FvH4_4g14170

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002836
Physical Location & Seq
Reverse (-)
17765701 .. 17773762
8062 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14170.t4

Sequence Viewer

Length: 1155 bp
ATGGGCTTCACGCATCGCTCCATCGCAACGGTAACATTTCCCTATTTCCCACTAAACCCTACTCCCAAAACCCCAACCTTCTTCACTCCACTACCTTCCCTCCACAACCACAAAACCCTTGTTTCTGTAAACCCTAAATCAAGCTTCCGCTTCCGAATTAGAGCCTCCGCCGCCGGCGAGAGTAGCAGCCAGACGCCGTGGTGGGTGAACCTGGTGCCGACCCAAGGTTTGGGAGCTGATAAAGTTCTCAGATTGATTTCGGGGGCCACCGCTAGCCCCATTGGGCAGTACGTGTCCGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAATCAAATTGGTTTGGCTTTTGGCTCTTGTTGTATTACCAGCGAGGTCACACATAATACTGCGCTTTGGATTAGTCTTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGGAGAGTATCTTTAATTTCTGGACTTTTATTCATTATGCTCGGGCTGGGTGCAGATGGTGCACCACCCCTTGTTCAGTTGAGAACCCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATCTAATTTTTAAGCTAGGACCAATACAATTTACACAGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGCTTAACCTTTACTGTCTTCCAAAGTGCGAGCCTTTGCCTAACAACCACAACCCCTGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGGCAAATCTTGGAGTTCCAGTGGCTGAAATTATTCTTACACTCATGCTTTCATTGAGGTTCATCAGTCTAGTGTTTGATGAGGTCCGTAATGTTGCACTGGGAATTGTATCTCGTAGGGTAGACTGGCAACAGTTGACAATGGTGGAGACAATTGATGTTTTCTTTGCCTACTTTCGTAGGATCTTCAAAAATATTTTTAGCCATGCAGAGCAGATTTCACAGGCAATGATTGCAAGAGGTTTCAGAGGGGACTGCAACACGCATAAAATGTACCTGTTATCAGATCCTTCCATTGGTATAGCAGATGTTGTTTCACTGTTATGCCTGGTTGGTATTATAGGTGCTGCGGTTTGGTCGGACTACTTTCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

385

Amino Acids

42.32

Weight (kDa)

9.69

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 229
AccI GTMKAC 1 cut(s) 900
AciI CCGC 6 cut(s) 148, 168, 171, 270, 760, 1127
AclWI GGATC 3 cut(s) 468, 968, 1058
AcoI YGGCCR 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 759
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 2 cut(s) 290, 1052
AfiI CCNNNNNNNGG 4 cut(s) 224, 229, 762, 1073
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 1 cut(s) 967
AjnI CCWGG 2 cut(s) 210, 1104
AloI GAACNNNNNNTCC 2 cut(s) 544, 576
AluBI AGCT 4 cut(s) 144, 236, 628, 677
AluI AGCT 4 cut(s) 144, 236, 628, 677
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 2 cut(s) 439, 920
Alw44I GTGCAC 1 cut(s) 528
AlwI GGATC 3 cut(s) 468, 968, 1058
AlwNI CAGNNNCTG 1 cut(s) 803
Ama87I CYCGRG 1 cut(s) 509
AoxI GGCC 2 cut(s) 264, 417
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 3 cut(s) 186, 677, 1124
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 264, 632, 862
AsuHPI GGTGA 1 cut(s) 217
AsuNHI GCTAGC 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 509
AvaII GGWCC 2 cut(s) 632, 862
BaeGI GKGCMC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 419
BanI GGYRCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 691
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 3 cut(s) 198, 664, 1111
BccI CCATC 3 cut(s) 29, 451, 518
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 2 cut(s) 212, 1106
BcoDI GTCTC 2 cut(s) 439, 920
BfaI CTAG 3 cut(s) 273, 629, 848
BfmI CTRYAG 1 cut(s) 663
BisI GCNGC 4 cut(s) 171, 187, 678, 1125
BlsI GCNGC 4 cut(s) 172, 188, 679, 1126
Bme1390I CCNGG 2 cut(s) 212, 1106
Bme18I GGWCC 2 cut(s) 632, 862
BmeT110I CYCGRG 1 cut(s) 509
BmgT120I GGNCC 3 cut(s) 264, 632, 862
BmiI GGNNCC 2 cut(s) 216, 265
BmrFI CCNGG 2 cut(s) 212, 1106
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 2 cut(s) 22, 602
BmtI GCTAGC 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 887
BpiI GAAGAC 1 cut(s) 691
BplI GAGNNNNNCTC 2 cut(s) 541, 573
BsaAI YACGTR 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 197, 223
BsaXI ACNNNNNCTCC 6 cut(s) 84, 114, 544, 574, 783, 813
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 229, 762, 1073
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 3 cut(s) 797, 882, 908
Bse3DI GCAATG 1 cut(s) 1011
BseBI CCWGG 2 cut(s) 212, 1106
BseDI CCNNGG 2 cut(s) 197, 223
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 4 cut(s) 224, 229, 762, 1073
BseMI GCAATG 1 cut(s) 1011
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 3 cut(s) 797, 882, 908
BseRI GAGGAG 1 cut(s) 549
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 3 cut(s) 198, 664, 1111
BseYI CCCAGC 1 cut(s) 514
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 2 cut(s) 266, 419
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 532
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 4 cut(s) 224, 229, 762, 1073
BsmAI GTCTC 2 cut(s) 439, 920
BsmFI GGGAC 1 cut(s) 1043
BsnI GGCC 2 cut(s) 266, 419
BsoBI CYCGRG 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 532
Bsp143I GATC 3 cut(s) 460, 960, 1063
BspACI CCGC 6 cut(s) 148, 168, 171, 270, 760, 1127
BspANI GGCC 2 cut(s) 266, 419
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 216, 265
BspOI GCTAGC 1 cut(s) 276
BspPI GGATC 3 cut(s) 468, 968, 1058
BspT107I GGYRCC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 1011
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 3 cut(s) 797, 882, 908
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 197, 223
BssMI GATC 3 cut(s) 460, 960, 1063
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 2 cut(s) 212, 1106
Bst4CI ACNGT 4 cut(s) 31, 697, 912, 1098
BstACI GRCGYC 1 cut(s) 194
BstAPI GCANNNNNTGC 2 cut(s) 527, 1010
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 6 cut(s) 175, 274, 604, 670, 682, 712
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 462
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 3 cut(s) 463, 963, 1066
BstMAI GTCTC 2 cut(s) 439, 920
BstMBI GATC 3 cut(s) 460, 960, 1063
BstMWI GCNNNNNNNGC 6 cut(s) 170, 183, 527, 599, 674, 1010
BstNI CCWGG 2 cut(s) 212, 1106
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 2 cut(s) 210, 1104
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 532
BstV1I GCAGC 3 cut(s) 198, 664, 1111
BstV2I GAAGAC 1 cut(s) 691
BstX2I RGATCY 2 cut(s) 960, 1063
BstYI RGATCY 2 cut(s) 960, 1063
BsuRI GGCC 2 cut(s) 266, 419
BtgI CCRYGG 1 cut(s) 197
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 462
BtsIMutI CAGTG 3 cut(s) 804, 875, 1094
Cac8I GCNNGC 6 cut(s) 175, 274, 604, 670, 682, 712
CaiI CAGNNNCTG 1 cut(s) 803
CfoI GCGC 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 264, 632, 862
CseI GACGC 1 cut(s) 202
CsiI ACCWGGT 1 cut(s) 210
Csp6I GTAC 2 cut(s) 289, 1051
CviAII CATG 3 cut(s) 449, 823, 983
CviQI GTAC 2 cut(s) 289, 1051
DdeI CTNAG 1 cut(s) 248
DpnI GATC 3 cut(s) 462, 962, 1065
DpnII GATC 3 cut(s) 460, 960, 1063
EaeI YGGCCR 1 cut(s) 417
EciI GGCGGA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 632, 862
Eco57I CTGAAG 1 cut(s) 759
Eco88I CYCGRG 1 cut(s) 509
EcoRII CCWGG 2 cut(s) 210, 1104
EcoT14I CCWWGG 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 3 cut(s) 452, 826, 986
FaqI GGGAC 1 cut(s) 1043
FatI CATG 3 cut(s) 448, 822, 982
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 4 cut(s) 171, 187, 678, 1125
FokI GGATG 1 cut(s) 469
Fsp4HI GCNGC 4 cut(s) 171, 187, 678, 1125
FspBI CTAG 3 cut(s) 273, 629, 848
GlaI GCGC 1 cut(s) 395
GluI GCNGC 4 cut(s) 171, 187, 678, 1125
GsaI CCCAGC 1 cut(s) 518
HaeIII GGCC 2 cut(s) 266, 419
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 3 cut(s) 452, 826, 986
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 1 cut(s) 915
HindII GTYRAC 1 cut(s) 915
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 1 cut(s) 333
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 5 cut(s) 130, 208, 530, 901, 915
Hpy188I TCNGA 6 cut(s) 155, 251, 298, 1025, 1063, 1138
Hpy188III TCNNGA 2 cut(s) 323, 489
Hpy8I GTNNAC 5 cut(s) 130, 208, 530, 901, 915
HpyAV CCTTC 4 cut(s) 88, 105, 646, 1077
HpyCH4III ACNGT 4 cut(s) 31, 697, 912, 1098
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 9 cut(s) 521, 530, 566, 593, 749, 875, 986, 1013, 1035
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 183, 527, 599, 674, 1010
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 3 cut(s) 452, 826, 986
HspAI GCGC 1 cut(s) 394
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 3 cut(s) 460, 960, 1063
LmnI GCTCC 3 cut(s) 23, 233, 777
Lsp1109I GCAGC 3 cut(s) 198, 664, 1111
LweI GCATC 2 cut(s) 22, 602
MabI ACCWGGT 1 cut(s) 210
MaeI CTAG 3 cut(s) 273, 629, 848
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 31, 304, 378
MalI GATC 3 cut(s) 462, 962, 1065
MboI GATC 3 cut(s) 460, 960, 1063
MboII GAAGA 6 cut(s) 73, 305, 578, 691, 752, 955
MfeI CAATTG 2 cut(s) 464, 930
MflI RGATCY 2 cut(s) 960, 1063
MhlI GDGCHC 1 cut(s) 532
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 9 cut(s) 156, 338, 464, 483, 618, 641, 807, 882, 930
MluNI TGGCCA 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 1116
MnlI CCTC 9 cut(s) 110, 175, 369, 567, 570, 828, 853, 1010, 1019
Mox20I TGGCCA 1 cut(s) 419
MreI CGCCGGCG 1 cut(s) 173
MroNI GCCGGC 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 810
MscI TGGCCA 1 cut(s) 419
MseI TTAA 3 cut(s) 482, 624, 686
MslI CAYNNNNRTG 1 cut(s) 1099
Msp20I TGGCCA 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 212, 1106
MunI CAATTG 2 cut(s) 464, 930
MvaI CCWGG 2 cut(s) 212, 1106
MwoI GCNNNNNNNGC 6 cut(s) 170, 183, 527, 599, 674, 1010
NaeI GCCGGC 1 cut(s) 175
NdeII GATC 3 cut(s) 460, 960, 1063
NgoMIV GCCGGC 1 cut(s) 173
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 3 cut(s) 452, 826, 986
NlaIV GGNNCC 2 cut(s) 216, 265
NmeAIII GCCGAG 1 cut(s) 468
NmuCI GTSAC 2 cut(s) 304, 378
NspI RCATGY 1 cut(s) 452
PdiI GCCGGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 810
PfeI GAWTC 1 cut(s) 333
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 4 cut(s) 172, 188, 679, 1126
Ppu21I YACGTR 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 210, 1104
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 2 cut(s) 210, 1104
PspN4I GGNNCC 2 cut(s) 216, 265
PspPI GGNCC 3 cut(s) 264, 632, 862
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 2 cut(s) 960, 1063
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 2 cut(s) 290, 1052
RsaNI GTAC 2 cut(s) 289, 1051
RseI CAYNNNNRTG 1 cut(s) 1099
SaqAI TTAA 3 cut(s) 482, 624, 686
SatI GCNGC 4 cut(s) 171, 187, 678, 1125
Sau3AI GATC 3 cut(s) 460, 960, 1063
Sau96I GGNCC 3 cut(s) 264, 632, 862
ScrFI CCNGG 2 cut(s) 212, 1106
SduI GDGCHC 1 cut(s) 532
SexAI ACCWGGT 1 cut(s) 210
SfaNI GCATC 2 cut(s) 22, 602
SfcI CTRYAG 1 cut(s) 663
SgrAI CRCCGGYG 1 cut(s) 173
SinI GGWCC 2 cut(s) 632, 862
SmiMI CAYNNNNRTG 1 cut(s) 1099
Sse9I AATT 9 cut(s) 156, 338, 464, 483, 618, 641, 807, 882, 930
SsiI CCGC 6 cut(s) 148, 168, 171, 270, 760, 1127
SspI AATATT 1 cut(s) 973
SspMI CTAG 3 cut(s) 273, 629, 848
StyD4I CCNGG 2 cut(s) 210, 1104
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 4 cut(s) 31, 697, 912, 1098
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 324
TasI AATT 9 cut(s) 156, 338, 464, 483, 618, 641, 807, 882, 930
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 3 cut(s) 482, 624, 686
Tru9I TTAA 3 cut(s) 482, 624, 686
TscAI CASTG 3 cut(s) 804, 882, 1101
TseFI GTSAC 2 cut(s) 304, 378
TseI GCWGC 3 cut(s) 186, 677, 1124
Tsp45I GTSAC 2 cut(s) 304, 378
TspDTI ATGAA 4 cut(s) 305, 490, 819, 829
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 3 cut(s) 804, 882, 1101
Van91I CCANNNNNTGG 1 cut(s) 229
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 2 cut(s) 632, 862
XceI RCATGY 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 900
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 3 cut(s) 273, 629, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.