AT3G21580

Cobalt transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002836
Physical Location & Seq
Reverse (-)
7601822 .. 7603899
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21580.1

Sequence Viewer

Length: 1176 bp
ATGAATCACTCCAATCTTGCCAATCCAACAGTCTCCCTCACCGTAACCCTAATCCCCAAACACCCAATTCGTCATCTCACATCTCCAATTCCTAACCGGAACTTTACAAACCCTAAGCTTCTCTTCCCGCTCCGGCTTAATGAGACTCCTTCCTCCTCTCTCGCCGCGAAAAGGGTTTTCATTGTCAGAGCCACCGTCGACGGAGACGGTAAAACCGGTAATTGGGTGAACCGGTTACCAATTCCAGGACTTGGAGCCGAAAACGTCTTCAGATTGATTTCAAGCGCCACCGGAAGTCCCATCGGACAATTCATATCGTCTCCTGTGACATTTCTCCACTCGGTGGATCCCAGAATCAAATTGGTATGGCTATTAACTCTAGTAGTTCTTCCAGCAAGAGCAAATCTAGTTGTGCGTTTAGGACTTGTTCTATGCACAGCTCTTTTGTCAATCCTTGTTCTCCCAAGACAAGTTTGGATAGATCAATTGGCGAGAGTGTCGCTTCTTTCGGGTATTCTCTTCATAACATTGGGGCTAGGTTCAGATGGTGCACCTCCAATGCTTCAATCAAGAACACCACCATCTTCAATCACAAGCTTGCCTAATCTTCCCATGTCTTTAAGCGGTTATTCGTACATGTTACTGAAGCTTGGTCCTTTGCAATTCACAAGGAAAGGTTTGTCTGTTGGAAGCACAGCCGCATGCTTAACCTTTATTATCTTCCAAAGTGCTAGTATTTGCCTTGCAACAACAACACCAGAGCAACTTGCACTAGCTCTACGTTGGTTCTTGTTCCCATTGACATATATTGGTGTTCCAGTCAGTGAAATTATCCTCACGCTACTGCTTTCACTGAGATTCATTAATTTGGTTTTCGATGAGGTCCGAAGTGTTTCACTGGGAATTGTATCGCGAAGAGTAAACTGGCAGCAGCTTACTGTTCTGGAGACACTTGATATTTTCGCGTCATTCATACGCCGCATCTTCAAGAATATATTTCGTCATGCCGAACAAATATCACAGGCCATGATTGTTAGAGGCTTCAGAGGAGAGAGCAGTAGCCACAAGATCTACTTCTTCTCTGGCTCTTCGAATAAGTTTGCAGATTTTGCATCAGTTTTGTGTTTAATCGGTGTAATCTCAACCGCACTCTTGTCTGAATACTTTCTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

391

Amino Acids

42.94

Weight (kDa)

10.5

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 110 - 352 6.1e-19 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 251, 343
AccBSI CCGCTC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 198
AccII CGCG 3 cut(s) 167, 913, 965
AciI CCGC 6 cut(s) 128, 165, 624, 699, 979, 1146
AclWI GGATC 2 cut(s) 341, 354
AcuI CTGAAG 3 cut(s) 253, 665, 1027
AdeI CACNNNGTG 1 cut(s) 343
AfaI GTAC 1 cut(s) 635
AfiI CCNNNNNNNGG 5 cut(s) 171, 222, 245, 251, 343
AflIII ACRYGT 1 cut(s) 636
AgeI ACCGGT 2 cut(s) 215, 231
AgsI TTSAA 4 cut(s) 282, 566, 588, 988
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 6 cut(s) 118, 440, 597, 649, 776, 934
AluI AGCT 6 cut(s) 118, 440, 597, 649, 776, 934
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 5 cut(s) 37, 137, 198, 324, 941
Alw44I GTGCAC 1 cut(s) 549
AlwI GGATC 2 cut(s) 341, 354
AoxI GGCC 1 cut(s) 1023
ApaLI GTGCAC 1 cut(s) 549
ApeKI GCWGC 2 cut(s) 928, 931
AseI ATTAAT 1 cut(s) 864
AsiGI ACCGGT 2 cut(s) 215, 231
Asp700I GAANNNNTTC 2 cut(s) 892, 1164
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 653, 883
AsuHPI GGTGA 2 cut(s) 31, 238
AsuII TTCGAA 1 cut(s) 1091
AvaII GGWCC 2 cut(s) 653, 883
BaeGI GKGCMC 1 cut(s) 553
BamHI GGATCC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 2 cut(s) 940, 943
BccI CCATC 3 cut(s) 308, 539, 589
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 5 cut(s) 37, 137, 198, 324, 941
BfaI CTAG 5 cut(s) 380, 407, 536, 732, 773
BfoI RGCGCY 1 cut(s) 288
BglII AGATCT 1 cut(s) 1068
BisI GCNGC 5 cut(s) 165, 699, 929, 932, 979
BlsI GCNGC 5 cut(s) 166, 700, 930, 933, 980
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 2 cut(s) 653, 883
BmgT120I GGNCC 2 cut(s) 653, 883
BmiI GGNNCC 2 cut(s) 256, 348
BmrFI CCNGG 1 cut(s) 246
BmrI ACTGGG 1 cut(s) 908
BmsI GCATC 2 cut(s) 990, 1121
BmuI ACTGGG 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 965
Bpu10I CCTNAGC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 1091
BsaWI WCCGGW 4 cut(s) 96, 215, 231, 290
Bsc4I CCNNNNNNNGG 5 cut(s) 171, 222, 245, 251, 343
Bse118I RCCGGY 2 cut(s) 215, 231
Bse1I ACTGG 3 cut(s) 818, 903, 929
BseBI CCWGG 1 cut(s) 246
BseLI CCNNNNNNNGG 5 cut(s) 171, 222, 245, 251, 343
BseMII CTCAG 1 cut(s) 845
BseNI ACTGG 3 cut(s) 818, 903, 929
BseRI GAGGAG 2 cut(s) 145, 1062
BseSI GKGCMC 1 cut(s) 553
BseXI GCAGC 2 cut(s) 940, 943
Bsh1236I CGCG 3 cut(s) 167, 913, 965
BshFI GGCC 1 cut(s) 1025
BshTI ACCGGT 2 cut(s) 215, 231
BsiHKAI GWGCWC 1 cut(s) 553
BsiSI CCGG 5 cut(s) 97, 133, 216, 232, 291
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 5 cut(s) 171, 222, 245, 251, 343
BsmAI GTCTC 5 cut(s) 37, 137, 198, 324, 941
BsmBI CGTCTC 2 cut(s) 198, 324
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 1 cut(s) 1025
Bsp119I TTCGAA 1 cut(s) 1091
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 3 cut(s) 346, 481, 1068
Bsp68I TCGCGA 1 cut(s) 913
BspACI CCGC 6 cut(s) 128, 165, 624, 699, 979, 1146
BspANI GGCC 1 cut(s) 1025
BspCNI CTCAG 1 cut(s) 846
BspFNI CGCG 3 cut(s) 167, 913, 965
BspLI GGNNCC 2 cut(s) 256, 348
BspPI GGATC 2 cut(s) 341, 354
BspQI GCTCTTC 1 cut(s) 1093
BspT104I TTCGAA 1 cut(s) 1091
BsrBI CCGCTC 1 cut(s) 130
BsrFI RCCGGY 2 cut(s) 215, 231
BsrI ACTGG 3 cut(s) 818, 903, 929
BssAI RCCGGY 2 cut(s) 215, 231
BssMI GATC 3 cut(s) 346, 481, 1068
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 5 cut(s) 31, 43, 196, 209, 940
Bst6I CTCTTC 4 cut(s) 128, 524, 910, 1093
BstAPI GCANNNNNTGC 1 cut(s) 1109
BstBI TTCGAA 1 cut(s) 1091
BstC8I GCNNGC 2 cut(s) 599, 703
BstDEI CTNAG 2 cut(s) 114, 854
BstEII GGTNACC 1 cut(s) 234
BstFNI CGCG 3 cut(s) 167, 913, 965
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 3 cut(s) 349, 484, 1071
BstMAI GTCTC 5 cut(s) 37, 137, 198, 324, 941
BstMBI GATC 3 cut(s) 346, 481, 1068
BstMWI GCNNNNNNNGC 1 cut(s) 1109
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 2 cut(s) 640, 705
BstPI GGTNACC 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 553
BstUI CGCG 3 cut(s) 167, 913, 965
BstV1I GCAGC 2 cut(s) 940, 943
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 2 cut(s) 346, 1068
BstYI RGATCY 2 cut(s) 346, 1068
BsuRI GGCC 1 cut(s) 1025
BtsIMutI CAGTG 3 cut(s) 829, 851, 896
BtuMI TCGCGA 1 cut(s) 913
Cac8I GCNNGC 2 cut(s) 599, 703
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 2 cut(s) 215, 231
Cfr13I GGNCC 2 cut(s) 653, 883
CseI GACGC 1 cut(s) 954
Csp6I GTAC 1 cut(s) 634
CspAI ACCGGT 2 cut(s) 215, 231
CviAII CATG 5 cut(s) 613, 637, 702, 1004, 1027
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 2 cut(s) 114, 854
DpnI GATC 3 cut(s) 348, 483, 1070
DpnII GATC 3 cut(s) 346, 481, 1068
DraIII CACNNNGTG 1 cut(s) 343
Eam1104I CTCTTC 4 cut(s) 128, 524, 910, 1093
EarI CTCTTC 4 cut(s) 128, 524, 910, 1093
Eco47I GGWCC 2 cut(s) 653, 883
Eco57I CTGAAG 3 cut(s) 253, 665, 1027
Eco91I GGTNACC 1 cut(s) 234
EcoO65I GGTNACC 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 244
Esp3I CGTCTC 2 cut(s) 198, 324
FaeI CATG 5 cut(s) 616, 640, 705, 1007, 1030
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 1058, 1090
FaqI GGGAC 1 cut(s) 282
FatI CATG 5 cut(s) 612, 636, 701, 1003, 1026
FauI CCCGC 1 cut(s) 135
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 5 cut(s) 165, 699, 929, 932, 979
Fsp4HI GCNGC 5 cut(s) 165, 699, 929, 932, 979
FspBI CTAG 5 cut(s) 380, 407, 536, 732, 773
GlaI GCGC 1 cut(s) 286
GluI GCNGC 5 cut(s) 165, 699, 929, 932, 979
GsuI CTGGAG 1 cut(s) 965
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 1 cut(s) 1025
HapII CCGG 5 cut(s) 97, 133, 216, 232, 291
HgaI GACGC 1 cut(s) 954
HhaI GCGC 1 cut(s) 287
Hin1II CATG 5 cut(s) 616, 640, 705, 1007, 1030
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 3 cut(s) 116, 595, 647
HinfI GANTC 4 cut(s) 4, 145, 354, 858
HpaII CCGG 5 cut(s) 97, 133, 216, 232, 291
HphI GGTGA 2 cut(s) 31, 238
Hpy166II GTNNAC 4 cut(s) 199, 229, 551, 922
Hpy188I TCNGA 7 cut(s) 188, 272, 305, 544, 887, 1046, 1159
Hpy188III TCNNGA 4 cut(s) 570, 912, 944, 988
Hpy8I GTNNAC 4 cut(s) 199, 229, 551, 922
Hpy99I CGWCG 2 cut(s) 200, 203
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 5 cut(s) 31, 43, 196, 209, 940
HpyCH4IV ACGT 2 cut(s) 264, 781
HpyCH4V TGCA 7 cut(s) 435, 551, 661, 746, 770, 1103, 1112
HpyF10VI GCNNNNNNNGC 1 cut(s) 1109
HpyF3I CTNAG 2 cut(s) 114, 854
HpySE526I ACGT 2 cut(s) 264, 781
Hsp92II CATG 5 cut(s) 616, 640, 705, 1007, 1030
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 3 cut(s) 346, 481, 1068
LguI GCTCTTC 1 cut(s) 1093
LmnI GCTCC 2 cut(s) 135, 254
Lsp1109I GCAGC 2 cut(s) 940, 943
LweI GCATC 2 cut(s) 990, 1121
MaeI CTAG 5 cut(s) 380, 407, 536, 732, 773
MaeII ACGT 2 cut(s) 264, 781
MaeIII GTNAC 4 cut(s) 43, 234, 325, 639
MalI GATC 3 cut(s) 348, 483, 1070
MbiI CCGCTC 1 cut(s) 130
MboI GATC 3 cut(s) 346, 481, 1068
MfeI CAATTG 1 cut(s) 485
MflI RGATCY 2 cut(s) 346, 1068
MhlI GDGCHC 1 cut(s) 553
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 50, 667
MnlI CCTC 8 cut(s) 47, 163, 166, 564, 845, 874, 1031, 1040
MroXI GAANNNNTTC 2 cut(s) 892, 1164
MseI TTAA 6 cut(s) 138, 374, 620, 707, 864, 1127
MspI CCGG 5 cut(s) 97, 133, 216, 232, 291
MspR9I CCNGG 1 cut(s) 246
MunI CAATTG 1 cut(s) 485
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 3 cut(s) 167, 913, 965
MwoI GCNNNNNNNGC 1 cut(s) 1109
NdeII GATC 3 cut(s) 346, 481, 1068
NlaIII CATG 5 cut(s) 616, 640, 705, 1007, 1030
NlaIV GGNNCC 2 cut(s) 256, 348
NmuCI GTSAC 1 cut(s) 325
NruI TCGCGA 1 cut(s) 913
NspI RCATGY 2 cut(s) 640, 705
NspV TTCGAA 1 cut(s) 1091
PaeI GCATGC 1 cut(s) 705
PciI ACATGT 1 cut(s) 636
PciSI GCTCTTC 1 cut(s) 1093
PdmI GAANNNNTTC 2 cut(s) 892, 1164
PfeI GAWTC 3 cut(s) 4, 354, 858
PflMI CCANNNNNTGG 2 cut(s) 251, 343
PfoI TCCNGGA 1 cut(s) 244
PinAI ACCGGT 2 cut(s) 215, 231
PkrI GCNGC 5 cut(s) 166, 700, 930, 933, 980
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PscI ACATGT 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 864
Psp6I CCWGG 1 cut(s) 244
PspEI GGTNACC 1 cut(s) 234
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 256, 348
PspPI GGNCC 2 cut(s) 653, 883
PsuI RGATCY 2 cut(s) 346, 1068
RruI TCGCGA 1 cut(s) 913
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
SalI GTCGAC 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 1093
SaqAI TTAA 6 cut(s) 138, 374, 620, 707, 864, 1127
SatI GCNGC 5 cut(s) 165, 699, 929, 932, 979
Sau3AI GATC 3 cut(s) 346, 481, 1068
Sau96I GGNCC 2 cut(s) 653, 883
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 2 cut(s) 990, 1121
SfuI TTCGAA 1 cut(s) 1091
SgrDI CGTCGACG 1 cut(s) 197
SinI GGWCC 2 cut(s) 653, 883
SphI GCATGC 1 cut(s) 705
SsiI CCGC 6 cut(s) 128, 165, 624, 699, 979, 1146
SspMI CTAG 5 cut(s) 380, 407, 536, 732, 773
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 5 cut(s) 31, 43, 196, 209, 940
TaiI ACGT 2 cut(s) 267, 784
TaqI TCGA 3 cut(s) 198, 876, 1091
TauI GCSGC 3 cut(s) 167, 701, 981
TfiI GAWTC 3 cut(s) 4, 354, 858
Tru1I TTAA 6 cut(s) 138, 374, 620, 707, 864, 1127
Tru9I TTAA 6 cut(s) 138, 374, 620, 707, 864, 1127
TscAI CASTG 3 cut(s) 829, 858, 903
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 2 cut(s) 928, 931
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 6 cut(s) 17, 169, 301, 511, 850, 961
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 3 cut(s) 829, 858, 903
Van91I CCANNNNNTGG 2 cut(s) 251, 343
VneI GTGCAC 1 cut(s) 549
VpaK11BI GGWCC 2 cut(s) 653, 883
VspI ATTAAT 1 cut(s) 864
XceI RCATGY 2 cut(s) 640, 705
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 471
XmiI GTMKAC 1 cut(s) 198
XmnI GAANNNNTTC 2 cut(s) 892, 1164
XspI CTAG 5 cut(s) 380, 407, 536, 732, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.