Rh2BG234300

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002165
Physical Location & Seq
Reverse (-)
23309786 .. 23318781
8996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG234300.1

Sequence Viewer

Length: 486 bp
ATGGCTGGAGGAATTCTTATTGAAGTAGCATGTTTAACATTGACTATTGTTAAACTAACTTTCCCTCGTGTCATTGTTCTCCAACTCAAAGTTACTACTATATTGCTTAATGCCAAGTTAACCCCACAAGATAAATTAGCTGGTGCAGTAGAAATGGATTCTGCTCAAGTCCCCCGTGTTGCAATAGATTTAGGAGAGGATATTTTAAATTATGCCAATATCCTCAATGGAAGCTCAGGGCATAATGATAATATGTTTTCAACGTTTGGTTATCCTGCATCTGGCGATGCTATTAGCTATAGTCAGAACCCTATTCAAAGTCAAGTTGCTGCTCAAAGTGAACCCAAAACCACAAAGAAAGCTAAAAGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTGTCTGCCTGGCTCAATACTACCCTTGATCCAGCAATAGGAAATGATCAAAAAGCAAGTCTGGAATTCAACTGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

161

Amino Acids

17.41

Weight (kDa)

5.32

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 263
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 3 cut(s) 12, 376, 470
AfiI CCNNNNNNNGG 2 cut(s) 281, 443
AgsI TTSAA 5 cut(s) 23, 261, 317, 389, 475
AjnI CCWGG 1 cut(s) 413
AluBI AGCT 4 cut(s) 140, 234, 297, 362
AluI AGCT 4 cut(s) 140, 234, 297, 362
AlwI GGATC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 329
ApoI RAATTY 3 cut(s) 12, 376, 470
ArsI GACNNNNNNTTYG 2 cut(s) 448, 480
BauI CACGAG 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 316
BciT130I CCWGG 1 cut(s) 415
BclI TGATCA 1 cut(s) 451
BfmI CTRYAG 1 cut(s) 298
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 415
BmsI GCATC 2 cut(s) 277, 287
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 443
Bse1I ACTGG 1 cut(s) 482
BseBI CCWGG 1 cut(s) 415
BseGI GGATG 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 281, 443
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 482
BseXI GCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 2 cut(s) 281, 443
BsmFI GGGAC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 433, 451
BspCNI CTCAG 1 cut(s) 248
BspPI GGATC 1 cut(s) 428
BsrI ACTGG 1 cut(s) 482
BssMI GATC 2 cut(s) 433, 451
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 415
BstDEI CTNAG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 486
BstKTI GATC 2 cut(s) 436, 454
BstMBI GATC 2 cut(s) 433, 451
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 415
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 413
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 399
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 486
CviAII CATG 1 cut(s) 30
CviJI RGCY 7 cut(s) 5, 140, 234, 297, 362, 371, 418
CviKI_1 RGCY 7 cut(s) 5, 140, 234, 297, 362, 371, 418
DdeI CTNAG 1 cut(s) 235
DpnI GATC 2 cut(s) 435, 453
DpnII GATC 2 cut(s) 433, 451
DraI TTTAAA 1 cut(s) 207
EcoRI GAATTC 2 cut(s) 12, 470
EcoRII CCWGG 1 cut(s) 413
FaeI CATG 1 cut(s) 33
FaiI YATR 6 cut(s) 31, 101, 213, 243, 254, 300
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 29
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 27
Hin1II CATG 1 cut(s) 33
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 1 cut(s) 158
HpaI GTTAAC 1 cut(s) 120
Hpy166II GTNNAC 2 cut(s) 120, 341
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 2 cut(s) 389, 467
Hpy8I GTNNAC 2 cut(s) 120, 341
HpyAV CCTTC 1 cut(s) 410
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 146, 182, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 1 cut(s) 33
Ksp22I TGATCA 1 cut(s) 451
KspAI GTTAAC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 433, 451
LpnPI CCDG 9 cut(s) 126, 222, 267, 288, 400, 427, 450, 452, 463
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 2 cut(s) 277, 287
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 435, 453
MboI GATC 2 cut(s) 433, 451
MboII GAAGA 1 cut(s) 404
MluCI AATT 5 cut(s) 12, 134, 208, 376, 470
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 3 cut(s) 75, 190, 233
MseI TTAA 5 cut(s) 35, 51, 108, 119, 206
MspR9I CCNGG 1 cut(s) 415
MvaI CCWGG 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 2 cut(s) 433, 451
NlaIII CATG 1 cut(s) 33
NspI RCATGY 1 cut(s) 33
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 331
Psp1406I AACGTT 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
SaqAI TTAA 5 cut(s) 35, 51, 108, 119, 206
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 2 cut(s) 433, 451
ScrFI CCNGG 1 cut(s) 415
SetI ASST 6 cut(s) 142, 236, 266, 299, 364, 402
SfaNI GCATC 2 cut(s) 277, 287
SfcI CTRYAG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Sse9I AATT 5 cut(s) 12, 134, 208, 376, 470
StyD4I CCNGG 1 cut(s) 413
TaiI ACGT 1 cut(s) 266
TasI AATT 5 cut(s) 12, 134, 208, 376, 470
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 5 cut(s) 35, 51, 108, 119, 206
Tru9I TTAA 5 cut(s) 35, 51, 108, 119, 206
TseI GCWGC 1 cut(s) 329
XapI RAATTY 3 cut(s) 12, 376, 470
XceI RCATGY 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.