RchiOBHm_Chr3g0464131

Belongs to the leguminous lectin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001977
Physical Location & Seq
Reverse (-)
11322201 .. 11323999
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43041

Sequence Viewer

Length: 1035 bp
ATGGTCTCATTATCCATTTCCACTCACTTAGCCGCTTTTTCCCTGCTCATTTTCACCCTCAGAGCCTCAGCTGCAGACTCAAATTCCTCATTTTCTTTCACTAAGTTTGGTAAAGATCCAAACTTTGAGTCCAATATTGCTCTGTATGGAGATGCCAAGATTGCTAATGGTGCAGTTCAGCTCACTAGTTCTGGGCGAGTCATGTACAAGAAACCCCTCAAGCTTGGTGAAGGTAAGCCTCAGAAATCAGTGTCTTTTTCCAGTCACTTCACTCTGTCTATGTCCAAAGAAAATGGGGATGGTTTGGCCTTTGTTATAGTTCCAAGTGGTTTCAATCTTAGCCTGTTTGGTAATAGCTCTTTTGGGCTTGAAATGGGGTATGGGAAAAGTAAATTGAAGGTTGTTGCAGTTAAGTTGAAGTATGATTACTTGGTTGGTAAGGTCCATGTGGGGATTGATGTGGGTAGTTCTGTATCAGCTAGAGTTAACAATGCTTCAGCTATCAAATTGAATCTAACTAGTGGTGATAGAACAAATGCTTGGATTGATTATGAAGCGGGTTCGAAAAGAGTTGAAGTGAGATTGAGTCAATTGGGTGGTTTAAGGCCAGCTGATCCTTTGCTGTGGTACCCAATTGACTTGTCGAAATTGTGGGGAGATGAGAAAGTGTTTGTAGGCTTAAGCGCGCAGAATAGGAACTCTTCTCAAACTTGTTCCATATATTCTTGGAGCTTCGAGCAAAGGCATGTTCCGGACTGGATGCATTCAGAGCCACTAGATCCTAAGACCTTATCTAAGAGCTCGAAACCGGTGACAGTTGAGAAGAGAAAGGATTGTGTATTGAGGGCTGTTGCTGCAATGGTTCTCGGAGTTGCTTGTGGAGCATTGGCATCATACATTGTGTTGTATTTGTGGAGAGTCTTTGGTAATAGGCGTCCGGTGGTGCCAGAAGAGTATGCAATGCAGCCTCAACAATTCGAGTACAAGAAAATGAAGGTAGTGGTAGATAAATCCATCGAAGATGGAAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB

Protein Analysis

344

Amino Acids

37.78

Weight (kDa)

9.49

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 29 - 258 7.3e-49 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 627
AccB1I GGYRCC 2 cut(s) 627, 943
AccII CGCG 1 cut(s) 686
AccIII TCCGGA 1 cut(s) 751
AciI CCGC 2 cut(s) 33, 557
AclWI GGATC 3 cut(s) 110, 608, 773
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 934
AfaI GTAC 3 cut(s) 206, 629, 983
AflII CTTAAG 1 cut(s) 679
AgeI ACCGGT 1 cut(s) 808
AgsI TTSAA 6 cut(s) 334, 371, 397, 418, 511, 575
AhlI ACTAGT 2 cut(s) 185, 518
AjuI GAANNNNNNNTTGG 2 cut(s) 523, 555
AluBI AGCT 9 cut(s) 71, 181, 223, 357, 479, 500, 611, 732, 801
AluI AGCT 9 cut(s) 71, 181, 223, 357, 479, 500, 611, 732, 801
Alw21I GWGCWC 1 cut(s) 803
Alw26I GTCTC 1 cut(s) 10
AlwI GGATC 3 cut(s) 110, 608, 773
Aor13HI TCCGGA 1 cut(s) 751
AoxI GGCC 2 cut(s) 306, 605
ApeKI GCWGC 3 cut(s) 71, 854, 964
ApoI RAATTY 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AsiGI ACCGGT 1 cut(s) 808
Asp718I GGTACC 1 cut(s) 627
AspLEI GCGC 2 cut(s) 686, 688
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 4 cut(s) 46, 239, 536, 823
AsuII TTCGAA 1 cut(s) 563
AvaII GGWCC 1 cut(s) 442
BanI GGYRCC 2 cut(s) 627, 943
BanII GRGCYC 1 cut(s) 803
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
Bbv12I GWGCWC 1 cut(s) 803
BbvCI CCTCAGC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 58, 841, 976
BccI CCATC 3 cut(s) 293, 1016, 1022
BcoDI GTCTC 1 cut(s) 10
BcuI ACTAGT 2 cut(s) 185, 518
BfaI CTAG 4 cut(s) 186, 480, 519, 776
BfmI CTRYAG 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 679
BisI GCNGC 4 cut(s) 33, 72, 855, 965
BlsI GCNGC 4 cut(s) 34, 73, 856, 966
Bme18I GGWCC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 442
BmiI GGNNCC 2 cut(s) 629, 945
BmsI GCATC 3 cut(s) 142, 750, 899
Bpu10I CCTNAGC 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 934
BsaI GGTCTC 1 cut(s) 10
BsaWI WCCGGW 3 cut(s) 751, 808, 937
Bse118I RCCGGY 1 cut(s) 808
Bse1I ACTGG 2 cut(s) 261, 761
Bse3DI GCAATG 2 cut(s) 864, 966
BseAI TCCGGA 1 cut(s) 751
BseGI GGATG 2 cut(s) 304, 765
BseMI GCAATG 2 cut(s) 864, 966
BseMII CTCAG 3 cut(s) 73, 81, 254
BseNI ACTGG 2 cut(s) 261, 761
BsePI GCGCGC 1 cut(s) 684
BseXI GCAGC 3 cut(s) 58, 841, 976
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 686
BshFI GGCC 2 cut(s) 308, 607
BshNI GGYRCC 2 cut(s) 627, 943
BshTI ACCGGT 1 cut(s) 808
BsiHKAI GWGCWC 1 cut(s) 803
BsiSI CCGG 3 cut(s) 752, 809, 938
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 763
BsnI GGCC 2 cut(s) 308, 607
Bso31I GGTCTC 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 803
Bsp13I TCCGGA 1 cut(s) 751
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 3 cut(s) 115, 613, 778
BspACI CCGC 2 cut(s) 33, 557
BspANI GGCC 2 cut(s) 308, 607
BspCNI CTCAG 3 cut(s) 72, 80, 253
BspEI TCCGGA 1 cut(s) 751
BspFNI CGCG 1 cut(s) 686
BspLI GGNNCC 2 cut(s) 629, 945
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 3 cut(s) 110, 608, 773
BspT104I TTCGAA 1 cut(s) 563
BspT107I GGYRCC 2 cut(s) 627, 943
BspTI CTTAAG 1 cut(s) 679
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 2 cut(s) 864, 966
BsrFI RCCGGY 1 cut(s) 808
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 2 cut(s) 261, 761
BssAI RCCGGY 1 cut(s) 808
BssHII GCGCGC 1 cut(s) 684
BssMI GATC 3 cut(s) 115, 613, 778
BssNI GRCGYC 1 cut(s) 934
Bst4CI ACNGT 1 cut(s) 817
Bst6I CTCTTC 3 cut(s) 706, 818, 945
BstACI GRCGYC 1 cut(s) 934
BstAFI CTTAAG 1 cut(s) 679
BstAUI TGTACA 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 609, 686
BstDEI CTNAG 8 cut(s) 28, 59, 67, 102, 240, 338, 783, 795
BstF5I GGATG 2 cut(s) 304, 765
BstFNI CGCG 1 cut(s) 686
BstHHI GCGC 2 cut(s) 686, 688
BstKTI GATC 3 cut(s) 118, 616, 781
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 3 cut(s) 115, 613, 778
BstMWI GCNNNNNNNGC 6 cut(s) 71, 161, 170, 769, 854, 881
BstNSI RCATGY 1 cut(s) 749
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 686
BstV1I GCAGC 3 cut(s) 58, 841, 976
BstX2I RGATCY 2 cut(s) 115, 778
BstYI RGATCY 2 cut(s) 115, 778
BsuRI GGCC 2 cut(s) 308, 607
BtsCI GGATG 2 cut(s) 304, 765
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 609, 686
CfoI GCGC 2 cut(s) 686, 688
Cfr10I RCCGGY 1 cut(s) 808
Cfr13I GGNCC 1 cut(s) 442
CseI GACGC 1 cut(s) 923
Csp6I GTAC 3 cut(s) 205, 628, 982
CspAI ACCGGT 1 cut(s) 808
CviAII CATG 3 cut(s) 202, 446, 746
CviQI GTAC 3 cut(s) 205, 628, 982
DdeI CTNAG 8 cut(s) 28, 59, 67, 102, 240, 338, 783, 795
DpnI GATC 3 cut(s) 117, 615, 780
DpnII GATC 3 cut(s) 115, 613, 778
Eam1104I CTCTTC 3 cut(s) 706, 818, 945
EarI CTCTTC 3 cut(s) 706, 818, 945
Ecl136II GAGCTC 1 cut(s) 801
Eco24I GRGCYC 1 cut(s) 803
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 801
Eco57I CTGAAG 1 cut(s) 480
EcoICRI GAGCTC 1 cut(s) 801
EcoT22I ATGCAT 1 cut(s) 765
EcoT38I GRGCYC 1 cut(s) 803
FaeI CATG 3 cut(s) 205, 449, 749
FatI CATG 3 cut(s) 201, 445, 745
FauI CCCGC 1 cut(s) 550
Fnu4HI GCNGC 4 cut(s) 33, 72, 855, 965
FokI GGATG 2 cut(s) 311, 772
FriOI GRGCYC 1 cut(s) 803
Fsp4HI GCNGC 4 cut(s) 33, 72, 855, 965
FspBI CTAG 4 cut(s) 186, 480, 519, 776
GlaI GCGC 2 cut(s) 685, 687
GluI GCNGC 4 cut(s) 33, 72, 855, 965
HaeIII GGCC 2 cut(s) 308, 607
HapII CCGG 3 cut(s) 752, 809, 938
HgaI GACGC 1 cut(s) 923
HhaI GCGC 2 cut(s) 686, 688
Hin1I GRCGYC 1 cut(s) 934
Hin1II CATG 3 cut(s) 205, 449, 749
Hin6I GCGC 2 cut(s) 684, 686
HinP1I GCGC 2 cut(s) 684, 686
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 6 cut(s) 77, 128, 198, 511, 586, 918
HpaI GTTAAC 1 cut(s) 487
HpaII CCGG 3 cut(s) 752, 809, 938
HphI GGTGA 4 cut(s) 46, 239, 536, 823
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 4 cut(s) 62, 243, 769, 869
Hpy188III TCNNGA 1 cut(s) 752
Hpy8I GTNNAC 1 cut(s) 487
HpyAV CCTTC 3 cut(s) 224, 391, 988
HpyCH4III ACNGT 1 cut(s) 817
HpyCH4V TGCA 7 cut(s) 74, 173, 407, 763, 857, 959, 964
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 161, 170, 769, 854, 881
HpyF3I CTNAG 8 cut(s) 28, 59, 67, 102, 240, 338, 783, 795
Hsp92I GRCGYC 1 cut(s) 934
Hsp92II CATG 3 cut(s) 205, 449, 749
HspAI GCGC 2 cut(s) 684, 686
Kpn2I TCCGGA 1 cut(s) 751
KpnI GGTACC 1 cut(s) 631
KspAI GTTAAC 1 cut(s) 487
Kzo9I GATC 3 cut(s) 115, 613, 778
LmnI GCTCC 2 cut(s) 729, 881
Lsp1109I GCAGC 3 cut(s) 58, 841, 976
LweI GCATC 3 cut(s) 142, 750, 899
MaeI CTAG 4 cut(s) 186, 480, 519, 776
MaeIII GTNAC 2 cut(s) 263, 811
MalI GATC 3 cut(s) 117, 615, 780
MboI GATC 3 cut(s) 115, 613, 778
MboII GAAGA 4 cut(s) 693, 835, 962, 1031
MfeI CAATTG 2 cut(s) 590, 633
MflI RGATCY 2 cut(s) 115, 778
MhlI GDGCHC 1 cut(s) 803
MluCI AATT 7 cut(s) 82, 392, 506, 590, 633, 647, 974
MlyI GAGTC 5 cut(s) 71, 137, 207, 595, 927
MnlI CCTC 7 cut(s) 68, 76, 97, 227, 249, 837, 978
Mph1103I ATGCAT 1 cut(s) 765
MroI TCCGGA 1 cut(s) 751
MseI TTAA 4 cut(s) 411, 486, 602, 680
MspA1I CMGCKG 2 cut(s) 71, 611
MspCI CTTAAG 1 cut(s) 679
MspI CCGG 3 cut(s) 752, 809, 938
MunI CAATTG 2 cut(s) 590, 633
Mva1269I GAATGC 1 cut(s) 763
MvnI CGCG 1 cut(s) 686
MwoI GCNNNNNNNGC 6 cut(s) 71, 161, 170, 769, 854, 881
NdeII GATC 3 cut(s) 115, 613, 778
NlaIII CATG 3 cut(s) 205, 449, 749
NlaIV GGNNCC 2 cut(s) 629, 945
NmuCI GTSAC 2 cut(s) 263, 811
NsiI ATGCAT 1 cut(s) 765
NspI RCATGY 1 cut(s) 749
NspV TTCGAA 1 cut(s) 563
PauI GCGCGC 1 cut(s) 684
PctI GAATGC 1 cut(s) 763
PfeI GAWTC 1 cut(s) 511
PinAI ACCGGT 1 cut(s) 808
PkrI GCNGC 4 cut(s) 34, 73, 856, 966
PleI GAGTC 5 cut(s) 71, 136, 206, 594, 926
PpsI GAGTC 5 cut(s) 71, 136, 206, 594, 926
Psp124BI GAGCTC 1 cut(s) 803
PspN4I GGNNCC 2 cut(s) 629, 945
PspPI GGNCC 1 cut(s) 442
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 2 cut(s) 115, 778
PteI GCGCGC 1 cut(s) 684
PvuII CAGCTG 2 cut(s) 71, 611
RsaI GTAC 3 cut(s) 206, 629, 983
RsaNI GTAC 3 cut(s) 205, 628, 982
SacI GAGCTC 1 cut(s) 803
SaqAI TTAA 4 cut(s) 411, 486, 602, 680
SatI GCNGC 4 cut(s) 33, 72, 855, 965
Sau3AI GATC 3 cut(s) 115, 613, 778
Sau96I GGNCC 1 cut(s) 442
SchI GAGTC 5 cut(s) 71, 137, 207, 595, 927
SduI GDGCHC 1 cut(s) 803
SfaNI GCATC 3 cut(s) 142, 750, 899
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 563
SinI GGWCC 1 cut(s) 442
SmlI CTYRAG 2 cut(s) 218, 679
SmoI CTYRAG 2 cut(s) 218, 679
SpeI ACTAGT 2 cut(s) 185, 518
Sse9I AATT 7 cut(s) 82, 392, 506, 590, 633, 647, 974
SsiI CCGC 2 cut(s) 33, 557
SspI AATATT 1 cut(s) 136
SspMI CTAG 4 cut(s) 186, 480, 519, 776
SstI GAGCTC 1 cut(s) 803
TaaI ACNGT 1 cut(s) 817
TaqI TCGA 6 cut(s) 563, 644, 735, 803, 978, 1017
TasI AATT 7 cut(s) 82, 392, 506, 590, 633, 647, 974
TatI WGTACW 2 cut(s) 204, 981
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 4 cut(s) 411, 486, 602, 680
Tru9I TTAA 4 cut(s) 411, 486, 602, 680
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 2 cut(s) 263, 811
TseI GCWGC 3 cut(s) 71, 854, 964
Tsp45I GTSAC 2 cut(s) 263, 811
TspDTI ATGAA 2 cut(s) 567, 1007
TspRI CASTG 1 cut(s) 255
Vha464I CTTAAG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 442
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 749
XspI CTAG 4 cut(s) 186, 480, 519, 776
Zsp2I ATGCAT 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.