Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002165

Physical Location & Seq

Genomic Coordinates Reverse (-)

9186254 .. 9205108

Gene Structure 18855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG062200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAAGGCGAGATAGTTGGACTCATCATTGGGGTTTCTATACGGGGTAGTGATTGGAGTGCTTTTGGTAATTTCTGGACTGGTGAGAATGGACTCAGTTGCTTGAGTTGTTACAACTTCTTCATCTTCAGCTCTGGGGTGGCTCCATGTGATAATGTGGATTGTCTTCAGCAATACAATGTTTGCTCAGATATAAACAAACCGAATGGACAGTTTATTTTACCCAGCAATCGAATGAATGTGATGGCATTTATATCCTCACTTCCTGTAAGAAAGATGGATTCTGCTCAAGTCCCCCGTGTTGCAATAGATTTAGGAGAGGATATTTTAAATTATGCCAATATCCTCAATGGAAGCTCAGGGCGTAATGATAATTTGTTTTCAACATTTGGTTATCCTGCATCTGGTGATACTATTAGCTATAGTCAGAACCCTATTCTAAGTCAAGTTGGTGTTCAAAGTGAACCCAAAACCACAAAGAGAGCTAAAAGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTGTCTGCTTGGCTCAATACTACCCTTGATCCAGCAATAGGAAATGATCAAAAAGGTGTTGCTTATTGGAAAAGAATTTGGGAGTATTTCTATGCTGAGAAGAACTTTGAACTAGAGTGTGATCGTAATCAGGGTTCTCTCATGCATCGCTGGTCTGGAATTCAACTGGATGTGAACAAATTTTGTGGCTATTATGCTGAAATTGAAAGGACAAGGGCAAGTGGTACAACTGAACAAGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

257

Amino Acids

28.65

Weight (kDa)

5.15

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09860
fragaria_vesca	FvH4_6g16300
malus_domestica	MD04G1093900.v1.1 MD12G1113600.v1.1
prunus_persica	Prupe.6G232500_v2.0.a1
pyrus_communis	pycom12g11250
rosa_chinensis	RchiOBHm_Chr2g0105031 RchiOBHm_Chr3g0470161 RchiOBHm_Chr7g0231991
rosa_laevigata	RLG00000014977
rosa_multiflora	Rmu_sc0001351.1_g000017 Rmu_sc0002091.1_g000013 Rmu_sc0010369.1_g000006 Rmu_sc0011511.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264040 Rroxscaffold_7G00161710
rosa_rugosa	Rorug01G0261200 Rorug03G0107500
rosa_samantha	Rh1AG240800 Rh2BG234200 Rh2BG234300 Rh2CG180700 Rh3AG156500 Rh3BG134000 Rh3BG180600 Rh3CG136400 Rh3CG136500 Rh3CG171400 Rh3DG135500 Rh3DG194300 Rh4CG167800 Rh4DG114400 Rh5BG427500 Rh5CG451200 Rh5DG441200 Rh6AG062200 Rh7CG438900 Rh7DG409600
rosa_wichuraiana	Rw0G008550 Rw3G014840 Rw3G014870 Rw6G005530 Rw6G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	551
AcsI	RAATTY	4 cut(s)	499, 603, 687, 707
AcuI	CTGAAG	2 cut(s)	112, 152
AfaI	GTAC	1 cut(s)	754
AfiI	CCNNNNNNNGG	2 cut(s)	404, 566
AgsI	TTSAA	6 cut(s)	384, 458, 512, 638, 692, 734
AluBI	AGCT	4 cut(s)	132, 357, 420, 485
AluI	AGCT	4 cut(s)	132, 357, 420, 485
AlwI	GGATC	1 cut(s)	551
ApoI	RAATTY	4 cut(s)	499, 603, 687, 707
AsuHPI	GGTGA	2 cut(s)	95, 419
BbsI	GAAGAC	2 cut(s)	158, 522
BccI	CCATC	3 cut(s)	238, 271, 761
BclI	TGATCA	1 cut(s)	574
BfaI	CTAG	1 cut(s)	641
BfmI	CTRYAG	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	144
BmsI	GCATC	2 cut(s)	410, 682
BpiI	GAAGAC	2 cut(s)	158, 522
Bpu10I	CCTNAGC	1 cut(s)	358
BpuEI	CTTGAG	2 cut(s)	124, 273
BsaBI	GATNNNNATC	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 566
Bse1I	ACTGG	2 cut(s)	85, 699
Bse8I	GATNNNNATC	1 cut(s)	654
BseGI	GGATG	1 cut(s)	703
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	2 cut(s)	404, 566
BseMII	CTCAG	4 cut(s)	109, 201, 372, 615
BseNI	ACTGG	2 cut(s)	85, 699
BseYI	CCCAGC	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	404, 566
BsmFI	GGGAC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	556, 574, 649
BspCNI	CTCAG	4 cut(s)	108, 200, 371, 616
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	551
BsrI	ACTGG	2 cut(s)	85, 699
BssMI	GATC	3 cut(s)	556, 574, 649
Bst4CI	ACNGT	1 cut(s)	213
BstDEI	CTNAG	5 cut(s)	95, 187, 358, 440, 624
BstF5I	GGATG	1 cut(s)	703
BstKTI	GATC	3 cut(s)	559, 577, 652
BstMBI	GATC	3 cut(s)	556, 574, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	421
BstV2I	GAAGAC	2 cut(s)	158, 522
BtgZI	GCGATG	1 cut(s)	659
BtsCI	GGATG	1 cut(s)	703
Csp6I	GTAC	1 cut(s)	753
CspCI	CAANNNNNGTGG	2 cut(s)	694, 729
CviAII	CATG	2 cut(s)	147, 670
CviJI	RGCY	8 cut(s)	132, 143, 357, 420, 485, 494, 541, 717
CviKI_1	RGCY	8 cut(s)	132, 143, 357, 420, 485, 494, 541, 717
CviQI	GTAC	1 cut(s)	753
DdeI	CTNAG	5 cut(s)	95, 187, 358, 440, 624
DpnI	GATC	3 cut(s)	558, 576, 651
DpnII	GATC	3 cut(s)	556, 574, 649
DraI	TTTAAA	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	112, 152
EcoRI	GAATTC	1 cut(s)	687
EcoT22I	ATGCAT	1 cut(s)	675
FaeI	CATG	2 cut(s)	150, 673
FaiI	YATR	9 cut(s)	41, 148, 194, 254, 336, 423, 621, 671, 723
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	2 cut(s)	146, 669
FbaI	TGATCA	1 cut(s)	574
FokI	GGATG	1 cut(s)	710
FspBI	CTAG	1 cut(s)	641
GsaI	CCCAGC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	150, 673
HinfI	GANTC	3 cut(s)	21, 93, 281
HphI	GGTGA	2 cut(s)	95, 419
Hpy166II	GTNNAC	2 cut(s)	464, 703
Hpy188I	TCNGA	2 cut(s)	190, 429
Hpy188III	TCNNGA	3 cut(s)	76, 512, 684
Hpy8I	GTNNAC	2 cut(s)	464, 703
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	305, 401, 673
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	5 cut(s)	95, 187, 358, 440, 624
Hsp92II	CATG	2 cut(s)	150, 673
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	556, 574, 649
LmnI	GCTCC	1 cut(s)	148
LweI	GCATC	2 cut(s)	410, 682
MaeI	CTAG	1 cut(s)	641
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	3 cut(s)	558, 576, 651
MboI	GATC	3 cut(s)	556, 574, 649
MboII	GAAGA	5 cut(s)	112, 118, 158, 527, 640
MluCI	AATT	8 cut(s)	70, 331, 373, 499, 603, 687, 707, 729
MlyI	GAGTC	2 cut(s)	15, 87
MnlI	CCTC	3 cut(s)	268, 313, 356
Mph1103I	ATGCAT	1 cut(s)	675
MseI	TTAA	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	491
NdeII	GATC	3 cut(s)	556, 574, 649
NlaIII	CATG	2 cut(s)	150, 673
NlaIV	GGNNCC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	675
PfeI	GAWTC	1 cut(s)	281
PleI	GAGTC	2 cut(s)	15, 87
PpsI	GAGTC	2 cut(s)	15, 87
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	144
PsrI	GAACNNNNNNTAC	2 cut(s)	646, 678
RsaI	GTAC	1 cut(s)	754
RsaNI	GTAC	1 cut(s)	753
SaqAI	TTAA	1 cut(s)	329
Sau3AI	GATC	3 cut(s)	556, 574, 649
SchI	GAGTC	2 cut(s)	15, 87
SetI	ASST	6 cut(s)	134, 359, 422, 487, 525, 586
SfaNI	GCATC	2 cut(s)	410, 682
SfcI	CTRYAG	1 cut(s)	421
SmlI	CTYRAG	2 cut(s)	103, 288
SmoI	CTYRAG	2 cut(s)	103, 288
Sse9I	AATT	8 cut(s)	70, 331, 373, 499, 603, 687, 707, 729
SspMI	CTAG	1 cut(s)	641
TaaI	ACNGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	232
TasI	AATT	8 cut(s)	70, 331, 373, 499, 603, 687, 707, 729
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TspDTI	ATGAA	3 cut(s)	17, 112, 251
XapI	RAATTY	4 cut(s)	499, 603, 687, 707
XspI	CTAG	1 cut(s)	641
Zsp2I	ATGCAT	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.