Rh5DG441200

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002165
Physical Location & Seq
Reverse (-)
70705264 .. 70709278
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG441200.1

Sequence Viewer

Length: 1128 bp
ATGAAGGGCTCGAAAACCGAGCGTGAGAAGCGGAAAGTAGCAAAATCTGGCCTCCAGCAGACTCGCTATATCATGGATTCTGCTCAAGTCCCCCGTGTTGCAATAGATTTAGGAGAGGATATTTTAAATTATGCCAATATCCTCAATGGAAGCTCAGGGCATAATGATAATATGTTTTCAACGTTTGGTTATCCTGCATCTGGCGATGCTATTAGCTATAGTCAGAACCCTATTCAAAGTCAAGTTGCTGCTCAAAGTGAACCCAAAACCACAAAGAAAGCTAAAAGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTGTCTGCCTGGCTTAATACTACCCTTGGTCCAGCAATAGGAAATGATCAAAAAGGTGCTGCTTATTGGAAAAGAATTTGGGACTATTTCTATGCTGAGAAGAACTTTGAACTAGAGTGTGATCGTAATCAGGGTTCTCTCATGCATCGCTGGTCTGGAATTCAACTGGATGTGAACAAATTTTGTGGCTATTATGCTGAAATTGAAAGGACAAGAACAAGTGGTACAACTGAACAAGATAGGATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCGAGGATACAACTTTAGATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCGAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGAAAACTCATGCTACGGTTCCTGCTACTTCATCTCCTATCACTCCATCTGCTAGCCCAGATACAATAGATTTAGCTGATGGCAATGTTGAAGGCAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGTAAAAGCTAAAGAGAAAGTGGAAGCAGCCCAATCTGAATTAGGAGACTATTATGCTCTGAAAGTTGAACATGCTCATAAGGAGGATGAGCAATTTCAACTGATGTATGATGCAGAACAAGAGAACATTAAGCTGAGGAAACAAGAATTTGAAATTCAAGTTCGAAAAGAGGATAATGCAATAATGGCAATTGATACTTCTACAATGGAACCAATGCGGGCAGAATATTTTAGAGGACTTCAACAGGAAATCATAGCAAAAAGAGCTACTAATGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

375

Amino Acids

42.8

Weight (kDa)

8.95

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 205 - 366 3.8e-22 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 31, 1063
AclI AACGTT 1 cut(s) 182
AcsI RAATTY 6 cut(s) 295, 399, 483, 503, 992, 999
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 3 cut(s) 200, 362, 840
AjnI CCWGG 1 cut(s) 332
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
AluBI AGCT 7 cut(s) 153, 216, 281, 764, 854, 979, 1112
AluI AGCT 7 cut(s) 153, 216, 281, 764, 854, 979, 1112
Alw26I GTCTC 2 cut(s) 795, 885
AoxI GGCC 2 cut(s) 49, 806
ApeKI GCWGC 4 cut(s) 248, 383, 824, 872
ApoI RAATTY 6 cut(s) 295, 399, 483, 503, 992, 999
AspS9I GGNCC 1 cut(s) 353
AsuII TTCGAA 1 cut(s) 1009
AsuNHI GCTAGC 1 cut(s) 740
AvaII GGWCC 1 cut(s) 353
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 318
BbvCI CCTCAGC 1 cut(s) 980
BbvI GCAGC 4 cut(s) 235, 370, 811, 884
BccI CCATC 2 cut(s) 742, 761
BciT130I CCWGG 1 cut(s) 334
BciVI GTATCC 1 cut(s) 599
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 795, 885
BfaI CTAG 4 cut(s) 437, 675, 741, 1126
BfmI CTRYAG 2 cut(s) 217, 810
BfuI GTATCC 1 cut(s) 599
BisI GCNGC 4 cut(s) 249, 384, 825, 873
BlsI GCNGC 4 cut(s) 250, 385, 826, 874
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 708, 1056
BmrFI CCNGG 1 cut(s) 334
BmsI GCATC 4 cut(s) 196, 206, 478, 946
BmtI GCTAGC 1 cut(s) 744
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 38
Bpu10I CCTNAGC 2 cut(s) 154, 980
Bpu14I TTCGAA 1 cut(s) 1009
BpuEI CTTGAG 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 349, 834
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 362, 840
Bse1I ACTGG 1 cut(s) 495
Bse3DI GCAATG 2 cut(s) 778, 790
Bse8I GATNNNNATC 1 cut(s) 450
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 349, 834
BseGI GGATG 2 cut(s) 499, 937
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 3 cut(s) 200, 362, 840
BseMI GCAATG 2 cut(s) 778, 790
BseMII CTCAG 3 cut(s) 168, 411, 971
BseNI ACTGG 1 cut(s) 495
BseXI GCAGC 4 cut(s) 235, 370, 811, 884
BshFI GGCC 2 cut(s) 51, 808
BslFI GGGAC 2 cut(s) 74, 419
BslI CCNNNNNNNGG 3 cut(s) 200, 362, 840
BsmAI GTCTC 2 cut(s) 795, 885
BsmFI GGGAC 2 cut(s) 74, 419
BsnI GGCC 2 cut(s) 51, 808
Bsp119I TTCGAA 1 cut(s) 1009
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 370, 445
BspACI CCGC 2 cut(s) 31, 1063
BspANI GGCC 2 cut(s) 51, 808
BspCNI CTCAG 3 cut(s) 167, 412, 972
BspLI GGNNCC 2 cut(s) 708, 1056
BspOI GCTAGC 1 cut(s) 744
BspT104I TTCGAA 1 cut(s) 1009
BsrDI GCAATG 2 cut(s) 778, 790
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 2 cut(s) 349, 834
BssMI GATC 2 cut(s) 370, 445
BssT1I CCWWGG 2 cut(s) 349, 834
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 706
BstBI TTCGAA 1 cut(s) 1009
BstC8I GCNNGC 2 cut(s) 742, 1065
BstDEI CTNAG 3 cut(s) 154, 420, 980
BstENI CCTNNNNNAGG 1 cut(s) 838
BstF5I GGATG 2 cut(s) 499, 937
BstKTI GATC 2 cut(s) 373, 448
BstMAI GTCTC 2 cut(s) 795, 885
BstMBI GATC 2 cut(s) 370, 445
BstMWI GCNNNNNNNGC 5 cut(s) 28, 287, 631, 1031, 1109
BstNI CCWGG 1 cut(s) 334
BstNSI RCATGY 2 cut(s) 638, 920
BstSCI CCNGG 1 cut(s) 332
BstSFI CTRYAG 2 cut(s) 217, 810
BstV1I GCAGC 4 cut(s) 235, 370, 811, 884
BstV2I GAAGAC 1 cut(s) 318
BstXI CCANNNNNNTGG 1 cut(s) 835
BsuI GTATCC 1 cut(s) 599
BsuRI GGCC 2 cut(s) 51, 808
BtgZI GCGATG 2 cut(s) 219, 455
BtsCI GGATG 2 cut(s) 499, 937
Cac8I GCNNGC 2 cut(s) 742, 1065
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 549
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CviAII CATG 6 cut(s) 73, 466, 635, 698, 795, 917
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 3 cut(s) 154, 420, 980
DpnI GATC 2 cut(s) 372, 447
DpnII GATC 2 cut(s) 370, 445
DraI TTTAAA 1 cut(s) 126
Eco130I CCWWGG 2 cut(s) 349, 834
Eco147I AGGCCT 1 cut(s) 808
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 353
EcoNI CCTNNNNNAGG 1 cut(s) 838
EcoRI GAATTC 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 2 cut(s) 349, 834
EcoT22I ATGCAT 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 349, 834
FaeI CATG 6 cut(s) 76, 469, 638, 701, 798, 920
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 2 cut(s) 74, 419
FatI CATG 6 cut(s) 72, 465, 634, 697, 794, 916
FauI CCCGC 1 cut(s) 1056
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 4 cut(s) 249, 384, 825, 873
FokI GGATG 2 cut(s) 506, 944
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 4 cut(s) 249, 384, 825, 873
FspBI CTAG 4 cut(s) 437, 675, 741, 1126
GluI GCNGC 4 cut(s) 249, 384, 825, 873
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 2 cut(s) 51, 808
Hin1II CATG 6 cut(s) 76, 469, 638, 701, 798, 920
HinfI GANTC 3 cut(s) 61, 77, 788
Hpy166II GTNNAC 2 cut(s) 260, 499
Hpy188I TCNGA 3 cut(s) 225, 883, 906
Hpy188III TCNNGA 2 cut(s) 308, 480
Hpy8I GTNNAC 2 cut(s) 260, 499
HpyAV CCTTC 3 cut(s) 329, 773, 838
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 5 cut(s) 101, 197, 469, 959, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 287, 631, 1031, 1109
HpyF3I CTNAG 3 cut(s) 154, 420, 980
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 6 cut(s) 76, 469, 638, 701, 798, 920
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 370, 445
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 4 cut(s) 235, 370, 811, 884
LweI GCATC 4 cut(s) 196, 206, 478, 946
MaeI CTAG 4 cut(s) 437, 675, 741, 1126
MaeII ACGT 1 cut(s) 182
MalI GATC 2 cut(s) 372, 447
MboI GATC 2 cut(s) 370, 445
MboII GAAGA 2 cut(s) 323, 436
MfeI CAATTG 1 cut(s) 1035
MhlI GDGCHC 1 cut(s) 11
MlyI GAGTC 2 cut(s) 55, 797
Mph1103I ATGCAT 1 cut(s) 471
MseI TTAA 3 cut(s) 125, 339, 975
MspR9I CCNGG 1 cut(s) 334
MunI CAATTG 1 cut(s) 1035
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 5 cut(s) 28, 287, 631, 1031, 1109
NdeII GATC 2 cut(s) 370, 445
NheI GCTAGC 1 cut(s) 740
NlaIII CATG 6 cut(s) 76, 469, 638, 701, 798, 920
NlaIV GGNNCC 2 cut(s) 708, 1056
NsiI ATGCAT 1 cut(s) 471
NspI RCATGY 2 cut(s) 638, 920
NspV TTCGAA 1 cut(s) 1009
PceI AGGCCT 1 cut(s) 808
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 4 cut(s) 250, 385, 826, 874
PleI GAGTC 2 cut(s) 55, 796
PpsI GAGTC 2 cut(s) 55, 796
Psp1406I AACGTT 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 2 cut(s) 708, 1056
PspPI GGNCC 1 cut(s) 353
PsrI GAACNNNNNNTAC 4 cut(s) 442, 474, 532, 564
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
SaqAI TTAA 3 cut(s) 125, 339, 975
SatI GCNGC 4 cut(s) 249, 384, 825, 873
Sau3AI GATC 2 cut(s) 370, 445
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 2 cut(s) 55, 797
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 4 cut(s) 196, 206, 478, 946
SfcI CTRYAG 2 cut(s) 217, 810
SfuI TTCGAA 1 cut(s) 1009
SinI GGWCC 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SseBI AGGCCT 1 cut(s) 808
SsiI CCGC 2 cut(s) 31, 1063
SspI AATATT 1 cut(s) 1073
SspMI CTAG 4 cut(s) 437, 675, 741, 1126
StuI AGGCCT 1 cut(s) 808
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 2 cut(s) 349, 834
TaaI ACNGT 1 cut(s) 706
TaiI ACGT 1 cut(s) 185
TaqI TCGA 2 cut(s) 11, 1009
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 3 cut(s) 125, 339, 975
Tru9I TTAA 3 cut(s) 125, 339, 975
TseI GCWGC 4 cut(s) 248, 383, 824, 872
TspDTI ATGAA 2 cut(s) 17, 708
VpaK11BI GGWCC 1 cut(s) 353
XagI CCTNNNNNAGG 1 cut(s) 838
XapI RAATTY 6 cut(s) 295, 399, 483, 503, 992, 999
XceI RCATGY 2 cut(s) 638, 920
XspI CTAG 4 cut(s) 437, 675, 741, 1126
Zsp2I ATGCAT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.