Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001977

Physical Location & Seq

Genomic Coordinates Forward (+)

16067204 .. 16067548

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAGTAGGAATTCGTCTCAGACATGTTCTGTATACTCTTGGAGCTTTGAGCAAAGGCATGTGCCTCACTGGACGCACTCGCAGCCGGTAGATCCTAAGGCCGCTGCGAAGAACTCGAAGGCGGAGGAAAAGAAAAGGGATTGTACAAAAAAGGCTTTCGGTGCAATGGTTTTCGGTGTTGCTTGTGGAGCATTGGCGTCATTTGTCGGACTGTATCTGTGGACCGTCTTTGGTAACAGGCGTCCGGTGGTGCCGGAGGAGTATGCTGAGAAGCAGAAAGAGTTTGAGTACGAGAAAATGAGAGCAGTTGCAGATAATAAAACCATGGAAGATGGAAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB

Protein Analysis

115

Amino Acids

12.98

Weight (kDa)

9.01

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09035 AT3G09190 AT5G01090
fragaria_vesca	FvH4_6g12300 FvH4_7g23770
malus_domestica	MD01G1145100.v1.1 MD07G1165700.v1.1 MD07G1211800.v1.1 MD12G1085400.v1.1
prunus_persica	Prupe.2G244400_v2.0.a1 Prupe.6G268200_v2.0.a1
pyrus_communis	pycom01g16450 pycom04g13040 pycom04g13050 pycom07g19500 pycom12g08030 pycom12g15000
rosa_chinensis	RchiOBHm_Chr1g0369101 RchiOBHm_Chr3g0464131
rosa_laevigata	RLG00000024720 RLG00000027158
rosa_multiflora	Rmu_sc0001552.1_g000037 Rmu_sc0003337.1_g000012 Rmu_sc0004250.1_g000019 Rmu_sc0010401.1_g000004
rosa_roxburghii	Rroxscaffold_4G00288000 Rroxscaffold_6G00415970
rosa_rugosa	Rorug01G0348100 Rorug03G0070700
rosa_samantha	Rh1AG354900 Rh1BG318200 Rh1BG335600 Rh1CG332600 Rh1DG348900 Rh2BG629000 Rh2CG320200 Rh2DG640800 Rh3BG132100 Rh3CG134300 Rh3DG133300 Rh4DG353800 Rh6BG239800 Rh7DG015800
rosa_wichuraiana	Rw1G031320 Rw3G010810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	2 cut(s)	102, 122
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	10
AcyI	GRCGYC	2 cut(s)	197, 241
AfaI	GTAC	2 cut(s)	145, 290
AflIII	ACRYGT	1 cut(s)	23
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	82, 104
ApoI	RAATTY	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	222
AxyI	CCTNAGG	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	91, 94
BccI	CCATC	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	21
BisI	GCNGC	3 cut(s)	83, 102, 105
BlsI	GCNGC	3 cut(s)	84, 103, 106
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	197, 241
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	32, 258
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	91, 94
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	250
BsiSI	CCGG	3 cut(s)	86, 245, 254
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	101
Bsp1407I	TGTACA	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	2 cut(s)	102, 122
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	31, 259
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	91
BssNAI	GTATAC	1 cut(s)	34
BssNI	GRCGYC	2 cut(s)	197, 241
BssT1I	CCWWGG	1 cut(s)	324
Bst1107I	GTATAC	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	213, 226
BstACI	GRCGYC	2 cut(s)	197, 241
BstAUI	TGTACA	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	18, 96, 267
BstDSI	CCRYGG	1 cut(s)	324
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 161, 188
BstNSI	RCATGY	2 cut(s)	27, 62
BstV1I	GCAGC	2 cut(s)	91, 94
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BstZ17I	GTATAC	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	3 cut(s)	82, 186, 230
Csp6I	GTAC	2 cut(s)	144, 289
CviAII	CATG	3 cut(s)	24, 59, 325
CviJI	RGCY	4 cut(s)	45, 85, 101, 155
CviKI_1	RGCY	4 cut(s)	45, 85, 101, 155
CviQI	GTAC	2 cut(s)	144, 289
DdeI	CTNAG	3 cut(s)	18, 96, 267
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	3 cut(s)	27, 62, 328
FaiI	YATR	5 cut(s)	25, 34, 60, 264, 326
FatI	CATG	3 cut(s)	23, 58, 324
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	83, 102, 105
Fsp4HI	GCNGC	3 cut(s)	83, 102, 105
GluI	GCNGC	3 cut(s)	83, 102, 105
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	3 cut(s)	86, 245, 254
HgaI	GACGC	3 cut(s)	82, 186, 230
Hin1I	GRCGYC	2 cut(s)	197, 241
Hin1II	CATG	3 cut(s)	27, 62, 328
HpaII	CCGG	3 cut(s)	86, 245, 254
Hpy166II	GTNNAC	2 cut(s)	34, 222
Hpy188I	TCNGA	2 cut(s)	21, 209
Hpy8I	GTNNAC	2 cut(s)	34, 222
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	213, 226
HpyCH4V	TGCA	2 cut(s)	164, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 161, 188
HpyF3I	CTNAG	3 cut(s)	18, 96, 267
Hsp92I	GRCGYC	2 cut(s)	197, 241
Hsp92II	CATG	3 cut(s)	27, 62, 328
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	2 cut(s)	42, 188
LpnPI	CCDG	5 cut(s)	55, 99, 223, 258, 267
Lsp1109I	GCAGC	2 cut(s)	91, 94
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	121, 341
MflI	RGATCY	1 cut(s)	91
MluCI	AATT	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	75, 118, 250
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	86, 245, 254
MwoI	GCNNNNNNNGC	3 cut(s)	82, 161, 188
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	3 cut(s)	27, 62, 328
NlaIV	GGNNCC	1 cut(s)	252
NspI	RCATGY	2 cut(s)	27, 62
PciI	ACATGT	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	84, 103, 106
PscI	ACATGT	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	2 cut(s)	145, 290
RsaNI	GTAC	2 cut(s)	144, 289
SatI	GCNGC	3 cut(s)	83, 102, 105
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	222
SetI	ASST	1 cut(s)	47
SinI	GGWCC	1 cut(s)	222
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	2 cut(s)	102, 122
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	213, 226
TaqI	TCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	10
TatI	WGTACW	1 cut(s)	143
TauI	GCSGC	1 cut(s)	104
TscAI	CASTG	1 cut(s)	74
TseI	GCWGC	2 cut(s)	82, 104
TspRI	CASTG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	2 cut(s)	27, 62
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.