Rmu_sc0003337.1_g000012

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003337.1
OG0001977
Physical Location & Seq
Forward (+)
31812 .. 32237
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003337.1_g000012.1.cds

Sequence Viewer

Length: 426 bp
atgatgtggaaagataaggatgtgtatgtagggataagctcgtcgaattcgaatggcagttcctcgcagatttgtagtgtgtattcttggagttttaggatgagaaaggttccgaggatgcattctcttccggtgaatccgaggggttatttggatgatcagcatggtgaaaatcggggtctacataagaggatggcttgtccattgtcaattcttgctgggattatattcatgactgggtgtggagctctggtttcatttgtcatgctgtttttgtgggctataattgttaacaggcacacggttttccttgctgaagtgctcccagatgagtttccggtgaagcctaatcctacggatttcaggtatgagaagatcagtgtagttgtagaggaagatgcagatgcagatggtgttaagaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

141

Amino Acids

15.9

Weight (kDa)

7.75

Isoelectric Point (pI)

27.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 181
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 336
AluBI AGCT 2 cut(s) 39, 248
AluI AGCT 2 cut(s) 39, 248
Alw21I GWGCWC 2 cut(s) 250, 324
ApoI RAATTY 1 cut(s) 46
AsuHPI GGTGA 3 cut(s) 145, 179, 352
AsuII TTCGAA 1 cut(s) 50
BanII GRGCYC 1 cut(s) 250
Bbv12I GWGCWC 2 cut(s) 250, 324
BccI CCATC 2 cut(s) 187, 404
BclI TGATCA 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 111
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 3 cut(s) 108, 388, 394
BmuI ACTGGG 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 113, 140
BsaWI WCCGGW 2 cut(s) 130, 337
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bse1I ACTGG 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 113, 140
BseGI GGATG 5 cut(s) 25, 105, 123, 160, 198
BseNI ACTGG 1 cut(s) 241
BseYI CCCAGC 1 cut(s) 218
BsiHKAI GWGCWC 2 cut(s) 250, 324
BsiSI CCGG 2 cut(s) 131, 338
BsmI GAATGC 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 250, 324
Bsp143I GATC 2 cut(s) 157, 375
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 50
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 113, 140
BssMI GATC 2 cut(s) 157, 375
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 50
BstF5I GGATG 5 cut(s) 25, 105, 123, 160, 198
BstKTI GATC 2 cut(s) 160, 378
BstMBI GATC 2 cut(s) 157, 375
BtsCI GGATG 5 cut(s) 25, 105, 123, 160, 198
BtsIMutI CAGTG 1 cut(s) 385
CciI TCATGA 1 cut(s) 231
CviAII CATG 3 cut(s) 164, 232, 265
CviJI RGCY 5 cut(s) 39, 197, 248, 281, 346
CviKI_1 RGCY 5 cut(s) 39, 197, 248, 281, 346
DpnI GATC 2 cut(s) 159, 377
DpnII GATC 2 cut(s) 157, 375
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 250
FaeI CATG 3 cut(s) 167, 235, 268
FaiI YATR 8 cut(s) 27, 165, 186, 227, 233, 266, 284, 369
FatI CATG 3 cut(s) 163, 231, 264
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 1 cut(s) 181
FokI GGATG 5 cut(s) 32, 112, 130, 167, 205
FriOI GRGCYC 1 cut(s) 250
GsaI CCCAGC 1 cut(s) 222
HapII CCGG 2 cut(s) 131, 338
Hin1II CATG 3 cut(s) 167, 235, 268
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 136
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 2 cut(s) 131, 338
HphI GGTGA 3 cut(s) 145, 179, 352
Hpy166II GTNNAC 2 cut(s) 182, 292
Hpy188I TCNGA 2 cut(s) 114, 141
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 2 cut(s) 182, 292
Hpy99I CGWCG 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 121, 401, 407
Hsp92II CATG 3 cut(s) 167, 235, 268
Ksp22I TGATCA 1 cut(s) 157
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 157, 375
LmnI GCTCC 2 cut(s) 245, 327
LpnPI CCDG 8 cut(s) 144, 204, 222, 236, 280, 339, 349, 351
LweI GCATC 3 cut(s) 108, 388, 394
MalI GATC 2 cut(s) 159, 377
MboI GATC 2 cut(s) 157, 375
MboII GAAGA 3 cut(s) 119, 385, 407
MhlI GDGCHC 2 cut(s) 250, 324
MluCI AATT 3 cut(s) 46, 210, 285
MnlI CCTC 5 cut(s) 73, 108, 135, 183, 385
Mph1103I ATGCAT 1 cut(s) 123
MseI TTAA 2 cut(s) 291, 417
MspI CCGG 2 cut(s) 131, 338
Mva1269I GAATGC 1 cut(s) 121
NdeII GATC 2 cut(s) 157, 375
NlaIII CATG 3 cut(s) 167, 235, 268
NlaIV GGNNCC 1 cut(s) 111
NsiI ATGCAT 1 cut(s) 123
NspV TTCGAA 1 cut(s) 50
PagI TCATGA 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 111
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 2 cut(s) 291, 417
Sau3AI GATC 2 cut(s) 157, 375
SduI GDGCHC 2 cut(s) 250, 324
SetI ASST 4 cut(s) 41, 111, 250, 368
SfaNI GCATC 3 cut(s) 108, 388, 394
SfuI TTCGAA 1 cut(s) 50
Sse9I AATT 3 cut(s) 46, 210, 285
SstI GAGCTC 1 cut(s) 250
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 44, 50
TasI AATT 3 cut(s) 46, 210, 285
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 2 cut(s) 291, 417
Tru9I TTAA 2 cut(s) 291, 417
TscAI CASTG 1 cut(s) 385
TspDTI ATGAA 2 cut(s) 220, 246
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 385
XapI RAATTY 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 181
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.