNGA 5 cut(s) 46, 270, 488, 983, 1054
Hpy8I GTNNAC 1 cut(s) 655
Hpy99I CGWCG 1 cut(s) 809
HpyAV CCTTC 3 cut(s) 203, 777, 821
HpyCH4III ACNGT 3 cut(s) 243, 820, 841
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 2 cut(s) 707, 887
HpyF10VI GCNNNNNNNGC 1 cut(s) 929
HpyF3I CTNAG 5 cut(s) 193, 359, 475, 663, 758
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 3 cut(s) 167, 467, 928
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 5 cut(s) 272, 355, 471, 631, 796
LmnI GCTCC 3 cut(s) 118, 747, 920
LpnPI CCDG 6 cut(s) 283, 381, 480, 501, 639, 741
Lsp1109I GCAGC 2 cut(s) 601, 799
LweI GCATC 1 cut(s) 51
MaeI CTAG 2 cut(s) 20, 285
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 3 cut(s) 67, 524, 1018
MalI GATC 5 cut(s) 274, 357, 473, 633, 798
MboI GATC 5 cut(s) 272, 355, 471, 631, 796
MboII GAAGA 5 cut(s) 551, 556, 847, 1055, 1058
MfeI CAATTG 1 cut(s) 182
MflI RGATCY 3 cut(s) 355, 471, 631
MluCI AATT 3 cut(s) 79, 182, 553
MlyI GAGTC 3 cut(s) 185, 208, 613
MmeI TCCRAC 1 cut(s) 539
MnlI CCTC 8 cut(s) 341, 403, 449, 565, 586, 712, 768, 979
MroI TCCGGA 1 cut(s) 269
MroXI GAANNNNTTC 2 cut(s) 265, 718
MseI TTAA 7 cut(s) 38, 96, 620, 698, 753, 822, 849
MslI CAYNNNNRTG 1 cut(s) 534
MspI CCGG 3 cut(s) 270, 626, 728
MunI CAATTG 1 cut(s) 182
MvnI CGCG 1 cut(s) 932
MwoI GCNNNNNNNGC 1 cut(s) 929
NdeII GATC 5 cut(s) 272, 355, 471, 631, 796
NlaIII CATG 3 cut(s) 167, 467, 928
NlaIV GGNNCC 3 cut(s) 342, 633, 922
NmuCI GTSAC 1 cut(s) 524
NspV TTCGAA 1 cut(s) 152
PdmI GAANNNNTTC 2 cut(s) 265, 718
PfeI GAWTC 5 cut(s) 149, 460, 491, 778, 876
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 3 cut(s) 616, 789, 792
PleI GAGTC 3 cut(s) 185, 207, 612
PpsI GAGTC 3 cut(s) 185, 207, 612
PsiI TTATAA 1 cut(s) 335
PspEI GGTNACC 1 cut(s) 524
PspN4I GGNNCC 3 cut(s) 342, 633, 922
PspPI GGNCC 1 cut(s) 170
PsrI GAACNNNNNNTAC 2 cut(s) 373, 405
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 3 cut(s) 355, 471, 631
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 7 cut(s) 38, 96, 620, 698, 753, 822, 849
SatI GCNGC 3 cut(s) 615, 788, 791
Sau3AI GATC 5 cut(s) 272, 355, 471, 631, 796
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 3 cut(s) 185, 208, 613
SfaNI GCATC 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 651
SfuI TTCGAA 1 cut(s) 152
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 534
SpeI ACTAGT 1 cut(s) 284
Sse9I AATT 3 cut(s) 79, 182, 553
SsiI CCGC 6 cut(s) 5, 168, 791, 902, 954, 1007
SspMI CTAG 2 cut(s) 20, 285
StyI CCWWGG 2 cut(s) 247, 880
TaaI ACNGT 3 cut(s) 243, 820, 841
TaiI ACGT 1 cut(s) 810
TaqI TCGA 4 cut(s) 152, 176, 299, 770
TasI AATT 3 cut(s) 79, 182, 553
TauI GCSGC 1 cut(s) 793
TfiI GAWTC 5 cut(s) 149, 460, 491, 778, 876
Tru1I TTAA 7 cut(s) 38, 96, 620, 698, 753, 822, 849
Tru9I TTAA 7 cut(s) 38, 96, 620, 698, 753, 822, 849
TscAI CASTG 3 cut(s) 66, 201, 211
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 2 cut(s) 614, 787
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 3 cut(s) 72, 152, 552
TspRI CASTG 3 cut(s) 66, 201, 211
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 654
XmnI GAANNNNTTC 2 cut(s) 265, 718
XspI CTAG 2 cut(s) 20, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.