Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002836

Physical Location & Seq

Genomic Coordinates Forward (+)

21940152 .. 21945685

Gene Structure 5534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG246100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGACACTAGTTATCAACTATCAACAACAAAATAATCAATTAGATTTAAACTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAGTCAAATTGGGTATCACTCTCTTTGCATCTGTTGCTGCAACTCTTGGACTAAAATATTGCTCGAGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiQ

Protein Analysis

100

Amino Acids

10.83

Weight (kDa)

8.98

Isoelectric Point (pI)

26.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21580
fragaria_vesca	FvH4_4g14170 FvH4_4g14170 FvH4_4g14170 FvH4_4g14170
malus_domestica	MD13G1180000.v1.1
prunus_persica	Prupe.1G148500_v2.0.a1
pyrus_communis	pycom13g15550
rosa_chinensis	RchiOBHm_Chr1g0356001 RchiOBHm_Chr2g0086241 RchiOBHm_Chr4g0419051 RchiOBHm_Chr5g0045591 RchiOBHm_Chr5g0064291
rosa_laevigata	RLG00000007829 RLG00000023906
rosa_multiflora	Rmu_sc0000048.1_g000009 Rmu_sc0000831.1_g000030 Rmu_sc0000913.1_g000005 Rmu_sc0015926.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362110 Rroxscaffold_7G00165560
rosa_rugosa	Rorug04G0095000 Rorug04G0156700 Rorug04G0156800 Rorug04G0156900
rosa_samantha	Rh1DG103700 Rh2CG432800 Rh2CG585000 Rh4AG218300 Rh4BG219800 Rh4CG230200 Rh4DG216800 Rh5BG312800 Rh5DG323400 Rh7BG246100 Rh7CG235700 Rh7CG310900
rosa_wichuraiana	Rw4G018660 Rw5G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	127
AciI	CCGC	5 cut(s)	69, 72, 92, 117, 168
AclWI	GGATC	2 cut(s)	126, 139
AcoI	YGGCCR	1 cut(s)	181
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	189
AhlI	ACTAGT	1 cut(s)	7
AluBI	AGCT	2 cut(s)	65, 125
AluI	AGCT	2 cut(s)	65, 125
AlwI	GGATC	2 cut(s)	126, 139
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	266
AsuNHI	GCTAGC	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BcuI	ACTAGT	1 cut(s)	7
BfaI	CTAG	2 cut(s)	8, 171
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	2 cut(s)	72, 267
BlsI	GCNGC	2 cut(s)	73, 268
BmeT110I	CYCGRG	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	133, 163, 198
BmsI	GCATC	1 cut(s)	266
BmtI	GCTAGC	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	131, 153
BspACI	CCGC	5 cut(s)	69, 72, 92, 117, 168
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	133, 163, 198
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	126, 139
BspT107I	GGYRCC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	131, 153
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	76, 117, 172
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	95
BstKTI	GATC	2 cut(s)	134, 156
BstMBI	GATC	2 cut(s)	131, 153
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 84, 180, 263
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	95
Cac8I	GCNNGC	3 cut(s)	76, 117, 172
Csp6I	GTAC	1 cut(s)	187
CspCI	CAANNNNNGTGG	2 cut(s)	77, 112
CviJI	RGCY	5 cut(s)	65, 87, 125, 174, 183
CviKI_1	RGCY	5 cut(s)	65, 87, 125, 174, 183
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	2 cut(s)	133, 155
DpnII	GATC	2 cut(s)	131, 153
DraI	TTTAAA	1 cut(s)	48
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	292
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	72, 267
Fsp4HI	GCNGC	2 cut(s)	72, 267
FspBI	CTAG	2 cut(s)	8, 171
GluI	GCNGC	2 cut(s)	72, 267
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	56, 136, 149, 196
Hpy188III	TCNNGA	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	257, 269
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 84, 180, 263
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	131, 153
LpnPI	CCDG	5 cut(s)	88, 122, 172, 197, 241
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	266
MaeI	CTAG	2 cut(s)	8, 171
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	133, 155
MboI	GATC	2 cut(s)	131, 153
MboII	GAAGA	1 cut(s)	203
MflI	RGATCY	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	3 cut(s)	38, 57, 236
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	183
MspI	CCGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	71, 84, 180, 263
NdeII	GATC	2 cut(s)	131, 153
NheI	GCTAGC	1 cut(s)	170
NlaIV	GGNNCC	3 cut(s)	133, 163, 198
NmuCI	GTSAC	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	73, 268
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	190
PspN4I	GGNNCC	3 cut(s)	133, 163, 198
PspXI	VCTCGAGB	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	131
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	2 cut(s)	72, 267
Sau3AI	GATC	2 cut(s)	131, 153
SchI	GAGTC	1 cut(s)	240
SetI	ASST	4 cut(s)	67, 111, 127, 192
SfaNI	GCATC	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
SpeI	ACTAGT	1 cut(s)	7
Sse9I	AATT	3 cut(s)	38, 57, 236
SsiI	CCGC	5 cut(s)	69, 72, 92, 117, 168
SspI	AATATT	1 cut(s)	287
SspMI	CTAG	2 cut(s)	8, 171
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	222, 293
TasI	AATT	3 cut(s)	38, 57, 236
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	292
XspI	CTAG	2 cut(s)	8, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.