Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002091.1

Orthogroup ID

OG0002165

Physical Location & Seq

Genomic Coordinates Forward (+)

48466 .. 49641

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002091.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgttttcaacatttggttatcctacatctggcgatgctattagctatagtcagaaccctattcaaagtcaagttgctgctcaaagtgaacccaaaatcacaaagaaagctaaaagagccaagaatttctccattcaagaagacaaccttcttgtgtctgcctggctcaatactacccttgatccagcaataggaaatgatcaaaaaggtgttgcttattggaaaagaatttgggagtatttctatgctgagaagaactttgaactagagtgtgatcgtaatcagggttctctcatgcatcgctggtctggaattcaactggatgtgaataaattttgtggctattatgctgaaattgaaaggacaagagcaagtgttccacccaaaatggaacttgcaactcatgctacggttcctgctacttcatctcctatcactccatctgctagcccagatacaatagatttagctgatggcaatgttgaaggcaatgagtctccatgcttagagaggcctataggcaaaaaggctgccaagaccttggcaaggaaggcaaaagctaaagagaaagtggaagcagcccaatctgaattaggagactattatgctctgaaagttgaacatgctcgtaaggaggatgagcaatttcaactgatctggtcaacagtctcttttctgcgcaggcgtgccagcacagttcgggtgcggtcgtcgggggtgtcccttgacctgacttctttcaggcgattgtggacgaggagagcaccaaccttgtcgtgggattctttatgcctcatggtgaggacttttgctgagcttcttgaaaatcacaatcgatactcgatgttgaagaccaagcagagcgagaaccactgggaagtgaggagaacttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

298

Amino Acids

33.91

Weight (kDa)

9.17

Isoelectric Point (pI)

59.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09860
fragaria_vesca	FvH4_6g16300
malus_domestica	MD04G1093900.v1.1 MD12G1113600.v1.1
prunus_persica	Prupe.6G232500_v2.0.a1
pyrus_communis	pycom12g11250
rosa_chinensis	RchiOBHm_Chr2g0105031 RchiOBHm_Chr3g0470161 RchiOBHm_Chr7g0231991
rosa_laevigata	RLG00000014977
rosa_multiflora	Rmu_sc0001351.1_g000017 Rmu_sc0002091.1_g000013 Rmu_sc0010369.1_g000006 Rmu_sc0011511.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264040 Rroxscaffold_7G00161710
rosa_rugosa	Rorug01G0261200 Rorug03G0107500
rosa_samantha	Rh1AG240800 Rh2BG234200 Rh2BG234300 Rh2CG180700 Rh3AG156500 Rh3BG134000 Rh3BG180600 Rh3CG136400 Rh3CG136500 Rh3CG171400 Rh3DG135500 Rh3DG194300 Rh4CG167800 Rh4DG114400 Rh5BG427500 Rh5CG451200 Rh5DG441200 Rh6AG062200 Rh7CG438900 Rh7DG409600
rosa_wichuraiana	Rw0G008550 Rw3G014840 Rw3G014870 Rw6G005530 Rw6G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	680
AciI	CCGC	1 cut(s)	706
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	4 cut(s)	124, 228, 312, 332
AfiI	CCNNNNNNNGG	4 cut(s)	29, 191, 546, 777
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	5 cut(s)	45, 110, 470, 560, 817
AluI	AGCT	5 cut(s)	45, 110, 470, 560, 817
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	3 cut(s)	501, 591, 673
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	512
ApeKI	GCWGC	3 cut(s)	77, 530, 578
ApoI	RAATTY	4 cut(s)	124, 228, 312, 332
AspLEI	GCGC	1 cut(s)	681
AsuHPI	GGTGA	1 cut(s)	811
AsuNHI	GCTAGC	1 cut(s)	446
BbsI	GAAGAC	2 cut(s)	147, 857
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	3 cut(s)	64, 517, 590
BccI	CCATC	2 cut(s)	448, 467
BciT130I	CCWGG	1 cut(s)	163
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	501, 591, 673
BfaI	CTAG	2 cut(s)	266, 447
BfmI	CTRYAG	2 cut(s)	46, 516
BisI	GCNGC	3 cut(s)	78, 531, 579
BlpI	GCTNAGC	1 cut(s)	813
BlsI	GCNGC	3 cut(s)	79, 532, 580
Bme1390I	CCNGG	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	2 cut(s)	25, 307
BmtI	GCTAGC	1 cut(s)	450
BmuI	ACTGGG	1 cut(s)	883
BpiI	GAAGAC	2 cut(s)	147, 857
Bpu1102I	GCTNAGC	1 cut(s)	813
Bsa29I	ATCGAT	1 cut(s)	835
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	540
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 191, 546, 777
Bse1I	ACTGG	2 cut(s)	324, 878
Bse3DI	GCAATG	2 cut(s)	484, 496
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	835
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	2 cut(s)	328, 643
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	4 cut(s)	29, 191, 546, 777
BseMI	GCAATG	2 cut(s)	484, 496
BseMII	CTCAG	2 cut(s)	240, 804
BseNI	ACTGG	2 cut(s)	324, 878
BseRI	GAGGAG	1 cut(s)	772
BseXI	GCAGC	3 cut(s)	64, 517, 590
Bsh1285I	CGRYCG	1 cut(s)	710
BshFI	GGCC	1 cut(s)	514
BshVI	ATCGAT	1 cut(s)	835
BsiEI	CGRYCG	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	766
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	4 cut(s)	29, 191, 546, 777
BsmAI	GTCTC	3 cut(s)	501, 591, 673
BsmFI	GGGAC	1 cut(s)	706
BsnI	GGCC	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp143I	GATC	4 cut(s)	181, 199, 274, 654
Bsp1720I	GCTNAGC	1 cut(s)	813
BspACI	CCGC	1 cut(s)	706
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	2 cut(s)	241, 805
BspDI	ATCGAT	1 cut(s)	835
BspLI	GGNNCC	1 cut(s)	414
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	484, 496
BsrI	ACTGG	2 cut(s)	324, 878
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	4 cut(s)	181, 199, 274, 654
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	412, 667, 697
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	4 cut(s)	448, 683, 687, 691
BstDEI	CTNAG	3 cut(s)	249, 505, 813
BstENI	CCTNNNNNAGG	1 cut(s)	544
BstF5I	GGATG	2 cut(s)	328, 643
BstHHI	GCGC	1 cut(s)	681
BstKTI	GATC	4 cut(s)	184, 202, 277, 657
BstMAI	GTCTC	3 cut(s)	501, 591, 673
BstMBI	GATC	4 cut(s)	181, 199, 274, 654
BstMCI	CGRYCG	1 cut(s)	710
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 404, 551
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	46, 516
BstV1I	GCAGC	3 cut(s)	64, 517, 590
BstV2I	GAAGAC	2 cut(s)	147, 857
BstXI	CCANNNNNNTGG	1 cut(s)	541
Bsu15I	ATCGAT	1 cut(s)	835
BsuRI	GGCC	1 cut(s)	514
BsuTUI	ATCGAT	1 cut(s)	835
BtgZI	GCGATG	2 cut(s)	48, 284
BtsCI	GGATG	2 cut(s)	328, 643
BtsIMutI	CAGTG	1 cut(s)	871
Cac8I	GCNNGC	4 cut(s)	448, 683, 687, 691
CfoI	GCGC	1 cut(s)	681
ClaI	ATCGAT	1 cut(s)	835
CviAII	CATG	5 cut(s)	295, 404, 501, 623, 796
DdeI	CTNAG	3 cut(s)	249, 505, 813
DpnI	GATC	4 cut(s)	183, 201, 276, 656
DpnII	GATC	4 cut(s)	181, 199, 274, 654
Eco130I	CCWWGG	1 cut(s)	540
Eco147I	AGGCCT	1 cut(s)	514
EcoNI	CCTNNNNNAGG	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	540
EcoT22I	ATGCAT	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	5 cut(s)	298, 407, 504, 626, 799
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	5 cut(s)	294, 403, 500, 622, 795
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	78, 531, 579
FokI	GGATG	2 cut(s)	335, 650
Fsp4HI	GCNGC	3 cut(s)	78, 531, 579
FspBI	CTAG	2 cut(s)	266, 447
FspI	TGCGCA	1 cut(s)	680
GlaI	GCGC	1 cut(s)	680
GluI	GCNGC	3 cut(s)	78, 531, 579
HaeIII	GGCC	1 cut(s)	514
HhaI	GCGC	1 cut(s)	681
Hin1II	CATG	5 cut(s)	298, 407, 504, 626, 799
Hin6I	GCGC	1 cut(s)	679
HinP1I	GCGC	1 cut(s)	679
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HinfI	GANTC	2 cut(s)	494, 782
HphI	GGTGA	1 cut(s)	811
Hpy166II	GTNNAC	3 cut(s)	89, 663, 753
Hpy188I	TCNGA	3 cut(s)	54, 589, 612
Hpy188III	TCNNGA	3 cut(s)	137, 309, 821
Hpy8I	GTNNAC	3 cut(s)	89, 663, 753
Hpy99I	CGWCG	1 cut(s)	715
HpyAV	CCTTC	3 cut(s)	158, 479, 544
HpyCH4III	ACNGT	3 cut(s)	412, 667, 697
HpyCH4V	TGCA	2 cut(s)	298, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 404, 551
HpyF3I	CTNAG	3 cut(s)	249, 505, 813
Hsp92II	CATG	5 cut(s)	298, 407, 504, 626, 799
HspAI	GCGC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	181, 199, 274, 654
Lsp1109I	GCAGC	3 cut(s)	64, 517, 590
LweI	GCATC	2 cut(s)	25, 307
MaeI	CTAG	2 cut(s)	266, 447
MalI	GATC	4 cut(s)	183, 201, 276, 656
MboI	GATC	4 cut(s)	181, 199, 274, 654
MboII	GAAGA	3 cut(s)	152, 265, 862
MhlI	GDGCHC	1 cut(s)	766
MluCI	AATT	7 cut(s)	124, 228, 312, 332, 354, 590, 644
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	6 cut(s)	504, 628, 750, 795, 803, 876
Mph1103I	ATGCAT	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	3 cut(s)	116, 404, 551
NdeII	GATC	4 cut(s)	181, 199, 274, 654
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	5 cut(s)	298, 407, 504, 626, 799
NlaIV	GGNNCC	1 cut(s)	414
NsbI	TGCGCA	1 cut(s)	680
NsiI	ATGCAT	1 cut(s)	300
NspI	RCATGY	1 cut(s)	626
PceI	AGGCCT	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	782
PkrI	GCNGC	3 cut(s)	79, 532, 580
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	414
PsrI	GAACNNNNNNTAC	2 cut(s)	271, 303
SatI	GCNGC	3 cut(s)	78, 531, 579
Sau3AI	GATC	4 cut(s)	181, 199, 274, 654
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	766
SfaNI	GCATC	2 cut(s)	25, 307
SfcI	CTRYAG	2 cut(s)	46, 516
Sse9I	AATT	7 cut(s)	124, 228, 312, 332, 354, 590, 644
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	1 cut(s)	706
SspMI	CTAG	2 cut(s)	266, 447
StuI	AGGCCT	1 cut(s)	514
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	412, 667, 697
TaqI	TCGA	2 cut(s)	835, 842
TasI	AATT	7 cut(s)	124, 228, 312, 332, 354, 590, 644
TfiI	GAWTC	1 cut(s)	782
TscAI	CASTG	1 cut(s)	878
TseI	GCWGC	3 cut(s)	77, 530, 578
TspDTI	ATGAA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	878
XagI	CCTNNNNNAGG	1 cut(s)	544
XapI	RAATTY	4 cut(s)	124, 228, 312, 332
XceI	RCATGY	1 cut(s)	626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
XspI	CTAG	2 cut(s)	266, 447
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.