Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002836

Physical Location & Seq

Genomic Coordinates Forward (+)

70133316 .. 70135371

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGTAATGCTTGGTTTTTGATTCTATTTGGTGGGTTTGGTCTAATTTTGGTTTTGCAGGTTTGGCTTTTGGCTCTAGTTGTGTTACCAGCGAGGTCACACATAATACTTCATTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGCAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGTTGCTTGTTTAACCTTTACGGTTTTCCAAAGTGCGAGCCTTTGCCAAACAACCACAACCCCTGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGGTAAAGCCTCTATTGCATTTGTATGGGAAGATTTCATTGTTCATTTTTTTTCCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiQ

Protein Analysis

237

Amino Acids

26.15

Weight (kDa)

7.85

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiQ	PF02361	22 - 216	1.2e-06	Cobalt transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21580
fragaria_vesca	FvH4_4g14170 FvH4_4g14170 FvH4_4g14170 FvH4_4g14170
malus_domestica	MD13G1180000.v1.1
prunus_persica	Prupe.1G148500_v2.0.a1
pyrus_communis	pycom13g15550
rosa_chinensis	RchiOBHm_Chr1g0356001 RchiOBHm_Chr2g0086241 RchiOBHm_Chr4g0419051 RchiOBHm_Chr5g0045591 RchiOBHm_Chr5g0064291
rosa_laevigata	RLG00000007829 RLG00000023906
rosa_multiflora	Rmu_sc0000048.1_g000009 Rmu_sc0000831.1_g000030 Rmu_sc0000913.1_g000005 Rmu_sc0015926.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362110 Rroxscaffold_7G00165560
rosa_rugosa	Rorug04G0095000 Rorug04G0156700 Rorug04G0156800 Rorug04G0156900
rosa_samantha	Rh1DG103700 Rh2CG432800 Rh2CG585000 Rh4AG218300 Rh4BG219800 Rh4CG230200 Rh4DG216800 Rh5BG312800 Rh5DG323400 Rh7BG246100 Rh7CG235700 Rh7CG310900
rosa_wichuraiana	Rw4G018660 Rw5G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	49
AciI	CCGC	1 cut(s)	478
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	135
AcuI	CTGAAG	2 cut(s)	477, 543
AfiI	CCNNNNNNNGG	1 cut(s)	480
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw26I	GTCTC	2 cut(s)	157, 638
AlwI	GGATC	1 cut(s)	186
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	137
BccI	CCATC	3 cut(s)	169, 236, 647
BcoDI	GTCTC	2 cut(s)	157, 638
BfaI	CTAG	4 cut(s)	77, 227, 347, 712
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmsI	GCATC	1 cut(s)	320
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 292, 501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse1I	ACTGG	2 cut(s)	515, 626
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseNI	ACTGG	2 cut(s)	515, 626
BseRI	GAGGAG	2 cut(s)	264, 267
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	2 cut(s)	157, 638
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	478
BspANI	GGCC	1 cut(s)	137
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	515, 626
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	4 cut(s)	360, 394, 415, 630
Bst6I	CTCTTC	1 cut(s)	184
BstC8I	GCNNGC	3 cut(s)	322, 388, 430
BstF5I	GGATG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	2 cut(s)	157, 638
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 245, 317, 668
BstNSI	RCATGY	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	522
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	322, 388, 430
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	350
CviAII	CATG	2 cut(s)	167, 541
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	2 cut(s)	477, 543
FaeI	CATG	2 cut(s)	170, 544
FaiI	YATR	8 cut(s)	104, 151, 168, 224, 331, 488, 542, 679
FalI	AAGNNNNNCTT	4 cut(s)	181, 213, 516, 548
FatI	CATG	2 cut(s)	166, 540
FokI	GGATG	1 cut(s)	187
FspBI	CTAG	4 cut(s)	77, 227, 347, 712
GlaI	GCGC	1 cut(s)	247
GsaI	CCCAGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	170, 544
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HinfI	GANTC	1 cut(s)	22
HpaI	GTTAAC	1 cut(s)	633
Hpy166II	GTNNAC	3 cut(s)	130, 363, 633
Hpy188III	TCNNGA	1 cut(s)	207
Hpy8I	GTNNAC	3 cut(s)	130, 363, 633
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	4 cut(s)	360, 394, 415, 630
HpyCH4V	TGCA	7 cut(s)	58, 239, 284, 311, 467, 593, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 245, 317, 668
Hsp92II	CATG	2 cut(s)	170, 544
HspAI	GCGC	1 cut(s)	246
KspAI	GTTAAC	1 cut(s)	633
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	495
LweI	GCATC	1 cut(s)	320
MaeI	CTAG	4 cut(s)	77, 227, 347, 712
MaeIII	GTNAC	2 cut(s)	84, 96
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	4 cut(s)	201, 296, 470, 695
MfeI	CAATTG	2 cut(s)	182, 648
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	5 cut(s)	45, 182, 201, 336, 648
MluNI	TGGCCA	1 cut(s)	137
MnlI	CCTC	6 cut(s)	87, 285, 288, 546, 571, 673
Mox20I	TGGCCA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	528
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	5 cut(s)	200, 335, 342, 404, 632
MslI	CAYNNNNRTG	1 cut(s)	676
Msp20I	TGGCCA	1 cut(s)	137
MunI	CAATTG	2 cut(s)	182, 648
MwoI	GCNNNNNNNGC	4 cut(s)	64, 245, 317, 668
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	170, 544
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	350
PstNI	CAGNNNCTG	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	676
SaqAI	TTAA	5 cut(s)	200, 335, 342, 404, 632
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	350
SetI	ASST	6 cut(s)	63, 98, 348, 410, 557, 582
SfaNI	GCATC	1 cut(s)	320
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	676
Sse9I	AATT	5 cut(s)	45, 182, 201, 336, 648
SsiI	CCGC	1 cut(s)	478
SspMI	CTAG	4 cut(s)	77, 227, 347, 712
TaaI	ACNGT	4 cut(s)	360, 394, 415, 630
TasI	AATT	5 cut(s)	45, 182, 201, 336, 648
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	5 cut(s)	200, 335, 342, 404, 632
Tru9I	TTAA	5 cut(s)	200, 335, 342, 404, 632
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	5 cut(s)	101, 208, 547, 679, 686
TspRI	CASTG	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	350
XceI	RCATGY	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	4 cut(s)	77, 227, 347, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.