Rh2BG234200

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002165
Physical Location & Seq
Reverse (-)
23309075 .. 23309647
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG234200.1

Sequence Viewer

Length: 573 bp
ATGTTTGTTCAGATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCGAGGATACAACTTTATATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCGAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGAAAACTCATGCAACGGTTCCTGCTACTTCGTCTCCTATCACTCCATCTGCTAGCCCAGATACAATAGATTTAGCTGATGGCAATGTTGAAGGTAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGCAAAAGCTAAAGAGAAAGTGGAAGCAGCCCAATCTGAATTAGGAGACTATTATGCTCTGAAAGTTGAACATGCTCATAAGGAGGATGAGCAATTTCAACTGATGTATGATGCAGAACAAGAGAACATTAAGCTGAGGAAACAAGAACTTGAAATTCAAGTTCGAAAAGAGGATAATGCAATAATGGCAATTGACACTTCTACAATGGAACCAATGCGGGCAGAATATTTTAGAGGACTTCAACAGGAAATCATAGCAAAAAGAGCTACTAATGGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

190

Amino Acids

21.87

Weight (kDa)

8.72

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 20 - 181 2.3e-23 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 508
AcsI RAATTY 1 cut(s) 444
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 7 cut(s) 88, 224, 359, 389, 443, 449, 533
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 4 cut(s) 209, 299, 424, 557
AluI AGCT 4 cut(s) 209, 299, 424, 557
Alw26I GTCTC 3 cut(s) 171, 240, 330
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 269, 317
ApoI RAATTY 1 cut(s) 444
AsuII TTCGAA 1 cut(s) 454
AsuNHI GCTAGC 1 cut(s) 185
BbvCI CCTCAGC 1 cut(s) 425
BbvI GCAGC 2 cut(s) 256, 329
BccI CCATC 2 cut(s) 187, 206
BciVI GTATCC 1 cut(s) 44
BcoDI GTCTC 3 cut(s) 171, 240, 330
BfaI CTAG 3 cut(s) 120, 186, 571
BfmI CTRYAG 1 cut(s) 255
BfuI GTATCC 1 cut(s) 44
BisI GCNGC 2 cut(s) 270, 318
BlsI GCNGC 2 cut(s) 271, 319
BmiI GGNNCC 2 cut(s) 153, 501
BmsI GCATC 1 cut(s) 391
BmtI GCTAGC 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 425
Bpu14I TTCGAA 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 256, 329
BshFI GGCC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 3 cut(s) 171, 240, 330
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 253
Bsp119I TTCGAA 1 cut(s) 454
BspACI CCGC 1 cut(s) 508
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 417
BspLI GGNNCC 2 cut(s) 153, 501
BspOI GCTAGC 1 cut(s) 189
BspT104I TTCGAA 1 cut(s) 454
BsrDI GCAATG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 454
BstC8I GCNNGC 2 cut(s) 187, 510
BstDEI CTNAG 1 cut(s) 425
BstENI CCTNNNNNAGG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 382
BstMAI GTCTC 3 cut(s) 171, 240, 330
BstMWI GCNNNNNNNGC 4 cut(s) 76, 290, 476, 554
BstNSI RCATGY 2 cut(s) 83, 365
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 256, 329
BstXI CCANNNNNNTGG 1 cut(s) 280
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 382
Cac8I GCNNGC 2 cut(s) 187, 510
CviAII CATG 4 cut(s) 80, 143, 240, 362
CviJI RGCY 9 cut(s) 23, 189, 209, 253, 269, 299, 320, 424, 557
CviKI_1 RGCY 9 cut(s) 23, 189, 209, 253, 269, 299, 320, 424, 557
DdeI CTNAG 1 cut(s) 425
Eco130I CCWWGG 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 4 cut(s) 83, 146, 243, 365
FatI CATG 4 cut(s) 79, 142, 239, 361
FauI CCCGC 1 cut(s) 501
Fnu4HI GCNGC 2 cut(s) 270, 318
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 270, 318
FspBI CTAG 3 cut(s) 120, 186, 571
GluI GCNGC 2 cut(s) 270, 318
HaeIII GGCC 1 cut(s) 253
Hin1II CATG 4 cut(s) 83, 146, 243, 365
HinfI GANTC 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 12, 328, 351
HpyAV CCTTC 2 cut(s) 218, 283
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 146, 404, 470
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 290, 476, 554
HpyF3I CTNAG 1 cut(s) 425
Hsp92II CATG 4 cut(s) 83, 146, 243, 365
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 3 cut(s) 168, 204, 521
Lsp1109I GCAGC 2 cut(s) 256, 329
LweI GCATC 1 cut(s) 391
MaeI CTAG 3 cut(s) 120, 186, 571
MfeI CAATTG 1 cut(s) 480
MluCI AATT 4 cut(s) 329, 383, 444, 480
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 7 cut(s) 33, 41, 243, 367, 420, 454, 518
MseI TTAA 1 cut(s) 420
MunI CAATTG 1 cut(s) 480
MwoI GCNNNNNNNGC 4 cut(s) 76, 290, 476, 554
NheI GCTAGC 1 cut(s) 185
NlaIII CATG 4 cut(s) 83, 146, 243, 365
NlaIV GGNNCC 2 cut(s) 153, 501
NspI RCATGY 2 cut(s) 83, 365
NspV TTCGAA 1 cut(s) 454
PceI AGGCCT 1 cut(s) 253
PkrI GCNGC 2 cut(s) 271, 319
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 153, 501
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 2 cut(s) 270, 318
SchI GAGTC 1 cut(s) 242
SetI ASST 6 cut(s) 211, 229, 281, 301, 426, 559
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 454
Sse9I AATT 4 cut(s) 329, 383, 444, 480
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 1 cut(s) 508
SspI AATATT 1 cut(s) 518
SspMI CTAG 3 cut(s) 120, 186, 571
StuI AGGCCT 1 cut(s) 253
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 454
TasI AATT 4 cut(s) 329, 383, 444, 480
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseI GCWGC 2 cut(s) 269, 317
XagI CCTNNNNNAGG 1 cut(s) 283
XapI RAATTY 1 cut(s) 444
XceI RCATGY 2 cut(s) 83, 365
XspI CTAG 3 cut(s) 120, 186, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.