MD04G1093900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0002165
Physical Location & Seq
Forward (+)
17083178 .. 17083981
804 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1093900.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGAGAAGTACTTCGGTAACGCATATAGAGGAGACCCGGGTGTCCCACATGCCGACCCGGAACGATTTGTGAACATATGGATCGGGTCCACCGCCTTCTCAGCCCTCACTTGGGTCAATCCCTACATGTGGCAGCTCTCCAATCAGTTCAATTGGCATGACAAAGCAATGCTGTTTGAGCAGTACCATTGGAAAAAGGCAATGAAGAAAGCGGAGCCCTACAAATTTAAGTGGAACGAATACATGGACAAGGACCACAGGGAGTCCTACTATTTCAACTGGCCTGTTTACTTCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

12.25

Weight (kDa)

7.93

Isoelectric Point (pI)

27.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AciI CCGC 2 cut(s) 93, 212
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 2 cut(s) 11, 185
AfiI CCNNNNNNNGG 3 cut(s) 111, 112, 129
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 2 cut(s) 151, 277
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 87, 253
AsuC2I CCSGG 3 cut(s) 38, 39, 59
AvaI CYCGRG 1 cut(s) 37
AvaII GGWCC 2 cut(s) 87, 253
BanII GRGCYC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 145
BcnI CCSGG 3 cut(s) 38, 39, 59
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 11
Bme1390I CCNGG 3 cut(s) 38, 39, 59
Bme18I GGWCC 2 cut(s) 87, 253
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 87, 253
BmiI GGNNCC 2 cut(s) 88, 216
BmrFI CCNGG 3 cut(s) 38, 39, 59
BpuMI CCSGG 3 cut(s) 38, 39, 59
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 112, 129
Bse1I ACTGG 1 cut(s) 284
Bse3DI GCAATG 2 cut(s) 174, 207
BseDI CCNNGG 1 cut(s) 37
BseLI CCNNNNNNNGG 3 cut(s) 111, 112, 129
BseMI GCAATG 2 cut(s) 174, 207
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 38, 59
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 3 cut(s) 111, 112, 129
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 27
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 2 cut(s) 93, 212
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 88, 216
BspPI GGATC 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 2 cut(s) 174, 207
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 100, 297
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 101, 178
BstNSI RCATGY 2 cut(s) 53, 130
BstSCI CCNGG 3 cut(s) 36, 37, 57
BstV1I GCAGC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 87, 253
Cfr9I CCCGGG 1 cut(s) 37
Csp6I GTAC 2 cut(s) 10, 184
CviAII CATG 4 cut(s) 50, 127, 158, 244
CviJI RGCY 4 cut(s) 104, 136, 217, 283
CviKI_1 RGCY 4 cut(s) 104, 136, 217, 283
CviQI GTAC 2 cut(s) 10, 184
DdeI CTNAG 2 cut(s) 100, 297
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 87, 253
Eco88I CYCGRG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 4 cut(s) 53, 130, 161, 247
FaiI YATR 8 cut(s) 25, 27, 51, 77, 79, 128, 159, 245
FaqI GGGAC 1 cut(s) 29
FatI CATG 4 cut(s) 49, 126, 157, 243
FauNDI CATATG 1 cut(s) 77
Fnu4HI GCNGC 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 283
HapII CCGG 2 cut(s) 38, 59
Hin1II CATG 4 cut(s) 53, 130, 161, 247
HinfI GANTC 1 cut(s) 263
HpaII CCGG 2 cut(s) 38, 59
Hpy166II GTNNAC 3 cut(s) 73, 90, 289
Hpy8I GTNNAC 3 cut(s) 73, 90, 289
HpyAV CCTTC 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 178
HpyF3I CTNAG 2 cut(s) 100, 297
Hsp92II CATG 4 cut(s) 53, 130, 161, 247
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 4 cut(s) 51, 72, 244, 265
Lsp1109I GCAGC 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 217
MfeI CAATTG 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 2 cut(s) 151, 224
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 2 cut(s) 23, 116
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 1 cut(s) 228
MspI CCGG 2 cut(s) 38, 59
MspR9I CCNGG 3 cut(s) 38, 39, 59
MunI CAATTG 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 101, 178
NciI CCSGG 3 cut(s) 38, 39, 59
NdeI CATATG 1 cut(s) 77
NdeII GATC 1 cut(s) 81
NlaIII CATG 4 cut(s) 53, 130, 161, 247
NlaIV GGNNCC 2 cut(s) 88, 216
NspI RCATGY 2 cut(s) 53, 130
PciI ACATGT 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PscI ACATGT 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 88, 216
PspPI GGNCC 2 cut(s) 87, 253
RsaI GTAC 2 cut(s) 11, 185
RsaNI GTAC 2 cut(s) 10, 184
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 2 cut(s) 87, 253
ScaI AGTACT 1 cut(s) 11
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 3 cut(s) 38, 39, 59
SduI GDGCHC 1 cut(s) 219
SetI ASST 1 cut(s) 138
SinI GGWCC 2 cut(s) 87, 253
SmaI CCCGGG 1 cut(s) 39
Sse9I AATT 2 cut(s) 151, 224
SsiI CCGC 2 cut(s) 93, 212
StyD4I CCNGG 3 cut(s) 36, 37, 57
TasI AATT 2 cut(s) 151, 224
TatI WGTACW 1 cut(s) 9
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 218
TspMI CCCGGG 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 87, 253
XapI RAATTY 1 cut(s) 224
XceI RCATGY 2 cut(s) 53, 130
XmaI CCCGGG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 11
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.