Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001351.1

Orthogroup ID

OG0002165

Physical Location & Seq

Genomic Coordinates Reverse (-)

59000 .. 59913

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001351.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atggattctgctcaagtcccgcgtgttgcaatagatttaggagaggatattttaaattatgccaatatcctcaatggaagctcagggcgtaatgataatttgttttcaacatttggttatcctgcatctggtgatactattagctatagtcagaaccctattcgaagtcaagttggtgttcaaagtgaacccaaaaccacaaagagagctaaaagagccaagaatttctccattcaagaagacaaccttcttgtgtctgcctggctcaatactacccttgatccagcaataggaaatgatcaaaaaggtgttgctttttggaaaagaatttgggagtatttctatgctgagaagaactttgaactagagagtgatcgtaatcagggttctctcatgcatcgctggtctggaattcaactggatgtgaacaaattttgtggctattatgctgaaattgaaaggacaagggcaagtgaacttcagattgtggaagccaaacaaaagtttaggagggagcaagtatacaactttacatatgagcattgttggcatgtgttgaagttccacccaaaatggaacttggaactctctaggaaaaaaccaaagaaaactcatgctacgattcctgctacttcgtctcctatcactccatctgctaccccagatacaatagatttagctgatggcgatgttgaaggcaatgagtctccatgcttggagaggcctataggcaaaaaggctgccaagaccttggcaaggaaggcaaaagctaaagcgaaagtggaagcaacccaatctgaattaggagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

270

Amino Acids

30.47

Weight (kDa)

8.79

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09860
fragaria_vesca	FvH4_6g16300
malus_domestica	MD04G1093900.v1.1 MD12G1113600.v1.1
prunus_persica	Prupe.6G232500_v2.0.a1
pyrus_communis	pycom12g11250
rosa_chinensis	RchiOBHm_Chr2g0105031 RchiOBHm_Chr3g0470161 RchiOBHm_Chr7g0231991
rosa_laevigata	RLG00000014977
rosa_multiflora	Rmu_sc0001351.1_g000017 Rmu_sc0002091.1_g000013 Rmu_sc0010369.1_g000006 Rmu_sc0011511.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264040 Rroxscaffold_7G00161710
rosa_rugosa	Rorug01G0261200 Rorug03G0107500
rosa_samantha	Rh1AG240800 Rh2BG234200 Rh2BG234300 Rh2CG180700 Rh3AG156500 Rh3BG134000 Rh3BG180600 Rh3CG136400 Rh3CG136500 Rh3CG171400 Rh3DG135500 Rh3DG194300 Rh4CG167800 Rh4DG114400 Rh5BG427500 Rh5CG451200 Rh5DG441200 Rh6AG062200 Rh7CG438900 Rh7DG409600
rosa_wichuraiana	Rw0G008550 Rw3G014840 Rw3G014870 Rw6G005530 Rw6G036640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	522
AccII	CGCG	1 cut(s)	22
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	4 cut(s)	223, 327, 411, 431
AcuI	CTGAAG	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	128, 290, 756
AgsI	TTSAA	8 cut(s)	108, 182, 236, 362, 416, 458, 559, 695
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	5 cut(s)	81, 144, 209, 680, 770
AluI	AGCT	5 cut(s)	81, 144, 209, 680, 770
Alw26I	GTCTC	3 cut(s)	642, 711, 801
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	722
ApeKI	GCWGC	1 cut(s)	740
ApoI	RAATTY	4 cut(s)	223, 327, 411, 431
AsuHPI	GGTGA	1 cut(s)	143
AsuII	TTCGAA	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	727
BccI	CCATC	2 cut(s)	658, 677
BciT130I	CCWGG	1 cut(s)	262
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	3 cut(s)	642, 711, 801
BfaI	CTAG	2 cut(s)	365, 591
BfmI	CTRYAG	2 cut(s)	145, 726
BisI	GCNGC	1 cut(s)	741
BlsI	GCNGC	1 cut(s)	742
Bme1390I	CCNGG	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	2 cut(s)	134, 406
BpiI	GAAGAC	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	750
BsaXI	ACNNNNNCTCC	2 cut(s)	622, 652
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 290, 756
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	706
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	1 cut(s)	427
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	3 cut(s)	128, 290, 756
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	2 cut(s)	96, 339
BseNI	ACTGG	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	727
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	724
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	3 cut(s)	128, 290, 756
BsmAI	GTCTC	3 cut(s)	642, 711, 801
BsmBI	CGTCTC	1 cut(s)	642
BsmFI	GGGAC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	724
Bsp119I	TTCGAA	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	280, 298, 373
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	724
BspCNI	CTCAG	2 cut(s)	95, 340
BspFNI	CGCG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	275
BspT104I	TTCGAA	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	706
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	3 cut(s)	280, 298, 373
BssNAI	GTATAC	1 cut(s)	523
BssT1I	CCWWGG	1 cut(s)	750
Bst1107I	GTATAC	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	163
BstDEI	CTNAG	2 cut(s)	82, 348
BstENI	CCTNNNNNAGG	1 cut(s)	754
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	3 cut(s)	283, 301, 376
BstMAI	GTCTC	3 cut(s)	642, 711, 801
BstMBI	GATC	3 cut(s)	280, 298, 373
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 547, 761
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	2 cut(s)	145, 726
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	727
BstV2I	GAAGAC	1 cut(s)	246
BstXI	CCANNNNNNTGG	1 cut(s)	751
BstZ17I	GTATAC	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	724
BtgZI	GCGATG	2 cut(s)	383, 702
BtsCI	GGATG	1 cut(s)	427
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	4 cut(s)	394, 551, 614, 711
DdeI	CTNAG	2 cut(s)	82, 348
DpnI	GATC	3 cut(s)	282, 300, 375
DpnII	GATC	3 cut(s)	280, 298, 373
DraI	TTTAAA	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	464
EcoNI	CCTNNNNNAGG	1 cut(s)	754
EcoRI	GAATTC	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	750
EcoT22I	ATGCAT	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	750
Esp3I	CGTCTC	1 cut(s)	642
FaeI	CATG	4 cut(s)	397, 554, 617, 714
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	4 cut(s)	393, 550, 613, 710
FauI	CCCGC	1 cut(s)	27
FauNDI	CATATG	1 cut(s)	535
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	1 cut(s)	741
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	741
FspBI	CTAG	2 cut(s)	365, 591
GluI	GCNGC	1 cut(s)	741
HaeIII	GGCC	1 cut(s)	724
Hin1II	CATG	4 cut(s)	397, 554, 617, 714
HinfI	GANTC	3 cut(s)	5, 622, 704
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	4 cut(s)	188, 427, 476, 523
Hpy188I	TCNGA	3 cut(s)	153, 483, 799
Hpy188III	TCNNGA	2 cut(s)	236, 408
Hpy8I	GTNNAC	4 cut(s)	188, 427, 476, 523
HpyAV	CCTTC	3 cut(s)	257, 689, 754
HpyCH4V	TGCA	3 cut(s)	29, 125, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 547, 761
HpyF3I	CTNAG	2 cut(s)	82, 348
Hsp92II	CATG	4 cut(s)	397, 554, 617, 714
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	280, 298, 373
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	1 cut(s)	727
LweI	GCATC	2 cut(s)	134, 406
MaeI	CTAG	2 cut(s)	365, 591
MalI	GATC	3 cut(s)	282, 300, 375
MboI	GATC	3 cut(s)	280, 298, 373
MboII	GAAGA	2 cut(s)	251, 364
MluCI	AATT	8 cut(s)	55, 97, 223, 327, 411, 431, 453, 800
MlyI	GAGTC	1 cut(s)	713
MnlI	CCTC	4 cut(s)	37, 80, 504, 714
Mph1103I	ATGCAT	1 cut(s)	399
MseI	TTAA	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	3 cut(s)	215, 547, 761
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	3 cut(s)	280, 298, 373
NlaIII	CATG	4 cut(s)	397, 554, 617, 714
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	554
NspV	TTCGAA	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	724
PfeI	GAWTC	2 cut(s)	5, 622
PkrI	GCNGC	1 cut(s)	742
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PsrI	GAACNNNNNNTAC	2 cut(s)	370, 402
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	1 cut(s)	741
Sau3AI	GATC	3 cut(s)	280, 298, 373
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	1 cut(s)	262
SetI	ASST	8 cut(s)	83, 146, 211, 249, 310, 682, 752, 772
SfaNI	GCATC	2 cut(s)	134, 406
SfcI	CTRYAG	2 cut(s)	145, 726
SfuI	TTCGAA	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	8 cut(s)	55, 97, 223, 327, 411, 431, 453, 800
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	365, 591
StuI	AGGCCT	1 cut(s)	724
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	1 cut(s)	750
TaqI	TCGA	1 cut(s)	163
TasI	AATT	8 cut(s)	55, 97, 223, 327, 411, 431, 453, 800
TfiI	GAWTC	2 cut(s)	5, 622
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TseI	GCWGC	1 cut(s)	740
XagI	CCTNNNNNAGG	1 cut(s)	754
XapI	RAATTY	4 cut(s)	223, 327, 411, 431
XceI	RCATGY	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	2 cut(s)	365, 591
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.