Rw6G005530

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002165
Physical Location & Seq
Reverse (-)
8778368 .. 8778709
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005530.1

Sequence Viewer

Length: 342 bp
ATGTTTGTTCAGATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCAAGTATACAACTTTACATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCAAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGAAAACTCATGCTACGATTCCTGCTACTTCGTCTCCTATCACTCCATCTGCTACCCCAGATACAATAGATTTAGCTGATGGCGATGTTGAAGGTAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGCGAAAGTGGAAGCAACCCAATCTGAATTAGGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

113

Amino Acids

12.73

Weight (kDa)

9.42

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 20 - 110 3.5e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 2 cut(s) 88, 224
AluBI AGCT 2 cut(s) 209, 299
AluI AGCT 2 cut(s) 209, 299
Alw26I GTCTC 3 cut(s) 171, 240, 330
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 256
BccI CCATC 2 cut(s) 187, 206
BcoDI GTCTC 3 cut(s) 171, 240, 330
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 255
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 3 cut(s) 171, 240, 330
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 253
BspANI GGCC 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 279
BssNAI GTATAC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 279
Bst1107I GTATAC 1 cut(s) 52
BstENI CCTNNNNNAGG 1 cut(s) 283
BstMAI GTCTC 3 cut(s) 171, 240, 330
BstMWI GCNNNNNNNGC 2 cut(s) 76, 290
BstNSI RCATGY 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 280
BstZ17I GTATAC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 231
CviAII CATG 3 cut(s) 80, 143, 240
CviJI RGCY 5 cut(s) 23, 209, 253, 269, 299
CviKI_1 RGCY 5 cut(s) 23, 209, 253, 269, 299
Eco130I CCWWGG 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 3 cut(s) 83, 146, 243
FaiI YATR 7 cut(s) 52, 64, 66, 81, 144, 241, 257
FatI CATG 3 cut(s) 79, 142, 239
FauNDI CATATG 1 cut(s) 64
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 1 cut(s) 253
Hin1II CATG 3 cut(s) 83, 146, 243
HinfI GANTC 2 cut(s) 151, 233
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 12, 328
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 218, 283
HpyF10VI GCNNNNNNNGC 2 cut(s) 76, 290
Hsp92II CATG 3 cut(s) 83, 146, 243
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 168, 204
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 1 cut(s) 120
MluCI AATT 1 cut(s) 329
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 2 cut(s) 33, 243
MwoI GCNNNNNNNGC 2 cut(s) 76, 290
NdeI CATATG 1 cut(s) 64
NlaIII CATG 3 cut(s) 83, 146, 243
NspI RCATGY 1 cut(s) 83
PceI AGGCCT 1 cut(s) 253
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
SatI GCNGC 1 cut(s) 270
SchI GAGTC 1 cut(s) 242
SetI ASST 4 cut(s) 211, 229, 281, 301
SfcI CTRYAG 1 cut(s) 255
Sse9I AATT 1 cut(s) 329
SseBI AGGCCT 1 cut(s) 253
SspMI CTAG 1 cut(s) 120
StuI AGGCCT 1 cut(s) 253
StyI CCWWGG 1 cut(s) 279
TasI AATT 1 cut(s) 329
TfiI GAWTC 1 cut(s) 151
TseI GCWGC 1 cut(s) 269
XagI CCTNNNNNAGG 1 cut(s) 283
XceI RCATGY 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.