Rorug01G0261200

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002165
Physical Location & Seq
Reverse (-)
37059594 .. 37061592
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0261200.1

Sequence Viewer

Length: 918 bp
ATGGATATTCGAAACAAGCTGACCTATTCAGAAGGTATCCCGTTTGGCCGTCACTCTCAGTTCGTCACCGTGCCTCCAGCGCTGGGCCTCCGTGCGCGGCGCTCCTCCGCTTCGCTGTGCCACCACGGCTCTCTCTCTCTGCGCGACTCTGCCTCGGTCTCCCTCTGTTCCACTCCACTGCTCATCCAGTCCTTTTCAGCCTCCAGCCCACAGGTTCTCTCTCTCCGGCACGGACCCTTTCCATCTCAGCCTCTCTCCTTGACCGTCGAGGCGTCGACGTCGAATAGCCTTGAAGTCTCGAACTTGGTTTCTCTCTTCCTCAAGCAGCAAAGCAGAAAGCCAGAAACTGTTGGTTACACTCTGGGTTCGATTTCTGGGTTTTCACTTACATTCTGGGTTTCACTTTTCAAGCTTGCTTGGTTACTGAAATCAAGCTTGGTTTCATGCACTCTGTGCATTATCAGTAATCTAATTTATAAAAGTAGCAACTTGGTAAACTTCCAATGGGGCCCATTTCCTGTTGAGATGACCGGAGTCTCTGTAATTGTTCCATCACCATCAGGTGCAAAGCTTCTTGTAGTTCGTAATCCTGAATCTCCCCCTGTCAATTCGAAATTTGGGGTCCAGCTCAAGTTGAGAAGGAATTCCATATCCATTCTGTTCATGGCTCAGTATATGCTGATGGCTGTGAATATCAATTCATTCAATTTTGGCATTTGCAACAGCTCTCTTAGTCCATATCTCAATGTCATTCTGCCAGTTCTTCTTCACCAGATTCATATCAATGTGCTCAGTTACTTTACTAATAATGACAACATCTCAAATCAGATTCCAAAGGAGCTGGTAACTACTCCAACTGATGAAACTGACATGATACAATCAACGGGGGGTCACATTGAGTGCGTGGATGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

305

Amino Acids

33.38

Weight (kDa)

8.93

Isoelectric Point (pI)

58.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APEH_N PF19283 154 - 200 8e-16 Acylamino-acid-releasing enzyme, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AatII GACGTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 275
AccII CGCG 2 cut(s) 97, 144
AciI CCGC 2 cut(s) 97, 108
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 614, 643
AcyI GRCGYC 2 cut(s) 272, 278
AdeI CACNNNGTG 1 cut(s) 453
AfeI AGCGCT 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 3 cut(s) 293, 409, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 7 cut(s) 19, 412, 435, 571, 628, 726, 841
AluI AGCT 7 cut(s) 19, 412, 435, 571, 628, 726, 841
Alw21I GWGCWC 1 cut(s) 792
Alw26I GTCTC 4 cut(s) 163, 301, 541, 905
AlwNI CAGNNNCTG 1 cut(s) 347
Aor51HI AGCGCT 1 cut(s) 81
AoxI GGCC 3 cut(s) 46, 85, 508
ApaI GGGCCC 1 cut(s) 512
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 2 cut(s) 614, 643
Asp700I GAANNNNTTC 1 cut(s) 643
AspLEI GCGC 4 cut(s) 82, 97, 102, 144
AspS9I GGNCC 5 cut(s) 85, 233, 508, 509, 622
AsuHPI GGTGA 3 cut(s) 58, 546, 761
AsuII TTCGAA 2 cut(s) 10, 611
AvaII GGWCC 2 cut(s) 233, 622
BaeGI GKGCMC 1 cut(s) 512
BanII GRGCYC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 792
BbvI GCAGC 1 cut(s) 337
BccI CCATC 4 cut(s) 250, 559, 565, 676
BceAI ACGGC 2 cut(s) 33, 142
BciVI GTATCC 1 cut(s) 47
BcoDI GTCTC 4 cut(s) 163, 301, 541, 905
BfoI RGCGCY 2 cut(s) 83, 103
BfuI GTATCC 1 cut(s) 47
BglI GCCNNNNNGGC 1 cut(s) 126
BisI GCNGC 2 cut(s) 98, 326
BlsI GCNGC 2 cut(s) 99, 327
Bme18I GGWCC 2 cut(s) 233, 622
BmgT120I GGNCC 5 cut(s) 85, 233, 508, 509, 622
BmiI GGNNCC 4 cut(s) 235, 509, 510, 623
BoxI GACNNNNGTC 1 cut(s) 533
BpmI CTGGAG 2 cut(s) 60, 187
Bpu14I TTCGAA 2 cut(s) 10, 611
BpuEI CTTGAG 2 cut(s) 305, 614
BsaBI GATNNNNATC 1 cut(s) 779
BsaHI GRCGYC 2 cut(s) 272, 278
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 124, 153
BsaWI WCCGGW 1 cut(s) 530
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 525, 555
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 187, 758
Bse8I GATNNNNATC 1 cut(s) 779
BseDI CCNNGG 2 cut(s) 124, 153
BseGI GGATG 2 cut(s) 183, 913
BseJI GATNNNNATC 1 cut(s) 779
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 4 cut(s) 71, 260, 683, 805
BseNI ACTGG 2 cut(s) 187, 758
BseRI GAGGAG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 1 cut(s) 337
BseYI CCCAGC 1 cut(s) 82
Bsh1236I CGCG 2 cut(s) 97, 144
BshFI GGCC 3 cut(s) 48, 87, 510
BsiHKAI GWGCWC 1 cut(s) 792
BsiSI CCGG 2 cut(s) 226, 531
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 4 cut(s) 163, 301, 541, 905
BsnI GGCC 3 cut(s) 48, 87, 510
Bso31I GGTCTC 1 cut(s) 163
Bsp119I TTCGAA 2 cut(s) 10, 611
Bsp120I GGGCCC 1 cut(s) 508
Bsp1286I GDGCHC 2 cut(s) 512, 792
BspACI CCGC 2 cut(s) 97, 108
BspANI GGCC 3 cut(s) 48, 87, 510
BspCNI CTCAG 4 cut(s) 70, 259, 682, 804
BspFNI CGCG 2 cut(s) 97, 144
BspLI GGNNCC 4 cut(s) 235, 509, 510, 623
BspT104I TTCGAA 2 cut(s) 10, 611
BspTNI GGTCTC 1 cut(s) 163
BsrI ACTGG 2 cut(s) 187, 758
BssECI CCNNGG 2 cut(s) 124, 153
BssNI GRCGYC 2 cut(s) 272, 278
Bst4CI ACNGT 3 cut(s) 70, 265, 349
Bst6I CTCTTC 1 cut(s) 320
BstACI GRCGYC 2 cut(s) 272, 278
BstAPI GCANNNNNTGC 1 cut(s) 453
BstBI TTCGAA 2 cut(s) 10, 611
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 5 cut(s) 57, 246, 669, 731, 791
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 183, 913
BstFNI CGCG 2 cut(s) 97, 144
BstH2I RGCGCY 2 cut(s) 83, 103
BstHHI GCGC 4 cut(s) 82, 97, 102, 144
BstMAI GTCTC 4 cut(s) 163, 301, 541, 905
BstMWI GCNNNNNNNGC 3 cut(s) 79, 126, 453
BstPAI GACNNNNGTC 1 cut(s) 533
BstSLI GKGCMC 1 cut(s) 512
BstUI CGCG 2 cut(s) 97, 144
BstV1I GCAGC 1 cut(s) 337
BsuI GTATCC 1 cut(s) 47
BsuRI GGCC 3 cut(s) 48, 87, 510
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 183, 913
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 414
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 4 cut(s) 82, 97, 102, 144
Cfr13I GGNCC 5 cut(s) 85, 233, 508, 509, 622
CseI GACGC 1 cut(s) 261
CviAII CATG 3 cut(s) 444, 664, 871
DdeI CTNAG 5 cut(s) 57, 246, 669, 731, 791
DraIII CACNNNGTG 1 cut(s) 453
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 512
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 233, 622
Eco47III AGCGCT 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 512
FaeI CATG 3 cut(s) 447, 667, 874
FaiI YATR 9 cut(s) 445, 477, 650, 665, 675, 677, 739, 780, 872
FatI CATG 3 cut(s) 443, 663, 870
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 2 cut(s) 98, 326
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 2 cut(s) 98, 326
GlaI GCGC 4 cut(s) 81, 96, 101, 143
GluI GCNGC 2 cut(s) 98, 326
GsaI CCCAGC 1 cut(s) 86
GsuI CTGGAG 2 cut(s) 60, 187
HaeII RGCGCY 2 cut(s) 83, 103
HaeIII GGCC 3 cut(s) 48, 87, 510
HapII CCGG 2 cut(s) 226, 531
HgaI GACGC 1 cut(s) 261
HhaI GCGC 4 cut(s) 82, 97, 102, 144
Hin1I GRCGYC 2 cut(s) 272, 278
Hin1II CATG 3 cut(s) 447, 667, 874
Hin6I GCGC 4 cut(s) 80, 95, 100, 142
HinP1I GCGC 4 cut(s) 80, 95, 100, 142
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HindIII AAGCTT 3 cut(s) 410, 433, 569
HinfI GANTC 5 cut(s) 146, 534, 593, 775, 829
HpaII CCGG 2 cut(s) 226, 531
HphI GGTGA 3 cut(s) 58, 546, 761
Hpy166II GTNNAC 2 cut(s) 276, 496
Hpy188I TCNGA 2 cut(s) 31, 828
Hpy188III TCNNGA 2 cut(s) 298, 590
Hpy8I GTNNAC 2 cut(s) 276, 496
Hpy99I CGWCG 4 cut(s) 269, 277, 280, 283
HpyAV CCTTC 2 cut(s) 26, 633
HpyCH4III ACNGT 3 cut(s) 70, 265, 349
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 4 cut(s) 447, 456, 566, 720
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 126, 453
HpyF3I CTNAG 5 cut(s) 57, 246, 669, 731, 791
HpySE526I ACGT 1 cut(s) 278
Hsp92I GRCGYC 2 cut(s) 272, 278
Hsp92II CATG 3 cut(s) 447, 667, 874
HspAI GCGC 4 cut(s) 80, 95, 100, 142
LmnI GCTCC 2 cut(s) 107, 838
Lsp1109I GCAGC 1 cut(s) 337
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 7 cut(s) 50, 64, 353, 420, 794, 844, 890
MboII GAAGA 3 cut(s) 307, 755, 758
MhlI GDGCHC 2 cut(s) 512, 792
MluCI AATT 7 cut(s) 471, 543, 607, 614, 643, 697, 706
MlyI GAGTC 2 cut(s) 140, 543
MmeI TCCRAC 1 cut(s) 878
MnlI CCTC 9 cut(s) 84, 98, 115, 163, 173, 211, 261, 262, 329
MroXI GAANNNNTTC 1 cut(s) 643
MslI CAYNNNNRTG 1 cut(s) 783
MspI CCGG 2 cut(s) 226, 531
MteI GCGCNGCGC 1 cut(s) 98
MvnI CGCG 2 cut(s) 97, 144
MwoI GCNNNNNNNGC 3 cut(s) 79, 126, 453
NlaIII CATG 3 cut(s) 447, 667, 874
NlaIV GGNNCC 4 cut(s) 235, 509, 510, 623
NmuCI GTSAC 3 cut(s) 50, 64, 890
NspV TTCGAA 2 cut(s) 10, 611
PdmI GAANNNNTTC 1 cut(s) 643
PfeI GAWTC 3 cut(s) 593, 775, 829
PkrI GCNGC 2 cut(s) 99, 327
PleI GAGTC 2 cut(s) 140, 542
PpsI GAGTC 2 cut(s) 140, 542
PshAI GACNNNNGTC 1 cut(s) 533
PsiI TTATAA 1 cut(s) 477
PspFI CCCAGC 1 cut(s) 82
PspN4I GGNNCC 4 cut(s) 235, 509, 510, 623
PspOMI GGGCCC 1 cut(s) 508
PspPI GGNCC 5 cut(s) 85, 233, 508, 509, 622
PstNI CAGNNNCTG 1 cut(s) 347
RseI CAYNNNNRTG 1 cut(s) 783
SalI GTCGAC 1 cut(s) 274
SatI GCNGC 2 cut(s) 98, 326
Sau96I GGNCC 5 cut(s) 85, 233, 508, 509, 622
SchI GAGTC 2 cut(s) 140, 543
SduI GDGCHC 2 cut(s) 512, 792
SfuI TTCGAA 2 cut(s) 10, 611
SgrDI CGTCGACG 1 cut(s) 274
SinI GGWCC 2 cut(s) 233, 622
SmiMI CAYNNNNRTG 1 cut(s) 783
SmlI CTYRAG 2 cut(s) 320, 629
SmoI CTYRAG 2 cut(s) 320, 629
Sse9I AATT 7 cut(s) 471, 543, 607, 614, 643, 697, 706
SsiI CCGC 2 cut(s) 97, 108
TaaI ACNGT 3 cut(s) 70, 265, 349
TaiI ACGT 1 cut(s) 281
TaqI TCGA 7 cut(s) 10, 267, 275, 281, 299, 368, 611
TaqII GACCGA 1 cut(s) 145
TasI AATT 7 cut(s) 471, 543, 607, 614, 643, 697, 706
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 3 cut(s) 593, 775, 829
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 3 cut(s) 50, 64, 890
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 3 cut(s) 50, 64, 890
TspDTI ATGAA 5 cut(s) 432, 652, 690, 767, 876
TspGWI ACGGA 2 cut(s) 80, 246
TspRI CASTG 1 cut(s) 183
VpaK11BI GGWCC 2 cut(s) 233, 622
XapI RAATTY 2 cut(s) 614, 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XmiI GTMKAC 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 643
ZraI GACGTC 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.