Rh3CG171400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002165
Physical Location & Seq
Forward (+)
14960503 .. 14961271
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG171400.1

Sequence Viewer

Length: 300 bp
ATGGAGAAGTACTTTGGGAACGCTTACAGAGGAGACCCGGGGGTCCCACACGCCGACCCGGAAAGGTTTGTGAACATATGGATCGGATCCGCTGCCTTCTCTGTGCTGACCTTGTTCAATCCCTACATGTGGCAGCTCTCCAATCAGTTCAATTGGCATGACAAGGCAATGCTGTTTGAGCAGCATCACTGGAAAAGGGCACTGAAGAAAGGGCAGCCCTATCAATTTAAGTGGAATGAGTACATGGACAAGGACCTCAGAGATGCCTACTATATCAACTGGCCGGTTTATTTCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

12.1

Weight (kDa)

7.97

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AciI CCGC 1 cut(s) 90
AclWI GGATC 3 cut(s) 81, 89, 94
AcoI YGGCCR 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 2 cut(s) 11, 242
AfiI CCNNNNNNNGG 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 2 cut(s) 118, 151
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 3 cut(s) 81, 89, 94
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 4 cut(s) 92, 133, 181, 214
AspS9I GGNCC 2 cut(s) 43, 253
AsuC2I CCSGG 3 cut(s) 38, 39, 59
AvaI CYCGRG 1 cut(s) 37
AvaII GGWCC 2 cut(s) 43, 253
BaeGI GKGCMC 1 cut(s) 202
BamHI GGATCC 1 cut(s) 86
BbvI GCAGC 4 cut(s) 79, 145, 193, 226
BcnI CCSGG 3 cut(s) 38, 39, 59
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 4 cut(s) 93, 134, 182, 215
BlsI GCNGC 4 cut(s) 94, 135, 183, 216
BmcAI AGTACT 1 cut(s) 11
Bme1390I CCNGG 3 cut(s) 38, 39, 59
Bme18I GGWCC 2 cut(s) 43, 253
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 43, 253
BmiI GGNNCC 3 cut(s) 44, 45, 88
BmrFI CCNGG 3 cut(s) 38, 39, 59
BmsI GCATC 2 cut(s) 193, 253
BpuMI CCSGG 3 cut(s) 38, 39, 59
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 37, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 194, 284
Bse3DI GCAATG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 37, 38
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 271
BseNI ACTGG 2 cut(s) 194, 284
BseRI GAGGAG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 4 cut(s) 79, 145, 193, 226
BshFI GGCC 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 3 cut(s) 38, 59, 284
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 27
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 81, 86
BspACI CCGC 1 cut(s) 90
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 44, 45, 88
BspPI GGATC 3 cut(s) 81, 89, 94
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 2 cut(s) 194, 284
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 37, 38
BssMI GATC 2 cut(s) 81, 86
BstDEI CTNAG 2 cut(s) 257, 297
BstKTI GATC 2 cut(s) 84, 89
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 81, 86
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 3 cut(s) 36, 37, 57
BstSLI GKGCMC 1 cut(s) 202
BstV1I GCAGC 4 cut(s) 79, 145, 193, 226
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BsuRI GGCC 1 cut(s) 283
BtsIMutI CAGTG 2 cut(s) 187, 200
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 43, 253
Cfr9I CCCGGG 1 cut(s) 37
Csp6I GTAC 2 cut(s) 10, 241
CspCI CAANNNNNGTGG 2 cut(s) 212, 247
CviAII CATG 3 cut(s) 127, 158, 244
CviJI RGCY 3 cut(s) 136, 217, 283
CviKI_1 RGCY 3 cut(s) 136, 217, 283
CviQI GTAC 2 cut(s) 10, 241
DdeI CTNAG 2 cut(s) 257, 297
DpnI GATC 2 cut(s) 83, 88
DpnII GATC 2 cut(s) 81, 86
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 43, 253
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 37
EcoO109I RGGNCCY 2 cut(s) 43, 253
FaeI CATG 3 cut(s) 130, 161, 247
FaiI YATR 6 cut(s) 77, 79, 128, 159, 245, 273
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 126, 157, 243
FauNDI CATATG 1 cut(s) 77
Fnu4HI GCNGC 4 cut(s) 93, 134, 182, 215
Fsp4HI GCNGC 4 cut(s) 93, 134, 182, 215
GluI GCNGC 4 cut(s) 93, 134, 182, 215
HaeIII GGCC 1 cut(s) 283
HapII CCGG 3 cut(s) 38, 59, 284
Hin1II CATG 3 cut(s) 130, 161, 247
HpaII CCGG 3 cut(s) 38, 59, 284
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 86, 260
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 2 cut(s) 257, 297
Hsp92II CATG 3 cut(s) 130, 161, 247
KflI GGGWCCC 1 cut(s) 43
Kzo9I GATC 2 cut(s) 81, 86
LpnPI CCDG 4 cut(s) 51, 72, 175, 265
Lsp1109I GCAGC 4 cut(s) 79, 145, 193, 226
LweI GCATC 2 cut(s) 193, 253
MalI GATC 2 cut(s) 83, 88
MboI GATC 2 cut(s) 81, 86
MboII GAAGA 1 cut(s) 217
MfeI CAATTG 1 cut(s) 151
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 2 cut(s) 151, 224
MnlI CCTC 2 cut(s) 23, 266
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 3 cut(s) 38, 59, 284
MspR9I CCNGG 3 cut(s) 38, 39, 59
MunI CAATTG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 178
NciI CCSGG 3 cut(s) 38, 39, 59
NdeI CATATG 1 cut(s) 77
NdeII GATC 2 cut(s) 81, 86
NlaIII CATG 3 cut(s) 130, 161, 247
NlaIV GGNNCC 3 cut(s) 44, 45, 88
NspI RCATGY 1 cut(s) 130
PciI ACATGT 1 cut(s) 126
PkrI GCNGC 4 cut(s) 94, 135, 183, 216
PpuMI RGGWCCY 2 cut(s) 43, 253
PscI ACATGT 1 cut(s) 126
Psp5II RGGWCCY 2 cut(s) 43, 253
PspN4I GGNNCC 3 cut(s) 44, 45, 88
PspPI GGNCC 2 cut(s) 43, 253
PspPPI RGGWCCY 2 cut(s) 43, 253
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 2 cut(s) 11, 242
RsaNI GTAC 2 cut(s) 10, 241
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 4 cut(s) 93, 134, 182, 215
Sau3AI GATC 2 cut(s) 81, 86
Sau96I GGNCC 2 cut(s) 43, 253
ScaI AGTACT 1 cut(s) 11
ScrFI CCNGG 3 cut(s) 38, 39, 59
SduI GDGCHC 1 cut(s) 202
SetI ASST 4 cut(s) 68, 113, 138, 258
SfaNI GCATC 2 cut(s) 193, 253
SinI GGWCC 2 cut(s) 43, 253
SmaI CCCGGG 1 cut(s) 39
Sse9I AATT 2 cut(s) 151, 224
SsiI CCGC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 36, 37, 57
TasI AATT 2 cut(s) 151, 224
TatI WGTACW 2 cut(s) 9, 240
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 2 cut(s) 194, 207
TseI GCWGC 4 cut(s) 92, 133, 181, 214
TspMI CCCGGG 1 cut(s) 37
TspRI CASTG 2 cut(s) 194, 207
VpaK11BI GGWCC 2 cut(s) 43, 253
XceI RCATGY 1 cut(s) 130
XmaI CCCGGG 1 cut(s) 37
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.