FvH4_6g16300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002165
Physical Location & Seq
Forward (+)
10249391 .. 10249990
600 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16300.t1

Sequence Viewer

Length: 300 bp
ATGGAGAAGTACTTTGGGAATGCGTATAGAGGAGACCCGGGGGTCCCACACGCCGACCCGGAGAGGTTCGTGAACATATGGATCGGGTCGGCTGCCTTCTCTGTGATGACCTTGTTCAATCCCTACATTTGGCAGCTCAACCATCAGTTCAATTGGCATGACAAGGCAATGCTGTTTGAGCAGCATCACTGGAGGAGGGCAAAGAAGAAAAAGCAGCCCTATAAGTTTATGTGGAATGAGTGCATGGACAGGGAGGACAGAGATGCCTACTATCTCAACTGGCCGATTTATTTCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

12.26

Weight (kDa)

8.71

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 281
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 2 cut(s) 118, 151
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 4 cut(s) 92, 133, 181, 214
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 3 cut(s) 38, 39, 59
AvaI CYCGRG 1 cut(s) 37
AvaII GGWCC 1 cut(s) 43
BbvI GCAGC 4 cut(s) 79, 145, 193, 226
BccI CCATC 1 cut(s) 150
BcnI CCSGG 3 cut(s) 38, 39, 59
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 4 cut(s) 93, 134, 182, 215
BlsI GCNGC 4 cut(s) 94, 135, 183, 216
BmcAI AGTACT 1 cut(s) 11
Bme1390I CCNGG 3 cut(s) 38, 39, 59
Bme18I GGWCC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 44, 45
BmrFI CCNGG 3 cut(s) 38, 39, 59
BmsI GCATC 2 cut(s) 193, 253
BpmI CTGGAG 1 cut(s) 211
BpuMI CCSGG 3 cut(s) 38, 39, 59
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 37, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 2 cut(s) 194, 284
Bse3DI GCAATG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 37, 38
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 194, 284
BseRI GAGGAG 2 cut(s) 45, 208
BseXI GCAGC 4 cut(s) 79, 145, 193, 226
BshFI GGCC 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 38, 59
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 27
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 1 cut(s) 81
BspANI GGCC 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 44, 45
BspPI GGATC 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 2 cut(s) 194, 284
BssECI CCNNGG 2 cut(s) 37, 38
BssMI GATC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 297
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstSCI CCNGG 3 cut(s) 36, 37, 57
BstV1I GCAGC 4 cut(s) 79, 145, 193, 226
BsuRI GGCC 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 43
Cfr9I CCCGGG 1 cut(s) 37
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 158, 244
CviJI RGCY 4 cut(s) 92, 136, 217, 283
CviKI_1 RGCY 4 cut(s) 92, 136, 217, 283
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 43
FaeI CATG 2 cut(s) 161, 247
FaiI YATR 7 cut(s) 27, 77, 79, 159, 222, 230, 245
FaqI GGGAC 1 cut(s) 29
FatI CATG 2 cut(s) 157, 243
FauNDI CATATG 1 cut(s) 77
Fnu4HI GCNGC 4 cut(s) 93, 134, 182, 215
Fsp4HI GCNGC 4 cut(s) 93, 134, 182, 215
GluI GCNGC 4 cut(s) 93, 134, 182, 215
GsuI CTGGAG 1 cut(s) 211
HaeIII GGCC 1 cut(s) 283
HapII CCGG 2 cut(s) 38, 59
Hin1II CATG 2 cut(s) 161, 247
HpaII CCGG 2 cut(s) 38, 59
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 2 cut(s) 161, 247
KflI GGGWCCC 1 cut(s) 43
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 5 cut(s) 51, 72, 175, 235, 265
Lsp1109I GCAGC 4 cut(s) 79, 145, 193, 226
LweI GCATC 2 cut(s) 193, 253
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 217
MfeI CAATTG 1 cut(s) 151
MluCI AATT 1 cut(s) 151
MnlI CCTC 5 cut(s) 23, 57, 186, 189, 247
MspI CCGG 2 cut(s) 38, 59
MspR9I CCNGG 3 cut(s) 38, 39, 59
MunI CAATTG 1 cut(s) 151
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 178
NciI CCSGG 3 cut(s) 38, 39, 59
NdeI CATATG 1 cut(s) 77
NdeII GATC 1 cut(s) 81
NlaIII CATG 2 cut(s) 161, 247
NlaIV GGNNCC 2 cut(s) 44, 45
PctI GAATGC 1 cut(s) 25
PkrI GCNGC 4 cut(s) 94, 135, 183, 216
PpuMI RGGWCCY 1 cut(s) 43
Psp5II RGGWCCY 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 44, 45
PspPI GGNCC 1 cut(s) 43
PspPPI RGGWCCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SatI GCNGC 4 cut(s) 93, 134, 182, 215
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 1 cut(s) 43
ScaI AGTACT 1 cut(s) 11
ScrFI CCNGG 3 cut(s) 38, 39, 59
SetI ASST 3 cut(s) 68, 113, 138
SfaNI GCATC 2 cut(s) 193, 253
SinI GGWCC 1 cut(s) 43
SmaI CCCGGG 1 cut(s) 39
Sse9I AATT 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 36, 37, 57
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 9
TscAI CASTG 1 cut(s) 194
TseI GCWGC 4 cut(s) 92, 133, 181, 214
TspMI CCCGGG 1 cut(s) 37
TspRI CASTG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 43
XmaI CCCGGG 1 cut(s) 37
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.