RLG00000014977

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002165
Physical Location & Seq
Forward (+)
60215228 .. 60219667
4440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014977

Sequence Viewer

Length: 699 bp
ATGATTTTCAAGTATGATGCAATAGCTAATTACTGTCATTGGTTGGTTTTAGTCCCAAGAGGTCTAGAAGGGATGAGAAAGACGGAAAAAGATAAAGAGTCCTTAAAAACAGTAATTTGGAGGGCTGCAAAGAACACTGACCAGGAGGTCCAGGATCAAAAGCAGCGCCGCAGGCTGCAAGATGTATTGCCACTCGAGTCCCCGTTAGGATCCGACGCCAAGGTGGAAACTGGGGCTCCCAGCAAGGAGTCTGATACGAAACCCAGTGGACATCAAGAAGTAACCAAAAACTCTTCTATGCAACTGAAGCACCCCAATCTCGATCTTATTTTCAGGACAAGAGCAAGTGGTACAACTGAACAAGATAGGATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCAAGTATACAACTTTACATATGAGCATTGTTGGGATGTGTTGAAGTTCCTCCCAAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGAAAACTCATGCTACAATTCCTGCTACTTCGTCTCCTATCACTCCATCTGCTAGCCCAGATACAATAGATTTAGCTGATGGCGATGTTGAAGGCAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGAGAAAGTGGAAGCAGCCCAATCTGAATTAGGAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

233

Amino Acids

26.22

Weight (kDa)

9.19

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 139 - 230 4.7e-15 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 408
AciI CCGC 1 cut(s) 169
AclWI GGATC 3 cut(s) 162, 204, 217
AcuI CTGAAG 1 cut(s) 326
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 642
AgsI TTSAA 3 cut(s) 10, 445, 581
AjnI CCWGG 2 cut(s) 141, 150
AluBI AGCT 3 cut(s) 26, 566, 656
AluI AGCT 3 cut(s) 26, 566, 656
Alw26I GTCTC 3 cut(s) 528, 597, 687
AlwI GGATC 3 cut(s) 162, 204, 217
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 1 cut(s) 608
ApeKI GCWGC 5 cut(s) 125, 163, 175, 626, 674
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 148
AsuNHI GCTAGC 1 cut(s) 542
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 1 cut(s) 148
BamHI GGATCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 238
BbvI GCAGC 5 cut(s) 112, 162, 175, 613, 686
BccI CCATC 2 cut(s) 544, 563
BciT130I CCWGG 2 cut(s) 143, 152
BcoDI GTCTC 3 cut(s) 528, 597, 687
BfaI CTAG 3 cut(s) 65, 477, 543
BfmI CTRYAG 1 cut(s) 612
BfoI RGCGCY 1 cut(s) 169
BisI GCNGC 6 cut(s) 126, 164, 169, 176, 627, 675
BlsI GCNGC 6 cut(s) 127, 165, 170, 177, 628, 676
Bme1390I CCNGG 2 cut(s) 143, 152
Bme18I GGWCC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 211, 237
BmrFI CCNGG 2 cut(s) 143, 152
BmrI ACTGGG 2 cut(s) 240, 258
BmsI GCATC 1 cut(s) 7
BmtI GCTAGC 1 cut(s) 546
BmuI ACTGGG 2 cut(s) 240, 258
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 219, 636
BsaXI ACNNNNNCTCC 4 cut(s) 220, 250, 508, 538
Bsc4I CCNNNNNNNGG 1 cut(s) 642
Bse1I ACTGG 2 cut(s) 235, 264
Bse3DI GCAATG 1 cut(s) 592
BseBI CCWGG 2 cut(s) 143, 152
BseDI CCNNGG 2 cut(s) 219, 636
BseGI GGATG 2 cut(s) 78, 442
BseLI CCNNNNNNNGG 1 cut(s) 642
BseMI GCAATG 1 cut(s) 592
BseNI ACTGG 2 cut(s) 235, 264
BseXI GCAGC 5 cut(s) 112, 162, 175, 613, 686
BseYI CCCAGC 1 cut(s) 239
BshFI GGCC 1 cut(s) 610
BsiHKCI CYCGRG 1 cut(s) 194
BslFI GGGAC 2 cut(s) 38, 184
BslI CCNNNNNNNGG 1 cut(s) 642
BsmAI GTCTC 3 cut(s) 528, 597, 687
BsmBI CGTCTC 1 cut(s) 528
BsmFI GGGAC 2 cut(s) 38, 184
BsnI GGCC 1 cut(s) 610
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 3 cut(s) 154, 209, 322
BspACI CCGC 1 cut(s) 169
BspANI GGCC 1 cut(s) 610
BspLI GGNNCC 2 cut(s) 211, 237
BspOI GCTAGC 1 cut(s) 546
BspPI GGATC 3 cut(s) 162, 204, 217
BsrDI GCAATG 1 cut(s) 592
BsrI ACTGG 2 cut(s) 235, 264
BssECI CCNNGG 2 cut(s) 219, 636
BssMI GATC 3 cut(s) 154, 209, 322
BssNAI GTATAC 1 cut(s) 409
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 219, 636
Bst1107I GTATAC 1 cut(s) 409
Bst2UI CCWGG 2 cut(s) 143, 152
Bst4CI ACNGT 2 cut(s) 35, 112
Bst6I CTCTTC 1 cut(s) 298
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 173, 544
BstENI CCTNNNNNAGG 1 cut(s) 640
BstF5I GGATG 2 cut(s) 78, 442
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 3 cut(s) 157, 212, 325
BstMAI GTCTC 3 cut(s) 528, 597, 687
BstMBI GATC 3 cut(s) 154, 209, 322
BstMWI GCNNNNNNNGC 3 cut(s) 172, 307, 647
BstNI CCWGG 2 cut(s) 143, 152
BstSCI CCNGG 2 cut(s) 141, 150
BstSFI CTRYAG 1 cut(s) 612
BstV1I GCAGC 5 cut(s) 112, 162, 175, 613, 686
BstX2I RGATCY 1 cut(s) 209
BstXI CCANNNNNNTGG 1 cut(s) 637
BstYI RGATCY 1 cut(s) 209
BstZ17I GTATAC 1 cut(s) 409
BsuRI GGCC 1 cut(s) 610
BtgZI GCGATG 1 cut(s) 588
BtsCI GGATG 2 cut(s) 78, 442
BtsIMutI CAGTG 2 cut(s) 135, 271
Cac8I GCNNGC 2 cut(s) 173, 544
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 351
CviAII CATG 2 cut(s) 500, 597
CviQI GTAC 1 cut(s) 351
DpnI GATC 3 cut(s) 156, 211, 324
DpnII GATC 3 cut(s) 154, 209, 322
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 219, 636
Eco147I AGGCCT 1 cut(s) 610
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 194
EcoNI CCTNNNNNAGG 1 cut(s) 640
EcoRII CCWGG 2 cut(s) 141, 150
EcoT14I CCWWGG 2 cut(s) 219, 636
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 219, 636
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 2 cut(s) 503, 600
FaiI YATR 8 cut(s) 15, 299, 409, 421, 423, 501, 598, 614
FaqI GGGAC 2 cut(s) 38, 184
FatI CATG 2 cut(s) 499, 596
FauNDI CATATG 1 cut(s) 421
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 6 cut(s) 126, 164, 169, 176, 627, 675
FokI GGATG 2 cut(s) 85, 449
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 6 cut(s) 126, 164, 169, 176, 627, 675
FspBI CTAG 3 cut(s) 65, 477, 543
GlaI GCGC 1 cut(s) 167
GluI GCNGC 6 cut(s) 126, 164, 169, 176, 627, 675
GsaI CCCAGC 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 1 cut(s) 610
HgaI GACGC 1 cut(s) 224
HhaI GCGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 2 cut(s) 503, 600
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HinfI GANTC 4 cut(s) 98, 197, 248, 590
Hpy166II GTNNAC 2 cut(s) 269, 409
Hpy188I TCNGA 3 cut(s) 214, 253, 685
Hpy188III TCNNGA 4 cut(s) 65, 275, 320, 334
Hpy8I GTNNAC 2 cut(s) 269, 409
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 62, 575, 640
HpyCH4III ACNGT 2 cut(s) 35, 112
HpyCH4V TGCA 4 cut(s) 20, 128, 178, 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 307, 647
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 2 cut(s) 503, 600
HspAI GCGC 1 cut(s) 166
Kzo9I GATC 3 cut(s) 154, 209, 322
LmnI GCTCC 2 cut(s) 241, 400
Lsp1109I GCAGC 5 cut(s) 112, 162, 175, 613, 686
LweI GCATC 1 cut(s) 7
MaeI CTAG 3 cut(s) 65, 477, 543
MaeIII GTNAC 1 cut(s) 280
MalI GATC 3 cut(s) 156, 211, 324
MboI GATC 3 cut(s) 154, 209, 322
MboII GAAGA 1 cut(s) 285
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 238
MluCI AATT 4 cut(s) 28, 114, 507, 686
MlyI GAGTC 4 cut(s) 107, 206, 257, 599
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 6 cut(s) 53, 114, 139, 390, 461, 600
MseI TTAA 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 143, 152
MvaI CCWGG 2 cut(s) 143, 152
MwoI GCNNNNNNNGC 3 cut(s) 172, 307, 647
NdeI CATATG 1 cut(s) 421
NdeII GATC 3 cut(s) 154, 209, 322
NheI GCTAGC 1 cut(s) 542
NlaIII CATG 2 cut(s) 503, 600
NlaIV GGNNCC 2 cut(s) 211, 237
PaeR7I CTCGAG 1 cut(s) 194
PceI AGGCCT 1 cut(s) 610
PfoI TCCNGGA 1 cut(s) 150
PkrI GCNGC 6 cut(s) 127, 165, 170, 177, 628, 676
PleI GAGTC 4 cut(s) 106, 205, 256, 598
PpsI GAGTC 4 cut(s) 106, 205, 256, 598
Psp6I CCWGG 2 cut(s) 141, 150
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 2 cut(s) 141, 150
PspN4I GGNNCC 2 cut(s) 211, 237
PspPI GGNCC 1 cut(s) 148
PspXI VCTCGAGB 1 cut(s) 194
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 6 cut(s) 126, 164, 169, 176, 627, 675
Sau3AI GATC 3 cut(s) 154, 209, 322
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 4 cut(s) 107, 206, 257, 599
ScrFI CCNGG 2 cut(s) 143, 152
SduI GDGCHC 1 cut(s) 238
SetI ASST 7 cut(s) 28, 64, 150, 225, 568, 638, 658
SfaNI GCATC 1 cut(s) 7
SfcI CTRYAG 1 cut(s) 612
Sfr274I CTCGAG 1 cut(s) 194
SinI GGWCC 1 cut(s) 148
SlaI CTCGAG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 4 cut(s) 28, 114, 507, 686
SseBI AGGCCT 1 cut(s) 610
SsiI CCGC 1 cut(s) 169
SspMI CTAG 3 cut(s) 65, 477, 543
StuI AGGCCT 1 cut(s) 610
StyD4I CCNGG 2 cut(s) 141, 150
StyI CCWWGG 2 cut(s) 219, 636
TaaI ACNGT 2 cut(s) 35, 112
TaqI TCGA 2 cut(s) 195, 321
TasI AATT 4 cut(s) 28, 114, 507, 686
TauI GCSGC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 2 cut(s) 142, 271
TseI GCWGC 5 cut(s) 125, 163, 175, 626, 674
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 2 cut(s) 142, 271
VpaK11BI GGWCC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 640
XbaI TCTAGA 1 cut(s) 64
XhoI CTCGAG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 3 cut(s) 65, 477, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.