AT3G09860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002165
Physical Location & Seq
Forward (+)
3025993 .. 3027250
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09860.1

Sequence Viewer

Length: 297 bp
ATGGAGAAGTACTTTGGAAATGCGTACAGGGGAGATCCAGGAGTGCCACATGCAGATGCAGATCGTTTCGTGAATATATGGATTGGTTCTGCTGCTTTCTCCGTTCTTACCTGGGTTAATCCTTACATGTGGCAGCTCTCTAACCAGTTCAATTACCATGACAAGTGGATGCTGTTTGAGCAGTACCACTGGAAAAAAGCAAGGGCAAAGAAGCAACCTTATGAATTCAAGTGGAATAAGATACCCAAAGAAGTCAGGGACTCGTACTATTACAACTGGCCAGTCTACTTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

12.1

Weight (kDa)

9.27

Isoelectric Point (pI)

26.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 285
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 4 cut(s) 11, 26, 185, 266
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 2 cut(s) 151, 229
AjnI CCWGG 2 cut(s) 37, 110
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
AlwI GGATC 1 cut(s) 29
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 92, 133
ApoI RAATTY 1 cut(s) 224
BalI TGGCCA 1 cut(s) 280
BbvI GCAGC 2 cut(s) 79, 145
BciT130I CCWGG 2 cut(s) 39, 112
BisI GCNGC 2 cut(s) 93, 134
BlsI GCNGC 2 cut(s) 94, 135
BmcAI AGTACT 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 39, 112
BmrFI CCNGG 2 cut(s) 39, 112
BmsI GCATC 2 cut(s) 46, 159
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 111
Bse1I ACTGG 4 cut(s) 145, 194, 281, 281
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 2 cut(s) 39, 112
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 60
BseNI ACTGG 4 cut(s) 145, 194, 281, 281
BseXI GCAGC 2 cut(s) 79, 145
BshFI GGCC 1 cut(s) 280
BslFI GGGAC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 34, 61
BspANI GGCC 1 cut(s) 280
BspPI GGATC 1 cut(s) 29
BsrI ACTGG 4 cut(s) 145, 194, 281, 281
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 34, 61
Bst2UI CCWGG 2 cut(s) 39, 112
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 2 cut(s) 37, 64
BstMBI GATC 2 cut(s) 34, 61
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 2 cut(s) 39, 112
BstNSI RCATGY 2 cut(s) 53, 130
BstSCI CCNGG 2 cut(s) 37, 110
BstV1I GCAGC 2 cut(s) 79, 145
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 187
Csp6I GTAC 4 cut(s) 10, 25, 184, 265
CviAII CATG 3 cut(s) 50, 127, 158
CviJI RGCY 2 cut(s) 136, 280
CviKI_1 RGCY 2 cut(s) 136, 280
CviQI GTAC 4 cut(s) 10, 25, 184, 265
DpnI GATC 2 cut(s) 36, 63
DpnII GATC 2 cut(s) 34, 61
EaeI YGGCCR 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 37, 110
FaeI CATG 3 cut(s) 53, 130, 161
FaiI YATR 7 cut(s) 51, 77, 79, 128, 159, 222, 295
FaqI GGGAC 1 cut(s) 272
FatI CATG 3 cut(s) 49, 126, 157
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 93, 134
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 93, 134
GluI GCNGC 2 cut(s) 93, 134
HaeIII GGCC 1 cut(s) 280
Hin1II CATG 3 cut(s) 53, 130, 161
HinfI GANTC 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 286
HpyCH4V TGCA 2 cut(s) 53, 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
Hsp92II CATG 3 cut(s) 53, 130, 161
Kzo9I GATC 2 cut(s) 34, 61
LpnPI CCDG 9 cut(s) 13, 24, 51, 97, 124, 158, 175, 241, 262
Lsp1109I GCAGC 2 cut(s) 79, 145
LweI GCATC 2 cut(s) 46, 159
MalI GATC 2 cut(s) 36, 63
MboI GATC 2 cut(s) 34, 61
MflI RGATCY 1 cut(s) 34
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 2 cut(s) 151, 224
MluNI TGGCCA 1 cut(s) 280
MlyI GAGTC 1 cut(s) 254
Mox20I TGGCCA 1 cut(s) 280
MscI TGGCCA 1 cut(s) 280
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 280
MspR9I CCNGG 2 cut(s) 39, 112
MvaI CCWGG 2 cut(s) 39, 112
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 2 cut(s) 34, 61
NlaIII CATG 3 cut(s) 53, 130, 161
NspI RCATGY 2 cut(s) 53, 130
PciI ACATGT 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 37
PkrI GCNGC 2 cut(s) 94, 135
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PscI ACATGT 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 37, 110
PspGI CCWGG 2 cut(s) 37, 110
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 4 cut(s) 11, 26, 185, 266
RsaNI GTAC 4 cut(s) 10, 25, 184, 265
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 93, 134
Sau3AI GATC 2 cut(s) 34, 61
ScaI AGTACT 1 cut(s) 11
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 2 cut(s) 39, 112
SetI ASST 3 cut(s) 113, 138, 220
SfaNI GCATC 2 cut(s) 46, 159
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 2 cut(s) 151, 224
StyD4I CCNGG 2 cut(s) 37, 110
TasI AATT 2 cut(s) 151, 224
TatI WGTACW 1 cut(s) 9
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 194
TseI GCWGC 2 cut(s) 92, 133
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 194
XapI RAATTY 1 cut(s) 224
XceI RCATGY 2 cut(s) 53, 130
XmiI GTMKAC 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.