FvH4_6g12300

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001977
Physical Location & Seq
Reverse (-)
7419063 .. 7420112
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12300.t1

Sequence Viewer

Length: 1050 bp
ATGGTCTCATTATCCATTTCCACCAACTTAGCTTCCTTTGCTCTTCTCATTTTCATCCTCAGAGCCTCAGCTTCAGACACCAATTCCTCATTTTCTTTCACCAAGTTTGGTAAAGATCCAAGCTTTGAGTCCAGTATTTCTCTTTATGGAGATGCCAAGGTTGTTAATGGTTCAATTCAGCTCACTAGTTCAGTGAGCTCAAGTGCTGGGCGAGGCATGTACAAGAAAGCCCTCAAGCTTGGTGAAGGTAAGCCTAAGAAATCAGTGTCTTTTTCCAGTCACTTCACTTTGTCTATGTCCAAAGAAGATGGGGATGGTTTGGCCTTTGTTATAGTTCCAAGTGGTTTGAATCTTAGCCTGTTTGGTAATAGCTCTTTTGGGCTTGATATGGGATATGGGAAAAGTAAATTGAAAGTGGTTGCAGTTAAGTTGAAGTATGATTACTTGGTTGGTAAGGTCCATGTGGGGATTGATGTGGGTAGTTCTGTATCAGCTAGAGTTAACAATGCTTCAGCTATCAAATTGAATCTAACTAGTGGTGATAGAGCAAATGCTTGGATTGATTATGAAGCCGGTTCGAAAAGAATTGAAGTGAGATTGAGTCAATTGGGTGGTTCAAGGCCAGCTGATCCTTTGCTGTGGTACCCAATTGACTTGTCCAAATTGTGGGGAGATGAGAAAGTGTTTGTGGGCTTAAGTGCACAGAATAGGAATTCTTCTCAAACTTGTTCTATATACTCATGGAGCTTTGAGCAGAGGCATGTGCCGGACTGGATGCATTCGCAGCCGCTAGATCCTAAGACCTATTCTAAGAGCTCGAAGCCGGTCACAGTTGAGAAGAGGAAGGATTGTGTTTTGAGGGCTGTTGCTGCAATGGTTCTTGGTGTTGCTTGTGGAGCATTGGCATCATACATTGTGTTGTATTTGTGGAGAATCTTTGGTAATAGGCGTCCGGTGGTGCCAGAAGAGTATGCGATGCAGCCTAAAGAATTCGAGTACAAGAAAATGAAGGTAGTGGTAGATAAATCCATCGAAGATGGAAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

350

Amino Acids

38.14

Weight (kDa)

9.51

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 29 - 264 7.2e-50 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 642
AccB1I GGYRCC 2 cut(s) 642, 958
AccB7I CCANNNNNTGG 1 cut(s) 666
AciI CCGC 1 cut(s) 788
AclWI GGATC 3 cut(s) 110, 623, 788
AcsI RAATTY 2 cut(s) 712, 989
AcuI CTGAAG 2 cut(s) 57, 495
AcyI GRCGYC 1 cut(s) 949
AfaI GTAC 3 cut(s) 221, 644, 998
AfiI CCNNNNNNNGG 1 cut(s) 666
AflII CTTAAG 1 cut(s) 694
AgsI TTSAA 7 cut(s) 174, 349, 412, 433, 526, 590, 618
AhlI ACTAGT 2 cut(s) 185, 533
Alw21I GWGCWC 3 cut(s) 200, 703, 818
Alw26I GTCTC 1 cut(s) 10
Alw44I GTGCAC 1 cut(s) 699
AlwI GGATC 3 cut(s) 110, 623, 788
AoxI GGCC 2 cut(s) 321, 620
ApaLI GTGCAC 1 cut(s) 699
ApeKI GCWGC 3 cut(s) 784, 869, 979
ApoI RAATTY 2 cut(s) 712, 989
Asp718I GGTACC 1 cut(s) 642
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 3 cut(s) 91, 254, 551
AsuII TTCGAA 1 cut(s) 578
AvaII GGWCC 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 703
BanI GGYRCC 2 cut(s) 642, 958
BanII GRGCYC 2 cut(s) 200, 818
BarI GAAGNNNNNNTAC 2 cut(s) 425, 457
Bbv12I GWGCWC 3 cut(s) 200, 703, 818
BbvCI CCTCAGC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 796, 856, 991
BccI CCATC 4 cut(s) 302, 308, 1031, 1037
BcoDI GTCTC 1 cut(s) 10
BcuI ACTAGT 2 cut(s) 185, 533
BfaI CTAG 4 cut(s) 186, 495, 534, 791
BfrI CTTAAG 1 cut(s) 694
BisI GCNGC 4 cut(s) 785, 788, 870, 980
BlsI GCNGC 4 cut(s) 786, 789, 871, 981
Bme18I GGWCC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 644, 960
BmsI GCATC 4 cut(s) 142, 765, 914, 966
Bpu10I CCTNAGC 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 578
BpuEI CTTGAG 2 cut(s) 184, 218
BsaHI GRCGYC 1 cut(s) 949
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 952
Bsc4I CCNNNNNNNGG 1 cut(s) 666
Bse118I RCCGGY 2 cut(s) 572, 823
Bse1I ACTGG 3 cut(s) 132, 276, 776
Bse3DI GCAATG 1 cut(s) 879
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 3 cut(s) 54, 319, 780
BseLI CCNNNNNNNGG 1 cut(s) 666
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 2 cut(s) 73, 81
BseNI ACTGG 3 cut(s) 132, 276, 776
BseSI GKGCMC 1 cut(s) 703
BseXI GCAGC 3 cut(s) 796, 856, 991
BseYI CCCAGC 1 cut(s) 206
BshFI GGCC 2 cut(s) 323, 622
BshNI GGYRCC 2 cut(s) 642, 958
BsiHKAI GWGCWC 3 cut(s) 200, 703, 818
BsiSI CCGG 4 cut(s) 573, 767, 824, 953
BslI CCNNNNNNNGG 1 cut(s) 666
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 2 cut(s) 323, 622
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 3 cut(s) 200, 703, 818
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 3 cut(s) 115, 628, 793
BspACI CCGC 1 cut(s) 788
BspANI GGCC 2 cut(s) 323, 622
BspCNI CTCAG 2 cut(s) 72, 80
BspLI GGNNCC 2 cut(s) 644, 960
BspPI GGATC 3 cut(s) 110, 623, 788
BspQI GCTCTTC 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 578
BspT107I GGYRCC 2 cut(s) 642, 958
BspTI CTTAAG 1 cut(s) 694
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 879
BsrFI RCCGGY 2 cut(s) 572, 823
BsrGI TGTACA 1 cut(s) 219
BsrI ACTGG 3 cut(s) 132, 276, 776
BssAI RCCGGY 2 cut(s) 572, 823
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 3 cut(s) 115, 628, 793
BssNI GRCGYC 1 cut(s) 949
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 832
Bst6I CTCTTC 3 cut(s) 48, 833, 960
BstACI GRCGYC 1 cut(s) 949
BstAFI CTTAAG 1 cut(s) 694
BstAUI TGTACA 1 cut(s) 219
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 624
BstDEI CTNAG 7 cut(s) 28, 59, 67, 255, 353, 798, 810
BstF5I GGATG 3 cut(s) 54, 319, 780
BstKTI GATC 3 cut(s) 118, 631, 796
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 3 cut(s) 115, 628, 793
BstMWI GCNNNNNNNGC 4 cut(s) 38, 784, 869, 896
BstNSI RCATGY 2 cut(s) 220, 764
BstSLI GKGCMC 1 cut(s) 703
BstV1I GCAGC 3 cut(s) 796, 856, 991
BstX2I RGATCY 2 cut(s) 115, 793
BstYI RGATCY 2 cut(s) 115, 793
BsuRI GGCC 2 cut(s) 323, 622
BtgZI GCGATG 1 cut(s) 989
BtsCI GGATG 3 cut(s) 54, 319, 780
BtsIMutI CAGTG 2 cut(s) 198, 270
Cac8I GCNNGC 1 cut(s) 624
Cfr10I RCCGGY 2 cut(s) 572, 823
Cfr13I GGNCC 1 cut(s) 457
CseI GACGC 1 cut(s) 938
Csp6I GTAC 3 cut(s) 220, 643, 997
CviAII CATG 4 cut(s) 217, 461, 741, 761
CviQI GTAC 3 cut(s) 220, 643, 997
DdeI CTNAG 7 cut(s) 28, 59, 67, 255, 353, 798, 810
DpnI GATC 3 cut(s) 117, 630, 795
DpnII GATC 3 cut(s) 115, 628, 793
Eam1104I CTCTTC 3 cut(s) 48, 833, 960
EarI CTCTTC 3 cut(s) 48, 833, 960
Ecl136II GAGCTC 2 cut(s) 198, 816
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 2 cut(s) 200, 818
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 2 cut(s) 198, 816
Eco57I CTGAAG 2 cut(s) 57, 495
EcoICRI GAGCTC 2 cut(s) 198, 816
EcoRI GAATTC 2 cut(s) 712, 989
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 780
EcoT38I GRGCYC 2 cut(s) 200, 818
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 4 cut(s) 220, 464, 744, 764
FatI CATG 4 cut(s) 216, 460, 740, 760
Fnu4HI GCNGC 4 cut(s) 785, 788, 870, 980
FokI GGATG 3 cut(s) 41, 326, 787
FriOI GRGCYC 2 cut(s) 200, 818
Fsp4HI GCNGC 4 cut(s) 785, 788, 870, 980
FspBI CTAG 4 cut(s) 186, 495, 534, 791
GluI GCNGC 4 cut(s) 785, 788, 870, 980
GsaI CCCAGC 1 cut(s) 210
HaeIII GGCC 2 cut(s) 323, 622
HapII CCGG 4 cut(s) 573, 767, 824, 953
HgaI GACGC 1 cut(s) 938
Hin1I GRCGYC 1 cut(s) 949
Hin1II CATG 4 cut(s) 220, 464, 744, 764
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 2 cut(s) 121, 236
HinfI GANTC 5 cut(s) 128, 349, 526, 601, 933
HpaI GTTAAC 1 cut(s) 502
HpaII CCGG 4 cut(s) 573, 767, 824, 953
HphI GGTGA 3 cut(s) 91, 254, 551
Hpy166II GTNNAC 2 cut(s) 502, 701
Hpy188I TCNGA 2 cut(s) 62, 76
Hpy8I GTNNAC 2 cut(s) 502, 701
HpyAV CCTTC 3 cut(s) 239, 838, 1003
HpyCH4III ACNGT 1 cut(s) 832
HpyCH4V TGCA 5 cut(s) 422, 701, 778, 872, 979
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 784, 869, 896
HpyF3I CTNAG 7 cut(s) 28, 59, 67, 255, 353, 798, 810
Hsp92I GRCGYC 1 cut(s) 949
Hsp92II CATG 4 cut(s) 220, 464, 744, 764
KpnI GGTACC 1 cut(s) 646
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 3 cut(s) 115, 628, 793
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 744, 896
Lsp1109I GCAGC 3 cut(s) 796, 856, 991
LweI GCATC 4 cut(s) 142, 765, 914, 966
MaeI CTAG 4 cut(s) 186, 495, 534, 791
MaeIII GTNAC 2 cut(s) 278, 826
MalI GATC 3 cut(s) 117, 630, 795
MboI GATC 3 cut(s) 115, 628, 793
MboII GAAGA 6 cut(s) 35, 317, 708, 850, 977, 1046
MfeI CAATTG 2 cut(s) 605, 648
MflI RGATCY 2 cut(s) 115, 793
MhlI GDGCHC 3 cut(s) 200, 703, 818
MlyI GAGTC 2 cut(s) 137, 610
MnlI CCTC 8 cut(s) 68, 76, 97, 206, 242, 750, 834, 852
Mph1103I ATGCAT 1 cut(s) 780
MseI TTAA 4 cut(s) 165, 426, 501, 695
MspA1I CMGCKG 1 cut(s) 626
MspCI CTTAAG 1 cut(s) 694
MspI CCGG 4 cut(s) 573, 767, 824, 953
MunI CAATTG 2 cut(s) 605, 648
Mva1269I GAATGC 1 cut(s) 778
MwoI GCNNNNNNNGC 4 cut(s) 38, 784, 869, 896
NdeII GATC 3 cut(s) 115, 628, 793
NlaIII CATG 4 cut(s) 220, 464, 744, 764
NlaIV GGNNCC 2 cut(s) 644, 960
NmuCI GTSAC 2 cut(s) 278, 826
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 2 cut(s) 220, 764
NspV TTCGAA 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 48
PctI GAATGC 1 cut(s) 778
PfeI GAWTC 3 cut(s) 349, 526, 933
PflMI CCANNNNNTGG 1 cut(s) 666
PkrI GCNGC 4 cut(s) 786, 789, 871, 981
PleI GAGTC 2 cut(s) 136, 609
PpsI GAGTC 2 cut(s) 136, 609
Psp124BI GAGCTC 2 cut(s) 200, 818
PspFI CCCAGC 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 644, 960
PspPI GGNCC 1 cut(s) 457
PsuI RGATCY 2 cut(s) 115, 793
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 3 cut(s) 221, 644, 998
RsaNI GTAC 3 cut(s) 220, 643, 997
SacI GAGCTC 2 cut(s) 200, 818
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 4 cut(s) 165, 426, 501, 695
SatI GCNGC 4 cut(s) 785, 788, 870, 980
Sau3AI GATC 3 cut(s) 115, 628, 793
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 2 cut(s) 137, 610
SduI GDGCHC 3 cut(s) 200, 703, 818
SfaNI GCATC 4 cut(s) 142, 765, 914, 966
SfuI TTCGAA 1 cut(s) 578
SinI GGWCC 1 cut(s) 457
SmlI CTYRAG 3 cut(s) 199, 233, 694
SmoI CTYRAG 3 cut(s) 199, 233, 694
SpeI ACTAGT 2 cut(s) 185, 533
SsiI CCGC 1 cut(s) 788
SspMI CTAG 4 cut(s) 186, 495, 534, 791
SstI GAGCTC 2 cut(s) 200, 818
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 832
TaqI TCGA 4 cut(s) 578, 818, 993, 1032
TatI WGTACW 2 cut(s) 219, 996
TauI GCSGC 1 cut(s) 790
TfiI GAWTC 3 cut(s) 349, 526, 933
Tru1I TTAA 4 cut(s) 165, 426, 501, 695
Tru9I TTAA 4 cut(s) 165, 426, 501, 695
TscAI CASTG 2 cut(s) 198, 270
TseFI GTSAC 2 cut(s) 278, 826
TseI GCWGC 3 cut(s) 784, 869, 979
Tsp45I GTSAC 2 cut(s) 278, 826
TspDTI ATGAA 3 cut(s) 43, 582, 1022
TspRI CASTG 2 cut(s) 198, 270
Van91I CCANNNNNTGG 1 cut(s) 666
Vha464I CTTAAG 1 cut(s) 694
VneI GTGCAC 1 cut(s) 699
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 2 cut(s) 712, 989
XceI RCATGY 2 cut(s) 220, 764
XspI CTAG 4 cut(s) 186, 495, 534, 791
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.