Rh4CG167800

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002165
Physical Location & Seq
Forward (+)
36885772 .. 36894533
8762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG167800.1

Sequence Viewer

Length: 1323 bp
ATGCGACTACCGCCGGCAATGGGGATTGGGAGGAGTTGGAGTGGACAGAGGTTTGTGGACGAGGACGAAATGGCGCTTGGATTGGATGCCAGATTTGCTTTTGAGACGGAGGCAGAGGCCGAGGTCGGCGAGGACTTTCTGGGGAACGCTGTGGATGAAGAGGAAGTGATGCATTTTCCTAAGGCCTATAGCAGCCAAACCAAGCGCCGAACCAGTGATTATGTCCTTGACAACGCTTGGTCCTTTCAACGTGGCATGTGCATTCCTTTGGATTCTGCTCAAGTTCCCCGTGTTGCAATAGATTTAGGAGAGGATATTTTAAATTATGCCAATATCCTCAATGGAAGCTCAGGGCATAATGATAATATGTTTTCAACGTTTGGTTATCCTGCATCTGGCGATGCTATTAGCTATAGTCATAACCCTATTCAAAGTCAAGTTGCTGCTCAAAGTGAACCCAAAACCACAAAGAAAGCTAAAAGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTGTCTGCCTGGCTCAATACTACCCTTGATCCAGCAATAGGAAATGATCAAAAAGGTGCTGCTTATTGGAAAAGAATTTGGGACTATTTCTATGCTGAGAAGAACTTTGAACTAGAGTGTGATGGTAATCAGGGTTCTCTCATGCATCGCTGGTCTGGAATTCAACTGGATGTGAACAAATTTTGTGGCTATATTGCTGAAATTGAAAGGACAAGAGCAAGTGGTACAACTGAACAAGATAGGATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCGAGGATACAACTTTACATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCGAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGAAAACTCATGCAACGGTTCCTGCTACTTCGTCTCCTATCACTCCATCTGCTAGCCCAGATACAATAGATTTAGCTGATGGCAATGTTGAAGGTAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTACCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGAGAGAGTGGAAGCAGCCCAATCTGAATTAGGAGACTATTATGCTCTGAAAGTTGAACATGCTCATAAGGAGGATGAGCAATTTCAACTGATGTATGATGCAGAACAAGAGAACATTAAGCTGAGGAAACAAGAACTTGAAATTCAAGTTCGAAAAGAGGATAATGCAATAATGGCAATTGATACTTCTACAATGGAACCAATGCGGGCAGAATATTTTAGAGGACTTCAACAGGAAATCATAGCAAAAAGAGCTACTAATGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

440

Amino Acids

49.89

Weight (kDa)

5.63

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 270 - 431 1.5e-22 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 11, 1258
AclI AACGTT 1 cut(s) 377
AclWI GGATC 1 cut(s) 542
AcsI RAATTY 5 cut(s) 490, 594, 678, 698, 1194
AfaI GTAC 1 cut(s) 745
AfiI CCNNNNNNNGG 4 cut(s) 20, 395, 557, 1035
AjnI CCWGG 1 cut(s) 527
AjuI GAANNNNNNNTTGG 4 cut(s) 60, 92, 842, 874
AluBI AGCT 7 cut(s) 348, 411, 476, 959, 1049, 1174, 1307
AluI AGCT 7 cut(s) 348, 411, 476, 959, 1049, 1174, 1307
Alw26I GTCTC 4 cut(s) 98, 921, 990, 1080
AlwI GGATC 1 cut(s) 542
AoxI GGCC 3 cut(s) 117, 183, 1001
ApeKI GCWGC 4 cut(s) 192, 443, 578, 1067
ApoI RAATTY 5 cut(s) 490, 594, 678, 698, 1194
AspLEI GCGC 2 cut(s) 76, 207
AspS9I GGNCC 1 cut(s) 240
AsuII TTCGAA 1 cut(s) 1204
AsuNHI GCTAGC 1 cut(s) 935
AvaII GGWCC 1 cut(s) 240
AxyI CCTNAGG 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 513
BbvCI CCTCAGC 1 cut(s) 1175
BbvI GCAGC 4 cut(s) 204, 430, 565, 1079
BccI CCATC 3 cut(s) 635, 937, 956
BciT130I CCWGG 1 cut(s) 529
BciVI GTATCC 1 cut(s) 794
BclI TGATCA 1 cut(s) 565
BcoDI GTCTC 4 cut(s) 98, 921, 990, 1080
BfaI CTAG 4 cut(s) 632, 870, 936, 1321
BfmI CTRYAG 3 cut(s) 187, 412, 1005
BfoI RGCGCY 2 cut(s) 77, 208
BfuI GTATCC 1 cut(s) 794
BisI GCNGC 4 cut(s) 193, 444, 579, 1068
BlsI GCNGC 4 cut(s) 194, 445, 580, 1069
Bme1390I CCNGG 1 cut(s) 529
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 903, 1251
BmrFI CCNGG 1 cut(s) 529
BmsI GCATC 6 cut(s) 76, 159, 391, 401, 673, 1141
BmtI GCTAGC 1 cut(s) 939
BpiI GAAGAC 1 cut(s) 513
Bpu10I CCTNAGC 2 cut(s) 349, 1175
Bpu14I TTCGAA 1 cut(s) 1204
BpuEI CTTGAG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 645
BsaJI CCNNGG 2 cut(s) 120, 1029
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 901, 931
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 395, 557, 1035
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 2 cut(s) 213, 690
Bse21I CCTNAGG 1 cut(s) 180
Bse3DI GCAATG 2 cut(s) 24, 973
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 1 cut(s) 529
BseDI CCNNGG 2 cut(s) 120, 1029
BseGI GGATG 4 cut(s) 91, 160, 694, 1132
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 4 cut(s) 20, 395, 557, 1035
BseMI GCAATG 2 cut(s) 24, 973
BseMII CTCAG 3 cut(s) 363, 606, 1166
BseNI ACTGG 2 cut(s) 213, 690
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 4 cut(s) 204, 430, 565, 1079
BshFI GGCC 3 cut(s) 119, 185, 1003
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 4 cut(s) 20, 395, 557, 1035
BsmAI GTCTC 4 cut(s) 98, 921, 990, 1080
BsmBI CGTCTC 2 cut(s) 98, 921
BsmFI GGGAC 1 cut(s) 614
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 3 cut(s) 119, 185, 1003
Bsp119I TTCGAA 1 cut(s) 1204
Bsp143I GATC 2 cut(s) 547, 565
BspACI CCGC 2 cut(s) 11, 1258
BspANI GGCC 3 cut(s) 119, 185, 1003
BspCNI CTCAG 3 cut(s) 362, 607, 1167
BspLI GGNNCC 2 cut(s) 903, 1251
BspOI GCTAGC 1 cut(s) 939
BspPI GGATC 1 cut(s) 542
BspT104I TTCGAA 1 cut(s) 1204
BsrDI GCAATG 2 cut(s) 24, 973
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 2 cut(s) 213, 690
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 120, 1029
BssMI GATC 2 cut(s) 547, 565
BssT1I CCWWGG 1 cut(s) 1029
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 1 cut(s) 901
Bst6I CTCTTC 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 1204
BstC8I GCNNGC 3 cut(s) 15, 937, 1260
BstDEI CTNAG 4 cut(s) 180, 349, 615, 1175
BstENI CCTNNNNNAGG 1 cut(s) 1033
BstF5I GGATG 4 cut(s) 91, 160, 694, 1132
BstH2I RGCGCY 2 cut(s) 77, 208
BstHHI GCGC 2 cut(s) 76, 207
BstKTI GATC 2 cut(s) 550, 568
BstMAI GTCTC 4 cut(s) 98, 921, 990, 1080
BstMBI GATC 2 cut(s) 547, 565
BstMWI GCNNNNNNNGC 7 cut(s) 10, 95, 482, 826, 1040, 1226, 1304
BstNI CCWGG 1 cut(s) 529
BstNSI RCATGY 3 cut(s) 259, 833, 1115
BstSCI CCNGG 1 cut(s) 527
BstSFI CTRYAG 3 cut(s) 187, 412, 1005
BstV1I GCAGC 4 cut(s) 204, 430, 565, 1079
BstV2I GAAGAC 1 cut(s) 513
BstXI CCANNNNNNTGG 1 cut(s) 1030
Bsu36I CCTNAGG 1 cut(s) 180
BsuI GTATCC 1 cut(s) 794
BsuRI GGCC 3 cut(s) 119, 185, 1003
BtgZI GCGATG 2 cut(s) 414, 650
BtsCI GGATG 4 cut(s) 91, 160, 694, 1132
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 15, 937, 1260
CfoI GCGC 2 cut(s) 76, 207
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 744
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 6 cut(s) 256, 661, 830, 893, 990, 1112
CviQI GTAC 1 cut(s) 744
DdeI CTNAG 4 cut(s) 180, 349, 615, 1175
DpnI GATC 2 cut(s) 549, 567
DpnII GATC 2 cut(s) 547, 565
DraI TTTAAA 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 1029
Eco147I AGGCCT 2 cut(s) 185, 1003
Eco47I GGWCC 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 1033
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 1029
EcoT22I ATGCAT 2 cut(s) 174, 666
ErhI CCWWGG 1 cut(s) 1029
Esp3I CGTCTC 2 cut(s) 98, 921
FaeI CATG 6 cut(s) 259, 664, 833, 896, 993, 1115
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 1 cut(s) 614
FatI CATG 6 cut(s) 255, 660, 829, 892, 989, 1111
FauI CCCGC 1 cut(s) 1251
FauNDI CATATG 1 cut(s) 814
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 4 cut(s) 193, 444, 579, 1068
FokI GGATG 4 cut(s) 98, 167, 701, 1139
Fsp4HI GCNGC 4 cut(s) 193, 444, 579, 1068
FspBI CTAG 4 cut(s) 632, 870, 936, 1321
GlaI GCGC 2 cut(s) 75, 206
GluI GCNGC 4 cut(s) 193, 444, 579, 1068
HaeII RGCGCY 2 cut(s) 77, 208
HaeIII GGCC 3 cut(s) 119, 185, 1003
HapII CCGG 1 cut(s) 14
HhaI GCGC 2 cut(s) 76, 207
Hin1II CATG 6 cut(s) 259, 664, 833, 896, 993, 1115
Hin6I GCGC 2 cut(s) 74, 205
HinP1I GCGC 2 cut(s) 74, 205
HinfI GANTC 2 cut(s) 272, 983
HpaII CCGG 1 cut(s) 14
Hpy166II GTNNAC 4 cut(s) 44, 58, 455, 694
Hpy188I TCNGA 2 cut(s) 1078, 1101
Hpy188III TCNNGA 2 cut(s) 503, 675
Hpy8I GTNNAC 4 cut(s) 44, 58, 455, 694
HpyAV CCTTC 3 cut(s) 524, 968, 1033
HpyCH4III ACNGT 1 cut(s) 901
HpyCH4IV ACGT 2 cut(s) 250, 377
HpyCH4V TGCA 8 cut(s) 172, 261, 296, 392, 664, 896, 1154, 1220
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 95, 482, 826, 1040, 1226, 1304
HpyF3I CTNAG 4 cut(s) 180, 349, 615, 1175
HpySE526I ACGT 2 cut(s) 250, 377
Hsp92II CATG 6 cut(s) 259, 664, 833, 896, 993, 1115
HspAI GCGC 2 cut(s) 74, 205
KroI GCCGGC 1 cut(s) 13
KroNI GCCGGC 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 2 cut(s) 547, 565
LmnI GCTCC 1 cut(s) 793
Lsp1109I GCAGC 4 cut(s) 204, 430, 565, 1079
LweI GCATC 6 cut(s) 76, 159, 391, 401, 673, 1141
MaeI CTAG 4 cut(s) 632, 870, 936, 1321
MaeII ACGT 2 cut(s) 250, 377
MalI GATC 2 cut(s) 549, 567
MboI GATC 2 cut(s) 547, 565
MboII GAAGA 3 cut(s) 170, 518, 631
MfeI CAATTG 1 cut(s) 1230
MlyI GAGTC 1 cut(s) 992
MmeI TCCRAC 1 cut(s) 17
Mph1103I ATGCAT 2 cut(s) 174, 666
MroNI GCCGGC 1 cut(s) 13
MseI TTAA 2 cut(s) 320, 1170
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 529
MunI CAATTG 1 cut(s) 1230
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 1 cut(s) 529
MwoI GCNNNNNNNGC 7 cut(s) 10, 95, 482, 826, 1040, 1226, 1304
NaeI GCCGGC 1 cut(s) 15
NdeI CATATG 1 cut(s) 814
NdeII GATC 2 cut(s) 547, 565
NgoMIV GCCGGC 1 cut(s) 13
NheI GCTAGC 1 cut(s) 935
NlaIII CATG 6 cut(s) 259, 664, 833, 896, 993, 1115
NlaIV GGNNCC 2 cut(s) 903, 1251
NmeAIII GCCGAG 1 cut(s) 145
NsiI ATGCAT 2 cut(s) 174, 666
NspI RCATGY 3 cut(s) 259, 833, 1115
NspV TTCGAA 1 cut(s) 1204
PceI AGGCCT 2 cut(s) 185, 1003
PctI GAATGC 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 4 cut(s) 194, 445, 580, 1069
PleI GAGTC 1 cut(s) 991
PpsI GAGTC 1 cut(s) 991
Psp1406I AACGTT 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 527
PspGI CCWGG 1 cut(s) 527
PspN4I GGNNCC 2 cut(s) 903, 1251
PspPI GGNCC 1 cut(s) 240
PsrI GAACNNNNNNTAC 2 cut(s) 637, 669
RsaI GTAC 1 cut(s) 745
RsaNI GTAC 1 cut(s) 744
SaqAI TTAA 2 cut(s) 320, 1170
SatI GCNGC 4 cut(s) 193, 444, 579, 1068
Sau3AI GATC 2 cut(s) 547, 565
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 1 cut(s) 992
ScrFI CCNGG 1 cut(s) 529
SfaNI GCATC 6 cut(s) 76, 159, 391, 401, 673, 1141
SfcI CTRYAG 3 cut(s) 187, 412, 1005
SfuI TTCGAA 1 cut(s) 1204
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
SseBI AGGCCT 2 cut(s) 185, 1003
SsiI CCGC 2 cut(s) 11, 1258
SspI AATATT 1 cut(s) 1268
SspMI CTAG 4 cut(s) 632, 870, 936, 1321
StuI AGGCCT 2 cut(s) 185, 1003
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 1 cut(s) 901
TaiI ACGT 2 cut(s) 253, 380
TaqI TCGA 1 cut(s) 1204
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 320, 1170
Tru9I TTAA 2 cut(s) 320, 1170
TscAI CASTG 1 cut(s) 220
TseI GCWGC 4 cut(s) 192, 443, 578, 1067
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 1033
XapI RAATTY 5 cut(s) 490, 594, 678, 698, 1194
XceI RCATGY 3 cut(s) 259, 833, 1115
XspI CTAG 4 cut(s) 632, 870, 936, 1321
Zsp2I ATGCAT 2 cut(s) 174, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.