Rh1BG335600

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001977
Physical Location & Seq
Reverse (-)
47124107 .. 47124562
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG335600.1

Sequence Viewer

Length: 456 bp
ATGAATGATTTGAATGCGAATCATGTAGGGGTGAATGTGGGTAGCGTTGTATATGTGACTGTTGGTAATGTTTATTCATTAAATTTGATGCTTAACAGTGGAGAAAAGATGAAATCTTGGATTGATTATAATACTAGTTCGAAAAGATTAGAGATAAGGTTTAGTAAGTTAGGAGAACCAAGGCCTTATTGTCCAATTGCTGCATATGGCATAGATTTGTTGGCAATGTGGAAAGATAAGGATTTGTATGCAGGTATAAGCTCGTTGAATTCGAGTGGCAATTCCTCGCAAATTAGTAGTGTGAATTCTTGGAGTTTTAGGCTGAGAAAGGTTCCGAGGATGTCACTTCCGGTGAATCCGAGGGAATATTTGGATGATCAGCATGGTCAAGATTCAATGTTGCATAAGCGGATGGCTTGTCCATTGTCAATTCTTGCTGGATGTGTTGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

151

Amino Acids

16.86

Weight (kDa)

9.01

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 3 - 111 1.3e-20 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 242
AciI CCGC 1 cut(s) 409
AcsI RAATTY 3 cut(s) 82, 268, 304
AgsI TTSAA 4 cut(s) 13, 268, 396, 449
AhlI ACTAGT 1 cut(s) 134
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 3 cut(s) 82, 268, 304
AsuHPI GGTGA 2 cut(s) 43, 364
AsuII TTCGAA 1 cut(s) 140
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 406
BclI TGATCA 1 cut(s) 376
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 333
BmsI GCATC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 140
BsaJI CCNNGG 3 cut(s) 179, 335, 359
BsaWI WCCGGW 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 179, 335, 359
BseGI GGATG 4 cut(s) 345, 379, 417, 446
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 350
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 1 cut(s) 184
Bsp119I TTCGAA 1 cut(s) 140
Bsp143I GATC 1 cut(s) 376
BspACI CCGC 1 cut(s) 409
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 333
BspMI ACCTGC 1 cut(s) 242
BspT104I TTCGAA 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 231
BssECI CCNNGG 3 cut(s) 179, 335, 359
BssMI GATC 1 cut(s) 376
BssT1I CCWWGG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 61, 98
BstBI TTCGAA 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 323
BstF5I GGATG 4 cut(s) 345, 379, 417, 446
BstKTI GATC 1 cut(s) 379
BstMBI GATC 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 4 cut(s) 345, 379, 417, 446
BtsIMutI CAGTG 1 cut(s) 103
BveI ACCTGC 1 cut(s) 242
CviAII CATG 2 cut(s) 23, 383
CviJI RGCY 4 cut(s) 184, 261, 322, 416
CviKI_1 RGCY 4 cut(s) 184, 261, 322, 416
DdeI CTNAG 1 cut(s) 323
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 184
EcoRI GAATTC 2 cut(s) 268, 304
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 2 cut(s) 26, 386
FatI CATG 2 cut(s) 22, 382
FauNDI CATATG 1 cut(s) 205
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 3 cut(s) 352, 386, 424
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 350
Hin1II CATG 2 cut(s) 26, 386
HinfI GANTC 3 cut(s) 19, 355, 392
HpaII CCGG 1 cut(s) 350
HphI GGTGA 2 cut(s) 43, 364
Hpy188I TCNGA 2 cut(s) 336, 360
Hpy188III TCNNGA 1 cut(s) 389
HpyCH4III ACNGT 2 cut(s) 61, 98
HpyCH4V TGCA 3 cut(s) 203, 251, 403
HpyF3I CTNAG 1 cut(s) 323
Hsp92II CATG 2 cut(s) 26, 386
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 1 cut(s) 376
LpnPI CCDG 3 cut(s) 237, 363, 423
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 55, 342
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MfeI CAATTG 1 cut(s) 195
MluCI AATT 7 cut(s) 82, 195, 268, 280, 291, 304, 429
MnlI CCTC 3 cut(s) 295, 330, 354
MseI TTAA 2 cut(s) 80, 93
MspI CCGG 1 cut(s) 350
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 19
NdeI CATATG 1 cut(s) 205
NdeII GATC 1 cut(s) 376
NlaIII CATG 2 cut(s) 26, 386
NlaIV GGNNCC 1 cut(s) 333
NmuCI GTSAC 2 cut(s) 55, 342
NspV TTCGAA 1 cut(s) 140
PceI AGGCCT 1 cut(s) 184
PcsI WCGNNNNNNNCGW 1 cut(s) 269
PctI GAATGC 1 cut(s) 19
PfeI GAWTC 3 cut(s) 19, 355, 392
PkrI GCNGC 1 cut(s) 202
PsiI TTATAA 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 80, 93
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 376
SetI ASST 4 cut(s) 161, 256, 263, 333
SfaNI GCATC 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 140
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 7 cut(s) 82, 195, 268, 280, 291, 304, 429
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 1 cut(s) 409
SspI AATATT 1 cut(s) 368
SspMI CTAG 1 cut(s) 135
StuI AGGCCT 1 cut(s) 184
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 61, 98
TaqI TCGA 2 cut(s) 140, 272
TasI AATT 7 cut(s) 82, 195, 268, 280, 291, 304, 429
TfiI GAWTC 3 cut(s) 19, 355, 392
Tru1I TTAA 2 cut(s) 80, 93
Tru9I TTAA 2 cut(s) 80, 93
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 2 cut(s) 55, 342
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 2 cut(s) 55, 342
TspDTI ATGAA 3 cut(s) 17, 66, 125
TspRI CASTG 1 cut(s) 103
XapI RAATTY 3 cut(s) 82, 268, 304
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.