Rh6BG239800

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001977
Physical Location & Seq
Reverse (-)
44627335 .. 44631039
3705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG239800.1

Sequence Viewer

Length: 906 bp
ATGTGTTCTCATGTTAAATCACTGGGTTCTGAAAAATTGTCCGGTGGACCTCTGCGAACCCAACCCTCATCGACCAAGCCCTCTGAAGCTCCAGCTCATCGTCTTCCTCGAAGAGTTCTCCTCACATCCGACCTTTTTGTTGCTGTGCTCCCGCTCTTTTTGTCGTCCGGCAACGGCGATGGTATTGTCGTCATTTTCGTTCCCGGCGATTTTGGGTCGAGGTTCTCCGGTAAGGGCCCGTTTGGGCTTGATGGTGAGAATCGATTTCTGGGTATTGAATTCGACACTGAAATGAATGAAAATGTGAATGATGTGAATGCGAATCATATAGGGGTGAATGTGGGTAGCTTTGTATCTCTGACTGTTGGGAATGTTACTGCATTGAATTTGGTGCTTAATAGTGGAGAAAAGATGAAATCTTGGATTGATTATGATGCTAGTTCGAAAAGATTAGAGATAAGGTTGAGTAAGTTGGGTGAACCAAGGCCTTATAATCCGATTGTTGCGCATGGCATAGATTTATTGGAAATGTGGAAAGATAAGGATGTGTATGCAGGGATAAGCTCGTCGAATTCGAATGGCAGTTCCTCGCAGATTTGTAGTGTGTATTCTTGGAGTTTTAGGATGAGAAAGGTTCCGAGGATGCATTCGCTTCCGGTGAATCCGAGGGGTTATTTGGATGATCAGCATGGTGAAAATCCGGGTCTGCATAAGAGGATGGCTTGTCCATTGTCAATTCTTGCTGGGATTATATTCATGACTGGGTGTGGAGCTCTGGTTTCATTTTTCATGCTGTTTTTGTGGGCTATAATTGTTAACAGGCACACGGTTTTCCCTGCTGAAGTGCCCCCAGATGAGTTTCCGGTGAAGCCTAATCCTACGGATTTCAGATTCAGCAATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

301

Amino Acids

32.97

Weight (kDa)

7.73

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 78 - 214 2.9e-31 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
Acc16I TGCGCA 1 cut(s) 507
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 1 cut(s) 152
AcsI RAATTY 3 cut(s) 278, 385, 571
AcuI CTGAAG 2 cut(s) 105, 861
AgsI TTSAA 2 cut(s) 278, 385
AluBI AGCT 5 cut(s) 89, 95, 348, 564, 773
AluI AGCT 5 cut(s) 89, 95, 348, 564, 773
Alw21I GWGCWC 2 cut(s) 150, 775
AoxI GGCC 2 cut(s) 235, 485
ApaI GGGCCC 1 cut(s) 239
ApoI RAATTY 3 cut(s) 278, 385, 571
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 3 cut(s) 47, 235, 236
AsuC2I CCSGG 2 cut(s) 204, 702
AsuHPI GGTGA 6 cut(s) 266, 346, 488, 670, 704, 877
AsuII TTCGAA 2 cut(s) 443, 575
AvaII GGWCC 1 cut(s) 47
BaeGI GKGCMC 2 cut(s) 239, 849
BanII GRGCYC 2 cut(s) 239, 775
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 2 cut(s) 150, 775
BccI CCATC 3 cut(s) 173, 245, 712
BceAI ACGGC 1 cut(s) 190
BclI TGATCA 1 cut(s) 682
BcnI CCSGG 2 cut(s) 204, 702
BfaI CTAG 1 cut(s) 438
Bme1390I CCNGG 2 cut(s) 204, 702
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 3 cut(s) 47, 235, 236
BmiI GGNNCC 2 cut(s) 237, 636
BmrFI CCNGG 2 cut(s) 204, 702
BmrI ACTGGG 2 cut(s) 32, 771
BmsI GCATC 2 cut(s) 424, 633
BmuI ACTGGG 2 cut(s) 32, 771
BpiI GAAGAC 1 cut(s) 95
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 75
Bpu14I TTCGAA 2 cut(s) 443, 575
BpuMI CCSGG 2 cut(s) 204, 702
Bsa29I ATCGAT 1 cut(s) 262
BsaJI CCNNGG 3 cut(s) 482, 638, 665
BsaWI WCCGGW 4 cut(s) 41, 227, 655, 862
BsaXI ACNNNNNCTCC 2 cut(s) 762, 792
Bse1I ACTGG 2 cut(s) 27, 766
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 482, 638, 665
BseGI GGATG 6 cut(s) 125, 550, 630, 648, 685, 723
BseNI ACTGG 2 cut(s) 27, 766
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 2 cut(s) 239, 849
BseYI CCCAGC 1 cut(s) 743
BshFI GGCC 2 cut(s) 237, 487
BshVI ATCGAT 1 cut(s) 262
BsiHKAI GWGCWC 2 cut(s) 150, 775
BsiSI CCGG 7 cut(s) 42, 168, 204, 228, 656, 701, 863
BsmI GAATGC 2 cut(s) 322, 646
BsnI GGCC 2 cut(s) 237, 487
Bsp119I TTCGAA 2 cut(s) 443, 575
Bsp120I GGGCCC 1 cut(s) 235
Bsp1286I GDGCHC 4 cut(s) 150, 239, 775, 849
Bsp143I GATC 1 cut(s) 682
BspACI CCGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 237, 487
BspDI ATCGAT 1 cut(s) 262
BspHI TCATGA 1 cut(s) 756
BspLI GGNNCC 2 cut(s) 237, 636
BspT104I TTCGAA 2 cut(s) 443, 575
BsrBI CCGCTC 1 cut(s) 154
BsrI ACTGG 2 cut(s) 27, 766
BssECI CCNNGG 3 cut(s) 482, 638, 665
BssMI GATC 1 cut(s) 682
BssT1I CCWWGG 1 cut(s) 482
Bst4CI ACNGT 2 cut(s) 364, 829
Bst6I CTCTTC 1 cut(s) 106
BstBI TTCGAA 2 cut(s) 443, 575
BstF5I GGATG 6 cut(s) 125, 550, 630, 648, 685, 723
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 1 cut(s) 685
BstMBI GATC 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 202, 700
BstSLI GKGCMC 2 cut(s) 239, 849
BstV2I GAAGAC 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 2 cut(s) 237, 487
BsuTUI ATCGAT 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 6 cut(s) 125, 550, 630, 648, 685, 723
BtsIMutI CAGTG 2 cut(s) 20, 285
CciI TCATGA 1 cut(s) 756
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 3 cut(s) 47, 235, 236
ClaI ATCGAT 1 cut(s) 262
CviAII CATG 5 cut(s) 11, 509, 689, 757, 790
DpnI GATC 1 cut(s) 684
DpnII GATC 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 773
Eco130I CCWWGG 1 cut(s) 482
Eco147I AGGCCT 1 cut(s) 487
Eco24I GRGCYC 2 cut(s) 239, 775
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 773
Eco57I CTGAAG 2 cut(s) 105, 861
EcoICRI GAGCTC 1 cut(s) 773
EcoO109I RGGNCCY 1 cut(s) 235
EcoRI GAATTC 2 cut(s) 278, 571
EcoT14I CCWWGG 1 cut(s) 482
EcoT22I ATGCAT 1 cut(s) 648
EcoT38I GRGCYC 2 cut(s) 239, 775
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 5 cut(s) 14, 512, 692, 760, 793
FatI CATG 5 cut(s) 10, 508, 688, 756, 789
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 682
FokI GGATG 6 cut(s) 112, 557, 637, 655, 692, 730
FriOI GRGCYC 2 cut(s) 239, 775
FspBI CTAG 1 cut(s) 438
FspI TGCGCA 1 cut(s) 507
GlaI GCGC 1 cut(s) 507
GsaI CCCAGC 1 cut(s) 747
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 2 cut(s) 237, 487
HapII CCGG 7 cut(s) 42, 168, 204, 228, 656, 701, 863
HhaI GCGC 1 cut(s) 508
Hin1II CATG 5 cut(s) 14, 512, 692, 760, 793
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HinfI GANTC 4 cut(s) 259, 322, 661, 891
HpaI GTTAAC 1 cut(s) 817
HpaII CCGG 7 cut(s) 42, 168, 204, 228, 656, 701, 863
HphI GGTGA 6 cut(s) 266, 346, 488, 670, 704, 877
Hpy166II GTNNAC 3 cut(s) 47, 479, 817
Hpy188I TCNGA 8 cut(s) 31, 85, 130, 360, 498, 639, 666, 890
Hpy188III TCNNGA 1 cut(s) 757
Hpy8I GTNNAC 3 cut(s) 47, 479, 817
Hpy99I CGWCG 1 cut(s) 571
HpyCH4III ACNGT 2 cut(s) 364, 829
HpyCH4V TGCA 4 cut(s) 380, 554, 646, 709
Hsp92II CATG 5 cut(s) 14, 512, 692, 760, 793
HspAI GCGC 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 682
KspAI GTTAAC 1 cut(s) 817
Kzo9I GATC 1 cut(s) 682
LmnI GCTCC 3 cut(s) 94, 153, 770
LweI GCATC 2 cut(s) 424, 633
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 373
MalI GATC 1 cut(s) 684
MbiI CCGCTC 1 cut(s) 154
MboI GATC 1 cut(s) 682
MboII GAAGA 2 cut(s) 95, 123
MhlI GDGCHC 4 cut(s) 150, 239, 775, 849
MluCI AATT 6 cut(s) 35, 278, 385, 571, 735, 810
MmeI TCCRAC 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 648
MseI TTAA 3 cut(s) 15, 396, 816
MslI CAYNNNNRTG 1 cut(s) 290
MspI CCGG 7 cut(s) 42, 168, 204, 228, 656, 701, 863
MspR9I CCNGG 2 cut(s) 204, 702
Mva1269I GAATGC 2 cut(s) 322, 646
NciI CCSGG 2 cut(s) 204, 702
NdeII GATC 1 cut(s) 682
NlaIII CATG 5 cut(s) 14, 512, 692, 760, 793
NlaIV GGNNCC 2 cut(s) 237, 636
NsbI TGCGCA 1 cut(s) 507
NsiI ATGCAT 1 cut(s) 648
NspV TTCGAA 2 cut(s) 443, 575
PagI TCATGA 1 cut(s) 756
PceI AGGCCT 1 cut(s) 487
PcsI WCGNNNNNNNCGW 4 cut(s) 106, 195, 204, 572
PctI GAATGC 2 cut(s) 322, 646
PfeI GAWTC 4 cut(s) 259, 322, 661, 891
PsiI TTATAA 1 cut(s) 492
Psp124BI GAGCTC 1 cut(s) 775
PspFI CCCAGC 1 cut(s) 743
PspN4I GGNNCC 2 cut(s) 237, 636
PspOMI GGGCCC 1 cut(s) 235
PspPI GGNCC 3 cut(s) 47, 235, 236
RseI CAYNNNNRTG 1 cut(s) 290
SacI GAGCTC 1 cut(s) 775
SaqAI TTAA 3 cut(s) 15, 396, 816
Sau3AI GATC 1 cut(s) 682
Sau96I GGNCC 3 cut(s) 47, 235, 236
ScrFI CCNGG 2 cut(s) 204, 702
SduI GDGCHC 4 cut(s) 150, 239, 775, 849
SfaNI GCATC 2 cut(s) 424, 633
SfuI TTCGAA 2 cut(s) 443, 575
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 6 cut(s) 35, 278, 385, 571, 735, 810
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 438
SstI GAGCTC 1 cut(s) 775
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 2 cut(s) 202, 700
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 364, 829
TaqI TCGA 8 cut(s) 71, 109, 218, 262, 282, 443, 569, 575
TasI AATT 6 cut(s) 35, 278, 385, 571, 735, 810
TfiI GAWTC 4 cut(s) 259, 322, 661, 891
Tru1I TTAA 3 cut(s) 15, 396, 816
Tru9I TTAA 3 cut(s) 15, 396, 816
TscAI CASTG 2 cut(s) 27, 292
TspDTI ATGAA 6 cut(s) 308, 312, 428, 745, 771, 778
TspGWI ACGGA 1 cut(s) 896
TspRI CASTG 2 cut(s) 27, 292
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 3 cut(s) 278, 385, 571
XspI CTAG 1 cut(s) 438
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.