Rw6G036640

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002165
Physical Location & Seq
Reverse (-)
61096146 .. 61097283
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G036640.1

Sequence Viewer

Length: 1056 bp
ATGGATTCTGCTCAAGTCCCCCGTGTTGCAATAGATTTAGGAGAGGATATTTTAAATTATGCCAATATCCTCAATGGAAGCTCAGGGCATAATGATAATATGTTTTCAACGTTTGGTTATCCTGCATCTGGCGATGCTATTAGCTATAGTCAGAACCCTATTCAAAGTCAAGTTGCTGCTCAAAGTGAACCCAAAACCACAAAGAAAGCTAAAAGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTGTCTGCCTGGCTCAATACTACCCTTGATCCAGCAATAGGAAATGATCAAAAAGGTGCTGCTTATTGGAAAAGAATTTGGGACTATTTCTATGCTGAGAAGAACTTTGAACTAGAGTGTGATCGTAATCAGGGTTCTCTCATGCATCGCTGGTCTGGAATTCAACTGGATGTGAACAAATTTTGTGGCTATATTGCTGAAATTGAAAGGACAAGAGCAAGTGGTACAACTGAACAAGATAGGATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCGAGGATACAACTTTACATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCGAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGAAAACTCATGCAACTGTTCCTGCTACTTTGTCTCCTATCACTCCATCTGCTAGCCCAGATACAATAGATTTAGCTGATGGCAATGTTGAAGGTAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGAGAAAGTGGAAGCAGCCCAATCTGAATTAGGAGACTATTATGCTCTAAAAGTTGAACATGCTCATAAGGAGGATGAGCAATTTCAACTGATGTATGATGCAGAACAAGAGAACATTAAGCTGAGGAAACAAGAACTTGAAATTCAAGTTCGAAAAGAGGATAATGCAATAATGGCAATTGATACTTCTACAATGGAACCAATGCGGGCAGAATATTTTAGAGGACTTCAACAGGAAATCATAGCAAAAAGAGCTACTAATGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

351

Amino Acids

39.88

Weight (kDa)

6.73

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 181 - 342 3e-23 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 991
AclI AACGTT 1 cut(s) 110
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 5 cut(s) 223, 327, 411, 431, 927
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 3 cut(s) 128, 290, 768
AjnI CCWGG 1 cut(s) 260
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 7 cut(s) 81, 144, 209, 692, 782, 907, 1040
AluI AGCT 7 cut(s) 81, 144, 209, 692, 782, 907, 1040
Alw26I GTCTC 3 cut(s) 654, 723, 813
AlwI GGATC 1 cut(s) 275
AoxI GGCC 1 cut(s) 734
ApeKI GCWGC 4 cut(s) 176, 311, 752, 800
ApoI RAATTY 5 cut(s) 223, 327, 411, 431, 927
AsuII TTCGAA 1 cut(s) 937
AsuNHI GCTAGC 1 cut(s) 668
BbsI GAAGAC 1 cut(s) 246
BbvCI CCTCAGC 1 cut(s) 908
BbvI GCAGC 4 cut(s) 163, 298, 739, 812
BccI CCATC 2 cut(s) 670, 689
BciT130I CCWGG 1 cut(s) 262
BciVI GTATCC 1 cut(s) 527
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 3 cut(s) 654, 723, 813
BfaI CTAG 4 cut(s) 365, 603, 669, 1054
BfmI CTRYAG 2 cut(s) 145, 738
BfuI GTATCC 1 cut(s) 527
BisI GCNGC 4 cut(s) 177, 312, 753, 801
BlsI GCNGC 4 cut(s) 178, 313, 754, 802
Bme1390I CCNGG 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 984
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 4 cut(s) 124, 134, 406, 874
BmtI GCTAGC 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 246
Bpu10I CCTNAGC 2 cut(s) 82, 908
Bpu14I TTCGAA 1 cut(s) 937
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 762
BsaXI ACNNNNNCTCC 2 cut(s) 634, 664
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 290, 768
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 706
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 2 cut(s) 427, 865
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 3 cut(s) 128, 290, 768
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 3 cut(s) 96, 339, 899
BseNI ACTGG 1 cut(s) 423
BseXI GCAGC 4 cut(s) 163, 298, 739, 812
BshFI GGCC 1 cut(s) 736
BslFI GGGAC 2 cut(s) 2, 347
BslI CCNNNNNNNGG 3 cut(s) 128, 290, 768
BsmAI GTCTC 3 cut(s) 654, 723, 813
BsmFI GGGAC 2 cut(s) 2, 347
BsnI GGCC 1 cut(s) 736
Bsp119I TTCGAA 1 cut(s) 937
Bsp143I GATC 3 cut(s) 280, 298, 373
BspACI CCGC 1 cut(s) 991
BspANI GGCC 1 cut(s) 736
BspCNI CTCAG 3 cut(s) 95, 340, 900
BspLI GGNNCC 1 cut(s) 984
BspOI GCTAGC 1 cut(s) 672
BspPI GGATC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 937
BsrDI GCAATG 1 cut(s) 706
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 1 cut(s) 762
BssMI GATC 3 cut(s) 280, 298, 373
BssT1I CCWWGG 1 cut(s) 762
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 634
BstBI TTCGAA 1 cut(s) 937
BstC8I GCNNGC 2 cut(s) 670, 993
BstDEI CTNAG 3 cut(s) 82, 348, 908
BstENI CCTNNNNNAGG 1 cut(s) 766
BstF5I GGATG 2 cut(s) 427, 865
BstKTI GATC 3 cut(s) 283, 301, 376
BstMAI GTCTC 3 cut(s) 654, 723, 813
BstMBI GATC 3 cut(s) 280, 298, 373
BstMWI GCNNNNNNNGC 5 cut(s) 215, 559, 773, 959, 1037
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 2 cut(s) 566, 848
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 2 cut(s) 145, 738
BstV1I GCAGC 4 cut(s) 163, 298, 739, 812
BstV2I GAAGAC 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 763
BsuI GTATCC 1 cut(s) 527
BsuRI GGCC 1 cut(s) 736
BtgZI GCGATG 2 cut(s) 147, 383
BtsCI GGATG 2 cut(s) 427, 865
Cac8I GCNNGC 2 cut(s) 670, 993
Csp6I GTAC 1 cut(s) 477
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 5 cut(s) 394, 563, 626, 723, 845
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 3 cut(s) 82, 348, 908
DpnI GATC 3 cut(s) 282, 300, 375
DpnII GATC 3 cut(s) 280, 298, 373
DraI TTTAAA 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 762
Eco147I AGGCCT 1 cut(s) 736
EcoNI CCTNNNNNAGG 1 cut(s) 766
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 762
EcoT22I ATGCAT 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 762
FaeI CATG 5 cut(s) 397, 566, 629, 726, 848
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FaqI GGGAC 2 cut(s) 2, 347
FatI CATG 5 cut(s) 393, 562, 625, 722, 844
FauI CCCGC 1 cut(s) 984
FauNDI CATATG 1 cut(s) 547
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 4 cut(s) 177, 312, 753, 801
FokI GGATG 2 cut(s) 434, 872
Fsp4HI GCNGC 4 cut(s) 177, 312, 753, 801
FspBI CTAG 4 cut(s) 365, 603, 669, 1054
GluI GCNGC 4 cut(s) 177, 312, 753, 801
HaeIII GGCC 1 cut(s) 736
Hin1II CATG 5 cut(s) 397, 566, 629, 726, 848
HinfI GANTC 2 cut(s) 5, 716
Hpy166II GTNNAC 2 cut(s) 188, 427
Hpy188I TCNGA 2 cut(s) 153, 811
Hpy188III TCNNGA 2 cut(s) 236, 408
Hpy8I GTNNAC 2 cut(s) 188, 427
HpyAV CCTTC 3 cut(s) 257, 701, 766
HpyCH4III ACNGT 1 cut(s) 634
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 6 cut(s) 29, 125, 397, 629, 887, 953
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 559, 773, 959, 1037
HpyF3I CTNAG 3 cut(s) 82, 348, 908
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 5 cut(s) 397, 566, 629, 726, 848
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 280, 298, 373
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 4 cut(s) 163, 298, 739, 812
LweI GCATC 4 cut(s) 124, 134, 406, 874
MaeI CTAG 4 cut(s) 365, 603, 669, 1054
MaeII ACGT 1 cut(s) 110
MalI GATC 3 cut(s) 282, 300, 375
MboI GATC 3 cut(s) 280, 298, 373
MboII GAAGA 2 cut(s) 251, 364
MfeI CAATTG 1 cut(s) 963
MlyI GAGTC 1 cut(s) 725
MnlI CCTC 9 cut(s) 37, 80, 516, 524, 726, 850, 903, 937, 1001
Mph1103I ATGCAT 1 cut(s) 399
MseI TTAA 2 cut(s) 53, 903
MspR9I CCNGG 1 cut(s) 262
MunI CAATTG 1 cut(s) 963
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 5 cut(s) 215, 559, 773, 959, 1037
NdeI CATATG 1 cut(s) 547
NdeII GATC 3 cut(s) 280, 298, 373
NheI GCTAGC 1 cut(s) 668
NlaIII CATG 5 cut(s) 397, 566, 629, 726, 848
NlaIV GGNNCC 1 cut(s) 984
NsiI ATGCAT 1 cut(s) 399
NspI RCATGY 2 cut(s) 566, 848
NspV TTCGAA 1 cut(s) 937
PceI AGGCCT 1 cut(s) 736
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 4 cut(s) 178, 313, 754, 802
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
Psp1406I AACGTT 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 984
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
SaqAI TTAA 2 cut(s) 53, 903
SatI GCNGC 4 cut(s) 177, 312, 753, 801
Sau3AI GATC 3 cut(s) 280, 298, 373
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 1 cut(s) 262
SfaNI GCATC 4 cut(s) 124, 134, 406, 874
SfcI CTRYAG 2 cut(s) 145, 738
SfuI TTCGAA 1 cut(s) 937
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 736
SsiI CCGC 1 cut(s) 991
SspI AATATT 1 cut(s) 1001
SspMI CTAG 4 cut(s) 365, 603, 669, 1054
StuI AGGCCT 1 cut(s) 736
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 762
TaaI ACNGT 1 cut(s) 634
TaiI ACGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 937
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 53, 903
Tru9I TTAA 2 cut(s) 53, 903
TseI GCWGC 4 cut(s) 176, 311, 752, 800
XagI CCTNNNNNAGG 1 cut(s) 766
XapI RAATTY 5 cut(s) 223, 327, 411, 431, 927
XceI RCATGY 2 cut(s) 566, 848
XspI CTAG 4 cut(s) 365, 603, 669, 1054
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.