pycom04g13040

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0001977
Physical Location & Seq
Forward (+)
16066741 .. 16067154
414 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13040.1

Sequence Viewer

Length: 414 bp
ATGTTTGAAGGTAAGCCTCGGAAATCCGTGTCTTTTTCGACGAACTTCTCGTTTTCTATTTCCACCGGCGGTGGGGATGGATTGGCGTTTGTAGTGGTTCCAAAGGGTTTTAATCTTAGCCTATTTGGTAACGGCTCTTTTGGGCTTTCTCTGGGAAATGTTAAAAGTAAATTCAAAATTGCTGCTGTCAAATTTGATGCATTGAGTGATGGAAATGTTCATGTTGGAATTGATGTGGGTAGTACTGTTTCTGTTAAAGTAAGCAATGTTTCTGCTAAGAATTTGGATCCAAGTAATGGGAATAAAACGCAGGCTTGGATCGATTACGAAGCGGGTTCGAATCAATTTGAAGTTAGGCTGAGTAAATTCGGTGGTTCGAAGCCGGTTGATCCATCTGCTGTGGTATCCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

138

Amino Acids

14.26

Weight (kDa)

9.26

Isoelectric Point (pI)

2.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 5 - 132 5.1e-26 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 296
AciI CCGC 2 cut(s) 69, 332
AclWI GGATC 4 cut(s) 281, 294, 326, 383
AcsI RAATTY 4 cut(s) 170, 191, 280, 365
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 72, 296
AgsI TTSAA 3 cut(s) 8, 175, 350
AlwI GGATC 4 cut(s) 281, 294, 326, 383
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 4 cut(s) 170, 191, 280, 365
AsuII TTCGAA 2 cut(s) 338, 377
BamHI GGATCC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 169
BccI CCATC 3 cut(s) 71, 203, 400
BceAI ACGGC 1 cut(s) 148
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmcAI AGTACT 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 99, 288
BmsI GCATC 1 cut(s) 187
Bpu14I TTCGAA 2 cut(s) 338, 377
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 296
Bse118I RCCGGY 2 cut(s) 65, 382
Bse3DI GCAATG 1 cut(s) 271
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 72, 296
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 321
BsiSI CCGG 2 cut(s) 66, 383
BslI CCNNNNNNNGG 2 cut(s) 72, 296
Bsp119I TTCGAA 2 cut(s) 338, 377
Bsp143I GATC 3 cut(s) 286, 318, 388
BspACI CCGC 2 cut(s) 69, 332
BspCNI CTCAG 1 cut(s) 351
BspDI ATCGAT 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 99, 288
BspPI GGATC 4 cut(s) 281, 294, 326, 383
BspT104I TTCGAA 2 cut(s) 338, 377
BsrDI GCAATG 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 65, 382
BssAI RCCGGY 2 cut(s) 65, 382
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 286, 318, 388
Bst4CI ACNGT 1 cut(s) 247
BstBI TTCGAA 2 cut(s) 338, 377
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 3 cut(s) 116, 276, 359
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 3 cut(s) 289, 321, 391
BstMBI GATC 3 cut(s) 286, 318, 388
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 321
BsuTUI ATCGAT 1 cut(s) 321
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 312
Cfr10I RCCGGY 2 cut(s) 65, 382
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 243
CviAII CATG 1 cut(s) 221
CviJI RGCY 7 cut(s) 16, 120, 135, 145, 314, 358, 382
CviKI_1 RGCY 7 cut(s) 16, 120, 135, 145, 314, 358, 382
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 3 cut(s) 116, 276, 359
DpnI GATC 3 cut(s) 288, 320, 390
DpnII GATC 3 cut(s) 286, 318, 388
EcoT22I ATGCAT 1 cut(s) 202
FaeI CATG 1 cut(s) 224
FaiI YATR 1 cut(s) 222
FatI CATG 1 cut(s) 220
FauI CCCGC 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
HapII CCGG 2 cut(s) 66, 383
Hin1II CATG 1 cut(s) 224
HinfI GANTC 1 cut(s) 340
HpaII CCGG 2 cut(s) 66, 383
Hpy188I TCNGA 2 cut(s) 21, 409
Hpy99I CGWCG 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 1 cut(s) 200
HpyF3I CTNAG 3 cut(s) 116, 276, 359
Hsp92II CATG 1 cut(s) 224
Kzo9I GATC 3 cut(s) 286, 318, 388
LpnPI CCDG 4 cut(s) 79, 137, 296, 396
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 128
MalI GATC 3 cut(s) 288, 320, 390
MboI GATC 3 cut(s) 286, 318, 388
MflI RGATCY 1 cut(s) 286
MluCI AATT 7 cut(s) 170, 177, 191, 228, 280, 344, 365
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 1 cut(s) 27
Mph1103I ATGCAT 1 cut(s) 202
MseI TTAA 3 cut(s) 111, 162, 255
MspI CCGG 2 cut(s) 66, 383
NdeII GATC 3 cut(s) 286, 318, 388
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 99, 288
NsiI ATGCAT 1 cut(s) 202
NspV TTCGAA 2 cut(s) 338, 377
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 1 cut(s) 340
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 99, 288
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SaqAI TTAA 3 cut(s) 111, 162, 255
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 3 cut(s) 286, 318, 388
ScaI AGTACT 1 cut(s) 244
SetI ASST 1 cut(s) 13
SfaNI GCATC 1 cut(s) 187
SfuI TTCGAA 2 cut(s) 338, 377
SgrAI CRCCGGYG 1 cut(s) 65
Sse9I AATT 7 cut(s) 170, 177, 191, 228, 280, 344, 365
SsiI CCGC 2 cut(s) 69, 332
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 4 cut(s) 38, 321, 338, 377
TasI AATT 7 cut(s) 170, 177, 191, 228, 280, 344, 365
TatI WGTACW 1 cut(s) 242
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 3 cut(s) 111, 162, 255
Tru9I TTAA 3 cut(s) 111, 162, 255
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 296
XapI RAATTY 4 cut(s) 170, 191, 280, 365
ZrmI AGTACT 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.