Rroxscaffold_3G00264040

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002165
Physical Location & Seq
Reverse (-)
57817422 .. 57819125
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00264040.1

Sequence Viewer

Length: 465 bp
ATGGTTTTCGCTACTACGCTCGCCAAATCTAGGAGAGGAGAGAGAAATTCGAGATGCTCGCTATCTCCTCCAACGGGCAATTTCATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGAGAGGATACAACTTTACATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCGAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGAAAACTCATGCAACGATTCCTGCTACTTCGTCTCCTATCACTCCATCTGCTAGCCCGGATACAATAGATTTAGCTGATGGCAATGTTGAAGGTAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGAGAAAGTGGAAGCAGCCCAATCTGAATTAGGAGACTATTATGCTCGAAAGTTGAACATGCTCATAAGGAGGATGAGCAATTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

154

Amino Acids

17.46

Weight (kDa)

10.05

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 44 - 136 4.5e-17 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 46
AfiI CCNNNNNNNGG 3 cut(s) 30, 74, 357
AgsI TTSAA 4 cut(s) 160, 296, 430, 460
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 2 cut(s) 281, 371
AluI AGCT 2 cut(s) 281, 371
Alw26I GTCTC 3 cut(s) 243, 312, 402
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 341, 389
ApoI RAATTY 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 263
AsuNHI GCTAGC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 328, 401
BccI CCATC 2 cut(s) 259, 278
BciVI GTATCC 2 cut(s) 116, 259
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 3 cut(s) 243, 312, 402
BfaI CTAG 3 cut(s) 30, 192, 258
BfmI CTRYAG 1 cut(s) 327
BfuI GTATCC 2 cut(s) 116, 259
BisI GCNGC 2 cut(s) 342, 390
BlsI GCNGC 2 cut(s) 343, 391
Bme1390I CCNGG 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 44
BmtI GCTAGC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 74, 357
Bse3DI GCAATG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 3 cut(s) 30, 74, 357
BseMI GCAATG 1 cut(s) 295
BseRI GAGGAG 2 cut(s) 51, 57
BseXI GCAGC 2 cut(s) 328, 401
BshFI GGCC 1 cut(s) 325
BsiSI CCGG 1 cut(s) 263
BslI CCNNNNNNNGG 3 cut(s) 30, 74, 357
BsmAI GTCTC 3 cut(s) 243, 312, 402
BsmBI CGTCTC 1 cut(s) 243
BsnI GGCC 1 cut(s) 325
BspANI GGCC 1 cut(s) 325
BspOI GCTAGC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 351
BstC8I GCNNGC 3 cut(s) 21, 59, 259
BstENI CCTNNNNNAGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 453
BstMAI GTCTC 3 cut(s) 243, 312, 402
BstMWI GCNNNNNNNGC 2 cut(s) 148, 362
BstNSI RCATGY 2 cut(s) 155, 436
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 328, 401
BstXI CCANNNNNNTGG 1 cut(s) 352
BsuI GTATCC 2 cut(s) 116, 259
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 453
Cac8I GCNNGC 3 cut(s) 21, 59, 259
CviAII CATG 4 cut(s) 152, 215, 312, 433
CviJI RGCY 7 cut(s) 95, 261, 281, 325, 341, 371, 392
CviKI_1 RGCY 7 cut(s) 95, 261, 281, 325, 341, 371, 392
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 325
EcoNI CCTNNNNNAGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 4 cut(s) 155, 218, 315, 436
FaiI YATR 9 cut(s) 136, 138, 153, 216, 313, 329, 417, 434, 440
FatI CATG 4 cut(s) 151, 214, 311, 432
FauNDI CATATG 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 342, 390
FokI GGATG 1 cut(s) 460
Fsp4HI GCNGC 2 cut(s) 342, 390
FspBI CTAG 3 cut(s) 30, 192, 258
GluI GCNGC 2 cut(s) 342, 390
HaeIII GGCC 1 cut(s) 325
HapII CCGG 1 cut(s) 263
Hin1II CATG 4 cut(s) 155, 218, 315, 436
HinfI GANTC 2 cut(s) 223, 305
HpaII CCGG 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 290, 355
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 362
Hsp92II CATG 4 cut(s) 155, 218, 315, 436
LpnPI CCDG 2 cut(s) 240, 276
Lsp1109I GCAGC 2 cut(s) 328, 401
LweI GCATC 1 cut(s) 44
MaeI CTAG 3 cut(s) 30, 192, 258
MluCI AATT 4 cut(s) 46, 79, 401, 454
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 6 cut(s) 29, 78, 105, 113, 315, 438
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 148, 362
NciI CCSGG 1 cut(s) 263
NdeI CATATG 1 cut(s) 136
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 4 cut(s) 155, 218, 315, 436
NspI RCATGY 2 cut(s) 155, 436
PceI AGGCCT 1 cut(s) 325
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 343, 391
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
SatI GCNGC 2 cut(s) 342, 390
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 263
SetI ASST 4 cut(s) 283, 301, 353, 373
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 327
Sse9I AATT 4 cut(s) 46, 79, 401, 454
SseBI AGGCCT 1 cut(s) 325
SspMI CTAG 3 cut(s) 30, 192, 258
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 351
TaqI TCGA 2 cut(s) 50, 421
TasI AATT 4 cut(s) 46, 79, 401, 454
TfiI GAWTC 1 cut(s) 223
TseI GCWGC 2 cut(s) 341, 389
TspDTI ATGAA 1 cut(s) 73
XagI CCTNNNNNAGG 1 cut(s) 355
XapI RAATTY 1 cut(s) 46
XceI RCATGY 2 cut(s) 155, 436
XspI CTAG 3 cut(s) 30, 192, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.