Prupe.6G232500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0002165
Physical Location & Seq
Reverse (-)
23494923 .. 23495693
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G232500.1

Sequence Viewer

Length: 300 bp
ATGGAGAAGTATTTTGGGAACGCGTACAGAGGAGACCCGGGGGTCCCACATGCCGACCCGGAACGCTTTGTGAACATATGGATCGGGTCCGCTGCCTTCTCTGCGCTCACTTGGGTCAACCCCTACATGTGGCAGCTCTCCAATCAGTTCAACTGGCATGACAAAGCAATGTGCTTTGAGCAGTATCACTGGAAGAAGGCCATGAAGAAAGGGGAGCCCTACAAATTTAAGTGGAACCAGTACATGGACAAGGATCTCAGAGATTCCTACTATTTCAACTGGCCTGTTTATTTCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

12.15

Weight (kDa)

8.63

Isoelectric Point (pI)

25.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AccB7I CCANNNNNTGG 1 cut(s) 244
AccII CGCG 1 cut(s) 23
AciI CCGC 1 cut(s) 90
AclWI GGATC 2 cut(s) 89, 261
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 2 cut(s) 26, 242
AfiI CCNNNNNNNGG 2 cut(s) 129, 244
AflIII ACRYGT 2 cut(s) 21, 126
AgsI TTSAA 2 cut(s) 151, 277
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 2 cut(s) 89, 261
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 2 cut(s) 198, 281
ApeKI GCWGC 2 cut(s) 92, 133
ApoI RAATTY 1 cut(s) 224
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 43, 87
AsuC2I CCSGG 3 cut(s) 38, 39, 59
AvaI CYCGRG 1 cut(s) 37
AvaII GGWCC 2 cut(s) 43, 87
BanII GRGCYC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 79, 145
BcnI CCSGG 3 cut(s) 38, 39, 59
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 2 cut(s) 93, 134
BlsI GCNGC 2 cut(s) 94, 135
Bme1390I CCNGG 3 cut(s) 38, 39, 59
Bme18I GGWCC 2 cut(s) 43, 87
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 43, 87
BmiI GGNNCC 5 cut(s) 44, 45, 88, 216, 236
BmrFI CCNGG 3 cut(s) 38, 39, 59
BpuMI CCSGG 3 cut(s) 38, 39, 59
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 37, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 244
Bse1I ACTGG 4 cut(s) 158, 194, 238, 284
Bse3DI GCAATG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 37, 38
BseLI CCNNNNNNNGG 2 cut(s) 129, 244
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 271
BseNI ACTGG 4 cut(s) 158, 194, 238, 284
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 79, 145
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 200, 283
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 38, 59
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 129, 244
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 2 cut(s) 200, 283
Bso31I GGTCTC 1 cut(s) 27
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 81, 253
BspACI CCGC 1 cut(s) 90
BspANI GGCC 2 cut(s) 200, 283
BspCNI CTCAG 1 cut(s) 270
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 5 cut(s) 44, 45, 88, 216, 236
BspPI GGATC 2 cut(s) 89, 261
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 4 cut(s) 158, 194, 238, 284
BssECI CCNNGG 2 cut(s) 37, 38
BssMI GATC 2 cut(s) 81, 253
BstDEI CTNAG 2 cut(s) 257, 297
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 2 cut(s) 84, 256
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 81, 253
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 2 cut(s) 53, 130
BstSCI CCNGG 3 cut(s) 36, 37, 57
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 79, 145
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 2 cut(s) 200, 283
BtsIMutI CAGTG 1 cut(s) 187
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 43, 87
Cfr9I CCCGGG 1 cut(s) 37
Csp6I GTAC 2 cut(s) 25, 241
CviAII CATG 5 cut(s) 50, 127, 158, 202, 244
CviJI RGCY 4 cut(s) 136, 200, 217, 283
CviKI_1 RGCY 4 cut(s) 136, 200, 217, 283
CviQI GTAC 2 cut(s) 25, 241
DdeI CTNAG 2 cut(s) 257, 297
DpnI GATC 2 cut(s) 83, 255
DpnII GATC 2 cut(s) 81, 253
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 43, 87
Eco88I CYCGRG 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 5 cut(s) 53, 130, 161, 205, 247
FaiI YATR 7 cut(s) 51, 77, 79, 128, 159, 203, 245
FaqI GGGAC 1 cut(s) 29
FatI CATG 5 cut(s) 49, 126, 157, 201, 243
FauNDI CATATG 1 cut(s) 77
Fnu4HI GCNGC 2 cut(s) 93, 134
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 2 cut(s) 93, 134
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 93, 134
HaeIII GGCC 2 cut(s) 200, 283
HapII CCGG 2 cut(s) 38, 59
HhaI GCGC 1 cut(s) 106
Hin1II CATG 5 cut(s) 53, 130, 161, 205, 247
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 1 cut(s) 263
HpaII CCGG 2 cut(s) 38, 59
Hpy166II GTNNAC 2 cut(s) 73, 118
Hpy188I TCNGA 1 cut(s) 260
Hpy8I GTNNAC 2 cut(s) 73, 118
HpyAV CCTTC 2 cut(s) 106, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 257, 297
Hsp92II CATG 5 cut(s) 53, 130, 161, 205, 247
HspAI GCGC 1 cut(s) 104
KflI GGGWCCC 1 cut(s) 43
Kzo9I GATC 2 cut(s) 81, 253
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 6 cut(s) 51, 72, 139, 175, 251, 265
Lsp1109I GCAGC 2 cut(s) 79, 145
MalI GATC 2 cut(s) 83, 255
MboI GATC 2 cut(s) 81, 253
MboII GAAGA 2 cut(s) 205, 217
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 1 cut(s) 224
MluI ACGCGT 1 cut(s) 21
MnlI CCTC 1 cut(s) 23
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 2 cut(s) 38, 59
MspR9I CCNGG 3 cut(s) 38, 39, 59
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 3 cut(s) 38, 39, 59
NdeI CATATG 1 cut(s) 77
NdeII GATC 2 cut(s) 81, 253
NlaIII CATG 5 cut(s) 53, 130, 161, 205, 247
NlaIV GGNNCC 5 cut(s) 44, 45, 88, 216, 236
NspI RCATGY 2 cut(s) 53, 130
PciI ACATGT 1 cut(s) 126
PfeI GAWTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 2 cut(s) 94, 135
PpuMI RGGWCCY 1 cut(s) 43
PscI ACATGT 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 43
PspN4I GGNNCC 5 cut(s) 44, 45, 88, 216, 236
PspPI GGNCC 2 cut(s) 43, 87
PspPPI RGGWCCY 1 cut(s) 43
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 2 cut(s) 26, 242
RsaNI GTAC 2 cut(s) 25, 241
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 2 cut(s) 93, 134
Sau3AI GATC 2 cut(s) 81, 253
Sau96I GGNCC 2 cut(s) 43, 87
ScrFI CCNGG 3 cut(s) 38, 39, 59
SduI GDGCHC 1 cut(s) 219
SetI ASST 1 cut(s) 138
SinI GGWCC 2 cut(s) 43, 87
SmaI CCCGGG 1 cut(s) 39
Sse9I AATT 1 cut(s) 224
SsiI CCGC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 36, 37, 57
TasI AATT 1 cut(s) 224
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 194
TseI GCWGC 2 cut(s) 92, 133
TspDTI ATGAA 1 cut(s) 218
TspMI CCCGGG 1 cut(s) 37
TspRI CASTG 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 2 cut(s) 43, 87
XapI RAATTY 1 cut(s) 224
XceI RCATGY 2 cut(s) 53, 130
XmaI CCCGGG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.