Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002836

Physical Location & Seq

Genomic Coordinates Forward (+)

27374594 .. 27376638

Gene Structure 2045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0156800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCCCAATGAGTCAAAAACCCTAGACTGGTCTAACCGACCCGACCCGGTAAAGTTCTTATATATTTCACTTGAGGCCCTCTCAGAATCTAAAACTCCCACTCTACTATCAGTCTTCTCATTTATCCGAAGCTTTCAAATTTTCCGACATGGTAATGTTAGCAGTACTAGCAGCAGCAACAACAACACCACCTTTCGCTGCGCCCAATTCGCTAACTTGAGCACTGGGCCCACCATGGCAAGGTGCCTCACTGGATGTCTGGCATCACCTTCAAGCTTGCTATGGCCAAAGAAACAGAGAGAATGCAAAAGGAAAGCTGGTCCAAGTAGTATCTGTGCCAAATTTGAACTAAAGCCTCCTCCATATCCACTGGATGCGCTAGAGCCGCATATGAGCAAGGAGACTCTGGAGTATCACTGGGGGAAGCACCATAGGGGTTATGTGGATAACCTAAACAAGCAAATCAAAGGAAATGAGCTAGATGAATTGTCGTTGGAAGATATTATACTTGCTACACACAACAACGGAGATTTGCTTCCACCTTTCAACAATGCAGCACAGATCTGGAACCATGACTTCTTCTGGGAGTCCATGAAACCAGGTGGTGGCGGAAGGCCATCCGGGGAACTTCTAGAACTAATTAATAGAGACTTTGGTTCTTTTGAGAGATTCATTGATGATATAAGGTTGGCTGCAGCTACACAGTTTGGTTCTGGTTGGGCTTGGCTTGCGTATAAAGCAAATAGACTCGATGTTGAAAATGCAGTAAATCCTAATCCGTTGTACGAAGACAAAAGGCTTGTAGTGGTGAAGAGTCCTAATGCAGTAAACCCCCTTACGTGGGATTATTCTCCGCTCCTTACCATCGATGTTTGGGAGCATGCTTACTACCTCGATTTTCAGAACCGGCGAGCTGATTACGTATCAATCTTTTTGAAGAAACTTGTTTCATGGGAAGCAGTCAGTTTTAGACTTGAAATTGCAAAAGCTCGAGCAGTTGAAAGAGAGGAAGAAGAAGAAAAGAGGAAAAGAGAAGAGGAGGAGAAATCATCAGATGGCGAAGTTGCAGAGATTTATGTGGACAACAAGAGTGATGACTCGGAGGCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiQ

Protein Analysis

370

Amino Acids

42.23

Weight (kDa)

5.47

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	114 - 198	2.2e-24	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	206 - 322	2.7e-29	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21580
fragaria_vesca	FvH4_4g14170 FvH4_4g14170 FvH4_4g14170 FvH4_4g14170
malus_domestica	MD13G1180000.v1.1
prunus_persica	Prupe.1G148500_v2.0.a1
pyrus_communis	pycom13g15550
rosa_chinensis	RchiOBHm_Chr1g0356001 RchiOBHm_Chr2g0086241 RchiOBHm_Chr4g0419051 RchiOBHm_Chr5g0045591 RchiOBHm_Chr5g0064291
rosa_laevigata	RLG00000007829 RLG00000023906
rosa_multiflora	Rmu_sc0000048.1_g000009 Rmu_sc0000831.1_g000030 Rmu_sc0000913.1_g000005 Rmu_sc0015926.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362110 Rroxscaffold_7G00165560
rosa_rugosa	Rorug04G0095000 Rorug04G0156700 Rorug04G0156800 Rorug04G0156900
rosa_samantha	Rh1DG103700 Rh2CG432800 Rh2CG585000 Rh4AG218300 Rh4BG219800 Rh4CG230200 Rh4DG216800 Rh5BG312800 Rh5DG323400 Rh7BG246100 Rh7CG235700 Rh7CG310900
rosa_wichuraiana	Rw4G018660 Rw5G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	856
AciI	CCGC	3 cut(s)	386, 609, 854
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	2 cut(s)	138, 341
AfaI	GTAC	2 cut(s)	166, 785
AfiI	CCNNNNNNNGG	5 cut(s)	27, 240, 605, 840, 841
AgsI	TTSAA	8 cut(s)	137, 273, 347, 547, 758, 937, 977, 1001
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	7 cut(s)	132, 276, 317, 478, 698, 914, 989
AluI	AGCT	7 cut(s)	132, 276, 317, 478, 698, 914, 989
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	395, 642
Ama87I	CYCGRG	1 cut(s)	990
AoxI	GGCC	5 cut(s)	75, 227, 284, 614, 1104
ApaI	GGGCCC	1 cut(s)	231
ApeKI	GCWGC	6 cut(s)	171, 174, 198, 554, 692, 695
ApoI	RAATTY	2 cut(s)	138, 341
AseI	ATTAAT	1 cut(s)	642
AspLEI	GCGC	2 cut(s)	203, 379
AspS9I	GGNCC	4 cut(s)	76, 227, 228, 320
AsuC2I	CCSGG	2 cut(s)	47, 622
AsuHPI	GGTGA	2 cut(s)	258, 820
AvaI	CYCGRG	1 cut(s)	990
AvaII	GGWCC	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	231
BalI	TGGCCA	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	231
BarI	GAAGNNNNNNTAC	2 cut(s)	489, 521
BbsI	GAAGAC	2 cut(s)	106, 795
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	6 cut(s)	183, 185, 186, 566, 679, 707
BccI	CCATC	3 cut(s)	625, 872, 1049
BciT130I	CCWGG	1 cut(s)	600
BcnI	CCSGG	2 cut(s)	47, 622
BcoDI	GTCTC	2 cut(s)	395, 642
BfaI	CTAG	5 cut(s)	23, 168, 380, 479, 632
BfmI	CTRYAG	1 cut(s)	693
BglII	AGATCT	1 cut(s)	561
BisI	GCNGC	7 cut(s)	172, 175, 199, 386, 555, 693, 696
BlsI	GCNGC	7 cut(s)	173, 176, 200, 387, 556, 694, 697
BmcAI	AGTACT	1 cut(s)	166
Bme1390I	CCNGG	3 cut(s)	47, 600, 622
Bme18I	GGWCC	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	990
BmgT120I	GGNCC	4 cut(s)	76, 227, 228, 320
BmiI	GGNNCC	3 cut(s)	229, 245, 569
BmrFI	CCNGG	3 cut(s)	47, 600, 622
BmrI	ACTGGG	2 cut(s)	234, 427
BmsI	GCATC	2 cut(s)	272, 364
BmuI	ACTGGG	2 cut(s)	234, 427
BpiI	GAAGAC	2 cut(s)	106, 795
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	428
BpuEI	CTTGAG	2 cut(s)	92, 238
BpuMI	CCSGG	2 cut(s)	47, 622
Bsa29I	ATCGAT	1 cut(s)	867
BsaAI	YACGTR	2 cut(s)	840, 922
BsaJI	CCNNGG	2 cut(s)	234, 621
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 240, 605, 840, 841
Bse118I	RCCGGY	1 cut(s)	906
Bse1I	ACTGG	5 cut(s)	32, 229, 256, 375, 422
BseBI	CCWGG	1 cut(s)	600
BseCI	ATCGAT	1 cut(s)	867
BseDI	CCNNGG	2 cut(s)	234, 621
BseGI	GGATG	3 cut(s)	260, 379, 617
BseLI	CCNNNNNNNGG	5 cut(s)	27, 240, 605, 840, 841
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	5 cut(s)	32, 229, 256, 375, 422
BseRI	GAGGAG	3 cut(s)	348, 1052, 1055
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	6 cut(s)	183, 185, 186, 566, 679, 707
BshFI	GGCC	5 cut(s)	77, 229, 286, 616, 1106
BshNI	GGYRCC	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	867
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	990
BsiSI	CCGG	3 cut(s)	47, 621, 907
BslI	CCNNNNNNNGG	5 cut(s)	27, 240, 605, 840, 841
BsmAI	GTCTC	2 cut(s)	395, 642
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	5 cut(s)	77, 229, 286, 616, 1106
BsoBI	CYCGRG	1 cut(s)	990
Bsp120I	GGGCCC	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	224, 231
Bsp143I	GATC	1 cut(s)	561
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	3 cut(s)	386, 609, 854
BspANI	GGCC	5 cut(s)	77, 229, 286, 616, 1106
BspCNI	CTCAG	1 cut(s)	95
BspDI	ATCGAT	1 cut(s)	867
BspLI	GGNNCC	3 cut(s)	229, 245, 569
BspMAI	CTGCAG	1 cut(s)	697
BspT107I	GGYRCC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	856
BsrFI	RCCGGY	1 cut(s)	906
BsrI	ACTGG	5 cut(s)	32, 229, 256, 375, 422
BssAI	RCCGGY	1 cut(s)	906
BssECI	CCNNGG	2 cut(s)	234, 621
BssMI	GATC	1 cut(s)	561
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	705
Bst6I	CTCTTC	2 cut(s)	806, 1029
BstBAI	YACGTR	2 cut(s)	840, 922
BstC8I	GCNNGC	4 cut(s)	278, 729, 882, 912
BstDEI	CTNAG	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	3 cut(s)	260, 379, 617
BstHHI	GCGC	2 cut(s)	203, 379
BstKTI	GATC	1 cut(s)	564
BstMAI	GTCTC	2 cut(s)	395, 642
BstMBI	GATC	1 cut(s)	561
BstMWI	GCNNNNNNNGC	5 cut(s)	168, 209, 385, 728, 737
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	1 cut(s)	884
BstSCI	CCNGG	3 cut(s)	45, 598, 620
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	231
BstSNI	TACGTA	1 cut(s)	922
BstV1I	GCAGC	6 cut(s)	183, 185, 186, 566, 679, 707
BstV2I	GAAGAC	2 cut(s)	106, 795
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
Bsu15I	ATCGAT	1 cut(s)	867
BsuRI	GGCC	5 cut(s)	77, 229, 286, 616, 1106
BsuTUI	ATCGAT	1 cut(s)	867
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	260, 379, 617
BtsIMutI	CAGTG	4 cut(s)	222, 249, 368, 415
Cac8I	GCNNGC	4 cut(s)	278, 729, 882, 912
CfoI	GCGC	2 cut(s)	203, 379
Cfr10I	RCCGGY	1 cut(s)	906
Cfr13I	GGNCC	4 cut(s)	76, 227, 228, 320
ClaI	ATCGAT	1 cut(s)	867
CsiI	ACCWGGT	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	165, 784
CviAII	CATG	6 cut(s)	149, 235, 572, 592, 881, 951
CviQI	GTAC	2 cut(s)	165, 784
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	1 cut(s)	563
DpnII	GATC	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	806, 1029
EarI	CTCTTC	2 cut(s)	806, 1029
EciI	GGCGGA	1 cut(s)	624
Eco105I	TACGTA	1 cut(s)	922
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	990
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	6 cut(s)	152, 238, 575, 595, 884, 954
FatI	CATG	6 cut(s)	148, 234, 571, 591, 880, 950
FauNDI	CATATG	1 cut(s)	390
Fnu4HI	GCNGC	7 cut(s)	172, 175, 199, 386, 555, 693, 696
FokI	GGATG	3 cut(s)	267, 386, 604
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	7 cut(s)	172, 175, 199, 386, 555, 693, 696
FspBI	CTAG	5 cut(s)	23, 168, 380, 479, 632
GlaI	GCGC	2 cut(s)	202, 378
GluI	GCNGC	7 cut(s)	172, 175, 199, 386, 555, 693, 696
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	5 cut(s)	77, 229, 286, 616, 1106
HapII	CCGG	3 cut(s)	47, 621, 907
HhaI	GCGC	2 cut(s)	203, 379
Hin1II	CATG	6 cut(s)	152, 238, 575, 595, 884, 954
Hin6I	GCGC	2 cut(s)	201, 377
HinP1I	GCGC	2 cut(s)	201, 377
HindIII	AAGCTT	2 cut(s)	130, 274
HinfI	GANTC	8 cut(s)	11, 86, 403, 587, 669, 747, 814, 1097
HpaII	CCGG	3 cut(s)	47, 621, 907
HphI	GGTGA	2 cut(s)	258, 820
Hpy166II	GTNNAC	2 cut(s)	829, 1081
Hpy188I	TCNGA	6 cut(s)	85, 128, 146, 903, 1054, 1102
Hpy188III	TCNNGA	3 cut(s)	407, 565, 632
Hpy8I	GTNNAC	2 cut(s)	829, 1081
HpyAV	CCTTC	2 cut(s)	279, 606
HpyCH4III	ACNGT	1 cut(s)	705
HpyCH4IV	ACGT	2 cut(s)	839, 921
HpyCH4V	TGCA	7 cut(s)	306, 554, 695, 764, 824, 983, 1067
HpyF10VI	GCNNNNNNNGC	5 cut(s)	168, 209, 385, 728, 737
HpyF3I	CTNAG	1 cut(s)	82
HpySE526I	ACGT	2 cut(s)	839, 921
Hsp92II	CATG	6 cut(s)	152, 238, 575, 595, 884, 954
HspAI	GCGC	2 cut(s)	201, 377
Kzo9I	GATC	1 cut(s)	561
LmnI	GCTCC	2 cut(s)	861, 877
Lsp1109I	GCAGC	6 cut(s)	183, 185, 186, 566, 679, 707
LweI	GCATC	2 cut(s)	272, 364
MabI	ACCWGGT	1 cut(s)	598
MaeI	CTAG	5 cut(s)	23, 168, 380, 479, 632
MaeII	ACGT	2 cut(s)	839, 921
MalI	GATC	1 cut(s)	563
MbiI	CCGCTC	1 cut(s)	856
MboI	GATC	1 cut(s)	561
MflI	RGATCY	1 cut(s)	561
MhlI	GDGCHC	2 cut(s)	224, 231
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	6 cut(s)	138, 206, 341, 485, 639, 978
MluNI	TGGCCA	1 cut(s)	286
MlyI	GAGTC	6 cut(s)	20, 397, 596, 741, 823, 1091
MmeI	TCCRAC	2 cut(s)	169, 474
Mox20I	TGGCCA	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	1 cut(s)	642
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	286
MspI	CCGG	3 cut(s)	47, 621, 907
MspR9I	CCNGG	3 cut(s)	47, 600, 622
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	5 cut(s)	168, 209, 385, 728, 737
NciI	CCSGG	2 cut(s)	47, 622
NcoI	CCATGG	1 cut(s)	234
NdeI	CATATG	1 cut(s)	390
NdeII	GATC	1 cut(s)	561
NlaIII	CATG	6 cut(s)	152, 238, 575, 595, 884, 954
NlaIV	GGNNCC	3 cut(s)	229, 245, 569
NspI	RCATGY	1 cut(s)	884
PaeI	GCATGC	1 cut(s)	884
PaeR7I	CTCGAG	1 cut(s)	990
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	86, 669
PflMI	CCANNNNNTGG	1 cut(s)	605
PkrI	GCNGC	7 cut(s)	173, 176, 200, 387, 556, 694, 697
PleI	GAGTC	6 cut(s)	19, 397, 595, 741, 822, 1091
PpsI	GAGTC	6 cut(s)	19, 397, 595, 741, 822, 1091
Ppu21I	YACGTR	2 cut(s)	840, 922
PshBI	ATTAAT	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	3 cut(s)	229, 245, 569
PspOMI	GGGCCC	1 cut(s)	227
PspPI	GGNCC	4 cut(s)	76, 227, 228, 320
PspXI	VCTCGAGB	1 cut(s)	990
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	561
RsaI	GTAC	2 cut(s)	166, 785
RsaNI	GTAC	2 cut(s)	165, 784
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	7 cut(s)	172, 175, 199, 386, 555, 693, 696
Sau3AI	GATC	1 cut(s)	561
Sau96I	GGNCC	4 cut(s)	76, 227, 228, 320
ScaI	AGTACT	1 cut(s)	166
SchI	GAGTC	6 cut(s)	20, 397, 596, 741, 823, 1091
ScrFI	CCNGG	3 cut(s)	47, 600, 622
SduI	GDGCHC	2 cut(s)	224, 231
SexAI	ACCWGGT	1 cut(s)	598
SfaNI	GCATC	2 cut(s)	272, 364
SfcI	CTRYAG	1 cut(s)	693
Sfr274I	CTCGAG	1 cut(s)	990
SinI	GGWCC	1 cut(s)	320
SlaI	CTCGAG	1 cut(s)	990
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	3 cut(s)	71, 217, 990
SmoI	CTYRAG	3 cut(s)	71, 217, 990
SnaBI	TACGTA	1 cut(s)	922
SphI	GCATGC	1 cut(s)	884
Sse9I	AATT	6 cut(s)	138, 206, 341, 485, 639, 978
SsiI	CCGC	3 cut(s)	386, 609, 854
SspMI	CTAG	5 cut(s)	23, 168, 380, 479, 632
StyD4I	CCNGG	3 cut(s)	45, 598, 620
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	705
TaiI	ACGT	2 cut(s)	842, 924
TaqI	TCGA	4 cut(s)	750, 867, 894, 991
TasI	AATT	6 cut(s)	138, 206, 341, 485, 639, 978
TatI	WGTACW	1 cut(s)	164
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	2 cut(s)	86, 669
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	4 cut(s)	229, 256, 375, 422
TseI	GCWGC	6 cut(s)	171, 174, 198, 554, 692, 695
TspDTI	ATGAA	4 cut(s)	498, 608, 661, 939
TspGWI	ACGGA	2 cut(s)	540, 768
TspRI	CASTG	4 cut(s)	229, 256, 375, 422
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	320
VspI	ATTAAT	1 cut(s)	642
XapI	RAATTY	2 cut(s)	138, 341
XbaI	TCTAGA	1 cut(s)	631
XceI	RCATGY	1 cut(s)	884
XhoI	CTCGAG	1 cut(s)	990
XspI	CTAG	5 cut(s)	23, 168, 380, 479, 632
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.