AT3G09190

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001977
Physical Location & Seq
Reverse (-)
2821448 .. 2822936
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09190.1

Sequence Viewer

Length: 1038 bp
ATGGCGATATTCAAAACCCTATCTTTTCTGGTCCTTTTATGCTTTGAGATACATGGAACCGCAGGTGTGGATTTCACGTTTTCATTTGATGAATTCGTAAAATCTCAGAGTTTTGACAAGAGTGTTGCTCTGTTTGGAGATTCGAAGCTGGTCAATGACAGTTCTTCGATTCAGCTGACTGACTCAGTGAATCGGACCGAGGGACGAGTCTTTTACAAGAAACCCATCAATCTATTCCAAGGTAAAGAGAGGAACTCCGTTATTTTCTCGACTTACTTCTCGTTTTCGATGCCCAATGAGATTGGTGATGTCTTGGCTTTTGTAATGGTTCCAAGTACTTTGGATCTTAGTCTGTTTGGTAAGAAAGATTACAGTTCCTCTGCTTTAGGGTTTCTATTAGAGTATGCAAAGAACGAGACAGTTGTTGCTTTTGAGTTTGATATCTCCAAGAGAGGAAACCGTGCAAGAGTCTTAATTGGTAGACCTGAGTCTGCCAAAATTAGAAACCTTTCGTTTGTGGGTGACTTGATGATGGATGATGGAGGGATTTTGAGCTGTATGATTGATTATGAGGCAAGTTCTAAGAGAATGAGGGTTCGTTTCAGAAAACGTGGTTCGATAAAGATGTTTGATCCGTTCTTCTCTTTCTCGGTAGACTTGGAGAAGCTTTGGAAAGGTGGTGAAGTCATGGTGGGTTTAAGCTCTGCTAATGGGAACTCTTCCAAGCCACATTTTCTCCATTCATGGAGCTTTGAAATATGGCATCTTGATCCGATATGGGTGCAACCAGCGCCATTAGGACCAAATGAAGGTTTGAAGCCGGACGTTTCCACGGAAATGGAAGAGGGCCGAGAAAATAGTGAGTGTATATGGAGAATGCTTGGTGCTCTGGTCTTGGCTGCAGTATGTGGAGCCGTAGGGGCAATGTCAGCTATGTATCTTTGGACTATTTGCAGTGTTAGGCGGTCAATGGCCGTGGTTCCAGAGGAATGTGCAGTGAGCATTGTGGTCGTTGCAGTTAAAGATGGCAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

345

Amino Acids

38.42

Weight (kDa)

6.47

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 26 - 253 5.5e-42 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 53
AccI GTMKAC 2 cut(s) 481, 654
AciI CCGC 2 cut(s) 60, 964
AclWI GGATC 3 cut(s) 351, 626, 764
AcoI YGGCCR 1 cut(s) 972
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 1 cut(s) 809
AgsI TTSAA 3 cut(s) 13, 755, 817
AluBI AGCT 7 cut(s) 148, 175, 555, 667, 702, 750, 932
AluI AGCT 7 cut(s) 148, 175, 555, 667, 702, 750, 932
Alw21I GWGCWC 1 cut(s) 889
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 3 cut(s) 351, 626, 764
AoxI GGCC 2 cut(s) 847, 972
ApeKI GCWGC 1 cut(s) 899
ApoI RAATTY 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 508
AspLEI GCGC 1 cut(s) 793
AspS9I GGNCC 4 cut(s) 31, 195, 800, 847
AsuHPI GGTGA 3 cut(s) 317, 533, 692
AsuII TTCGAA 1 cut(s) 143
AvaII GGWCC 3 cut(s) 31, 195, 800
Bbv12I GWGCWC 1 cut(s) 889
BbvI GCAGC 1 cut(s) 886
BccI CCATC 4 cut(s) 233, 526, 533, 1019
BceAI ACGGC 2 cut(s) 899, 959
BcgI CGANNNNNNTGC 4 cut(s) 763, 797, 991, 1025
BcoDI GTCTC 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 900
BfoI RGCGCY 1 cut(s) 794
BfuAI ACCTGC 1 cut(s) 53
BglI GCCNNNNNGGC 1 cut(s) 920
BisI GCNGC 1 cut(s) 900
BlsI GCNGC 1 cut(s) 901
BmcAI AGTACT 1 cut(s) 337
Bme18I GGWCC 3 cut(s) 31, 195, 800
BmgT120I GGNCC 4 cut(s) 31, 195, 800, 847
BmiI GGNNCC 4 cut(s) 58, 330, 913, 981
BmsI GCATC 2 cut(s) 279, 772
BoxI GACNNNNGTC 1 cut(s) 487
BplI GAGNNNNNCTC 4 cut(s) 112, 144, 239, 271
Bpu14I TTCGAA 1 cut(s) 143
BsaJI CCNNGG 4 cut(s) 198, 238, 831, 975
BsaXI ACNNNNNCTCC 2 cut(s) 720, 750
Bsc4I CCNNNNNNNGG 1 cut(s) 809
Bse3DI GCAATG 1 cut(s) 930
BseDI CCNNGG 4 cut(s) 198, 238, 831, 975
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 1 cut(s) 809
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 3 cut(s) 119, 198, 477
BseXI GCAGC 1 cut(s) 886
BsgI GTGCAG 1 cut(s) 1014
BshFI GGCC 2 cut(s) 849, 974
BsiHKAI GWGCWC 1 cut(s) 889
BsiSI CCGG 1 cut(s) 821
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 809
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 882
BsnI GGCC 2 cut(s) 849, 974
Bsp119I TTCGAA 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 889
Bsp143I GATC 3 cut(s) 343, 631, 769
BspACI CCGC 2 cut(s) 60, 964
BspANI GGCC 2 cut(s) 849, 974
BspCNI CTCAG 3 cut(s) 118, 197, 478
BspLI GGNNCC 4 cut(s) 58, 330, 913, 981
BspMAI CTGCAG 1 cut(s) 904
BspMI ACCTGC 1 cut(s) 53
BspPI GGATC 3 cut(s) 351, 626, 764
BspT104I TTCGAA 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 930
BssECI CCNNGG 4 cut(s) 198, 238, 831, 975
BssMI GATC 3 cut(s) 343, 631, 769
BssT1I CCWWGG 1 cut(s) 238
Bst4CI ACNGT 4 cut(s) 161, 374, 421, 461
Bst6I CTCTTC 2 cut(s) 724, 837
BstBI TTCGAA 1 cut(s) 143
BstDEI CTNAG 5 cut(s) 105, 184, 347, 486, 582
BstDSI CCRYGG 2 cut(s) 831, 975
BstF5I GGATG 1 cut(s) 541
BstH2I RGCGCY 1 cut(s) 794
BstHHI GCGC 1 cut(s) 793
BstKTI GATC 3 cut(s) 346, 634, 772
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 3 cut(s) 343, 631, 769
BstMWI GCNNNNNNNGC 3 cut(s) 790, 920, 929
BstPAI GACNNNNGTC 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 900
BstV1I GCAGC 1 cut(s) 886
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 838
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 2 cut(s) 849, 974
BtgI CCRYGG 2 cut(s) 831, 975
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 2 cut(s) 961, 1002
BtsIMutI CAGTG 3 cut(s) 192, 961, 1002
BveI ACCTGC 1 cut(s) 53
CfoI GCGC 1 cut(s) 793
Cfr13I GGNCC 4 cut(s) 31, 195, 800, 847
CpoI CGGWCCG 1 cut(s) 195
Csp6I GTAC 1 cut(s) 336
CspCI CAANNNNNGTGG 2 cut(s) 957, 992
CspI CGGWCCG 1 cut(s) 195
CviAII CATG 3 cut(s) 53, 688, 744
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 5 cut(s) 105, 184, 347, 486, 582
DpnI GATC 3 cut(s) 345, 633, 771
DpnII GATC 3 cut(s) 343, 631, 769
EaeI YGGCCR 1 cut(s) 972
Eam1104I CTCTTC 2 cut(s) 724, 837
EarI CTCTTC 2 cut(s) 724, 837
Eco130I CCWWGG 1 cut(s) 238
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 3 cut(s) 31, 195, 800
EcoRI GAATTC 1 cut(s) 92
EcoRV GATATC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 3 cut(s) 56, 691, 747
FaqI GGGAC 1 cut(s) 216
FatI CATG 3 cut(s) 52, 687, 743
FblI GTMKAC 2 cut(s) 481, 654
Fnu4HI GCNGC 1 cut(s) 900
FokI GGATG 1 cut(s) 548
Fsp4HI GCNGC 1 cut(s) 900
GlaI GCGC 1 cut(s) 792
GluI GCNGC 1 cut(s) 900
HaeII RGCGCY 1 cut(s) 794
HaeIII GGCC 2 cut(s) 849, 974
HapII CCGG 1 cut(s) 821
HhaI GCGC 1 cut(s) 793
Hin1II CATG 3 cut(s) 56, 691, 747
Hin6I GCGC 1 cut(s) 791
HinP1I GCGC 1 cut(s) 791
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 7 cut(s) 140, 169, 182, 190, 207, 468, 488
HpaII CCGG 1 cut(s) 821
HphI GGTGA 3 cut(s) 317, 533, 692
Hpy166II GTNNAC 2 cut(s) 482, 655
Hpy188I TCNGA 4 cut(s) 108, 195, 605, 774
Hpy188III TCNNGA 3 cut(s) 268, 767, 983
Hpy8I GTNNAC 2 cut(s) 482, 655
HpyAV CCTTC 1 cut(s) 803
HpyCH4III ACNGT 4 cut(s) 161, 374, 421, 461
HpyCH4IV ACGT 3 cut(s) 77, 610, 825
HpyCH4V TGCA 7 cut(s) 407, 464, 784, 902, 954, 995, 1016
HpyF10VI GCNNNNNNNGC 3 cut(s) 790, 920, 929
HpyF3I CTNAG 5 cut(s) 105, 184, 347, 486, 582
HpySE526I ACGT 3 cut(s) 77, 610, 825
Hsp92II CATG 3 cut(s) 56, 691, 747
HspAI GCGC 1 cut(s) 791
Kzo9I GATC 3 cut(s) 343, 631, 769
LmnI GCTCC 2 cut(s) 747, 911
LpnPI CCDG 8 cut(s) 14, 48, 134, 498, 801, 834, 875, 996
Lsp1109I GCAGC 1 cut(s) 886
LweI GCATC 2 cut(s) 279, 772
MaeII ACGT 3 cut(s) 77, 610, 825
MaeIII GTNAC 1 cut(s) 521
MalI GATC 3 cut(s) 345, 633, 771
MboI GATC 3 cut(s) 343, 631, 769
MboII GAAGA 4 cut(s) 156, 631, 711, 854
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 889
MluCI AATT 3 cut(s) 92, 474, 498
MlyI GAGTC 4 cut(s) 176, 216, 477, 497
MnlI CCTC 9 cut(s) 193, 243, 388, 446, 536, 565, 585, 838, 979
MroXI GAANNNNTTC 1 cut(s) 508
MseI TTAA 3 cut(s) 473, 698, 1020
MslI CAYNNNNRTG 1 cut(s) 836
MspA1I CMGCKG 1 cut(s) 175
MspI CCGG 1 cut(s) 821
Mva1269I GAATGC 1 cut(s) 882
MwoI GCNNNNNNNGC 3 cut(s) 790, 920, 929
NdeII GATC 3 cut(s) 343, 631, 769
NlaIII CATG 3 cut(s) 56, 691, 747
NlaIV GGNNCC 4 cut(s) 58, 330, 913, 981
NmeAIII GCCGAG 1 cut(s) 875
NmuCI GTSAC 1 cut(s) 521
NspV TTCGAA 1 cut(s) 143
PaqCI CACCTGC 1 cut(s) 53
PctI GAATGC 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 508
PfeI GAWTC 3 cut(s) 140, 169, 190
PkrI GCNGC 1 cut(s) 901
PleI GAGTC 4 cut(s) 176, 215, 476, 496
PpsI GAGTC 4 cut(s) 176, 215, 476, 496
PshAI GACNNNNGTC 1 cut(s) 487
PspN4I GGNNCC 4 cut(s) 58, 330, 913, 981
PspPI GGNCC 4 cut(s) 31, 195, 800, 847
PstI CTGCAG 1 cut(s) 904
PsuI RGATCY 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
RseI CAYNNNNRTG 1 cut(s) 836
Rsr2I CGGWCCG 1 cut(s) 195
RsrII CGGWCCG 1 cut(s) 195
SaqAI TTAA 3 cut(s) 473, 698, 1020
SatI GCNGC 1 cut(s) 900
Sau3AI GATC 3 cut(s) 343, 631, 769
Sau96I GGNCC 4 cut(s) 31, 195, 800, 847
ScaI AGTACT 1 cut(s) 337
SchI GAGTC 4 cut(s) 176, 216, 477, 497
SduI GDGCHC 1 cut(s) 889
SfaNI GCATC 2 cut(s) 279, 772
SfcI CTRYAG 1 cut(s) 900
SfuI TTCGAA 1 cut(s) 143
SinI GGWCC 3 cut(s) 31, 195, 800
SmiMI CAYNNNNRTG 1 cut(s) 836
Sse9I AATT 3 cut(s) 92, 474, 498
SsiI CCGC 2 cut(s) 60, 964
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 4 cut(s) 161, 374, 421, 461
TaiI ACGT 3 cut(s) 80, 613, 828
TaqI TCGA 5 cut(s) 143, 167, 269, 287, 617
TaqII GACCGA 1 cut(s) 212
TasI AATT 3 cut(s) 92, 474, 498
TatI WGTACW 1 cut(s) 335
TfiI GAWTC 3 cut(s) 140, 169, 190
Tru1I TTAA 3 cut(s) 473, 698, 1020
Tru9I TTAA 3 cut(s) 473, 698, 1020
TscAI CASTG 3 cut(s) 192, 961, 1002
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 1 cut(s) 899
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 4 cut(s) 72, 105, 732, 822
TspGWI ACGGA 3 cut(s) 247, 624, 848
TspRI CASTG 3 cut(s) 192, 961, 1002
VpaK11BI GGWCC 3 cut(s) 31, 195, 800
XapI RAATTY 1 cut(s) 92
XmiI GTMKAC 2 cut(s) 481, 654
XmnI GAANNNNTTC 1 cut(s) 508
ZrmI AGTACT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.