Rh5CG451200

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002165
Physical Location & Seq
Reverse (-)
62870038 .. 62889480
19443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG451200.1

Sequence Viewer

Length: 387 bp
ATGGCTAAGAGTGATCTAAGCAAAAAAATTGAAGCAAAAAATGGATTTATTGTGGAAGCCAAACAAAAGTTTAGGAGGGAGCGAGGATACAACTTTAGATATGAGCATTGTTGGCATGTGTTGAAGTTCCACCCGAAATGGAACTTGGAACTCTCTAGGAAAAAACCAAAGAAAACTCATGCTACGGTTCCTGCTACTTCATCTCCTATCACTCCATCTGCTAGCCCAGATACAATAGATTTAGCTGATGGCAATGTTGAAGGCAATGAGTCTCCATGCTTGGAGAGGCCTATAGGCAAAAAGGCTGCCAAGACCTTGGCAAGGAAGGTAAAAGCTAAAGAGAAAGTGGAAGCAGCCCAATCTGAATTAGAGACTATTATGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

128

Amino Acids

14.46

Weight (kDa)

9.73

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 32 - 123 5.4e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 3 cut(s) 32, 124, 260
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 2 cut(s) 245, 335
AluI AGCT 2 cut(s) 245, 335
Alw26I GTCTC 2 cut(s) 276, 365
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 305, 353
AsuNHI GCTAGC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 292, 365
BccI CCATC 2 cut(s) 223, 242
BciVI GTATCC 1 cut(s) 80
BcoDI GTCTC 2 cut(s) 276, 365
BfaI CTAG 2 cut(s) 156, 222
BfmI CTRYAG 1 cut(s) 291
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 2 cut(s) 306, 354
BlsI GCNGC 2 cut(s) 307, 355
BmiI GGNNCC 1 cut(s) 189
BmtI GCTAGC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse3DI GCAATG 2 cut(s) 259, 271
BseDI CCNNGG 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 2 cut(s) 259, 271
BseXI GCAGC 2 cut(s) 292, 365
BshFI GGCC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 276, 365
BsnI GGCC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 13
BspANI GGCC 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 189
BspOI GCTAGC 1 cut(s) 225
BsrDI GCAATG 2 cut(s) 259, 271
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 6, 17
BstENI CCTNNNNNAGG 1 cut(s) 319
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 2 cut(s) 276, 365
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 292, 365
BstXI CCANNNNNNTGG 1 cut(s) 316
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 223
CviAII CATG 3 cut(s) 116, 179, 276
CviJI RGCY 8 cut(s) 5, 59, 225, 245, 289, 305, 335, 356
CviKI_1 RGCY 8 cut(s) 5, 59, 225, 245, 289, 305, 335, 356
DdeI CTNAG 2 cut(s) 6, 17
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 315
Eco147I AGGCCT 1 cut(s) 289
EcoNI CCTNNNNNAGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 3 cut(s) 119, 182, 279
FaiI YATR 6 cut(s) 102, 117, 180, 277, 293, 380
FatI CATG 3 cut(s) 115, 178, 275
Fnu4HI GCNGC 2 cut(s) 306, 354
Fsp4HI GCNGC 2 cut(s) 306, 354
FspBI CTAG 2 cut(s) 156, 222
GluI GCNGC 2 cut(s) 306, 354
HaeIII GGCC 1 cut(s) 289
Hin1II CATG 3 cut(s) 119, 182, 279
HinfI GANTC 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 364, 386
HpyAV CCTTC 2 cut(s) 254, 319
HpyCH4III ACNGT 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 2 cut(s) 6, 17
Hsp92II CATG 3 cut(s) 119, 182, 279
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 2 cut(s) 204, 240
Lsp1109I GCAGC 2 cut(s) 292, 365
MaeI CTAG 2 cut(s) 156, 222
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MluCI AATT 2 cut(s) 27, 365
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 3 cut(s) 69, 77, 279
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 13
NheI GCTAGC 1 cut(s) 221
NlaIII CATG 3 cut(s) 119, 182, 279
NlaIV GGNNCC 1 cut(s) 189
NspI RCATGY 1 cut(s) 119
PceI AGGCCT 1 cut(s) 289
PkrI GCNGC 2 cut(s) 307, 355
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 189
SatI GCNGC 2 cut(s) 306, 354
Sau3AI GATC 1 cut(s) 13
SchI GAGTC 1 cut(s) 278
SetI ASST 4 cut(s) 247, 317, 330, 337
SfcI CTRYAG 1 cut(s) 291
Sse9I AATT 2 cut(s) 27, 365
SseBI AGGCCT 1 cut(s) 289
SspMI CTAG 2 cut(s) 156, 222
StuI AGGCCT 1 cut(s) 289
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 187
TasI AATT 2 cut(s) 27, 365
TseI GCWGC 2 cut(s) 305, 353
TspDTI ATGAA 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 319
XceI RCATGY 1 cut(s) 119
XspI CTAG 2 cut(s) 156, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.