RchiOBHm_Chr4g0419051

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002836
Physical Location & Seq
Forward (+)
44549352 .. 44557069
7718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38899

Sequence Viewer

Length: 1149 bp
ATGAGCTTCACACATCGCTCCATCGCAACGGTAACATTTCCCTATTTCCCACTAAACCCTCCTACTCCCAAAACCCCAAACTTCACTCCCCTTCGTTCATTCAACAACAACAACAACAAAACCCTTATTTCTGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAGTCAAATTGGTTTGGCTTTTGGCTCTAGTTGTTTTACCAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGCAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACGGTTTTCCAAAGTGCGAGCCTTTGCCTAACAACCACAACCCCCGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGTTTTCTTTGCCTACTTCCGTAGGATCTTCAAAAATATTTTTAGCCACGCAGAGCAGATTTCACAGGCGATGATTGCAAGAGGTTTCAGAGGGGACTGCAACACACATAAAATGTACCTGTTATCAGATCCATCCATTGGTATAGCAGATGTTGTTTCTTTGTTATGCCTGGCTGGTATTATAGGTGCTGCGGTTTGGTCGGACTTTCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

382

Amino Acids

42.01

Weight (kDa)

9.82

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 102 - 344 4.9e-19 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 260
AccB7I CCANNNNNTGG 2 cut(s) 226, 1070
AciI CCGC 7 cut(s) 168, 171, 191, 216, 267, 757, 1124
AclWI GGATC 5 cut(s) 225, 238, 465, 965, 1055
AcoI YGGCCR 2 cut(s) 280, 414
AcuI CTGAAG 1 cut(s) 822
AfaI GTAC 2 cut(s) 287, 1049
AfiI CCNNNNNNNGG 3 cut(s) 226, 759, 1070
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 2 cut(s) 103, 964
AjnI CCWGG 1 cut(s) 1101
AloI GAACNNNNNNTCC 2 cut(s) 541, 573
AluBI AGCT 6 cut(s) 6, 150, 164, 224, 625, 674
AluI AGCT 6 cut(s) 6, 150, 164, 224, 625, 674
Alw26I GTCTC 2 cut(s) 436, 917
AlwI GGATC 5 cut(s) 225, 238, 465, 965, 1055
AlwNI CAGNNNCTG 1 cut(s) 800
AoxI GGCC 2 cut(s) 280, 414
ApeKI GCWGC 2 cut(s) 674, 1121
Asp700I GAANNNNTTC 1 cut(s) 807
AspLEI GCGC 1 cut(s) 527
AspS9I GGNCC 1 cut(s) 629
AsuNHI GCTAGC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 629
BalI TGGCCA 2 cut(s) 282, 416
BamHI GGATCC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 661, 1108
BccI CCATC 4 cut(s) 29, 448, 515, 1072
BceAI ACGGC 1 cut(s) 178
BcgI CGANNNNNNTGC 4 cut(s) 193, 227, 725, 759
BciT130I CCWGG 1 cut(s) 1103
BcoDI GTCTC 2 cut(s) 436, 917
BfaI CTAG 4 cut(s) 270, 356, 506, 626
BfmI CTRYAG 1 cut(s) 660
BglI GCCNNNNNGGC 1 cut(s) 279
BisI GCNGC 3 cut(s) 171, 675, 1122
BlsI GCNGC 3 cut(s) 172, 676, 1123
Bme1390I CCNGG 1 cut(s) 1103
Bme18I GGWCC 1 cut(s) 629
BmgT120I GGNCC 1 cut(s) 629
BmiI GGNNCC 3 cut(s) 232, 262, 297
BmrFI CCNGG 1 cut(s) 1103
BmsI GCATC 1 cut(s) 599
BmtI GCTAGC 1 cut(s) 273
BplI GAGNNNNNCTC 2 cut(s) 538, 570
BsaAI YACGTR 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 4 cut(s) 541, 571, 780, 810
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 759, 1070
Bse1I ACTGG 3 cut(s) 283, 794, 905
BseBI CCWGG 1 cut(s) 1103
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 459, 1064
BseLI CCNNNNNNNGG 3 cut(s) 226, 759, 1070
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 3 cut(s) 283, 794, 905
BseRI GAGGAG 2 cut(s) 543, 546
BseXI GCAGC 2 cut(s) 661, 1108
BseYI CCCAGC 1 cut(s) 511
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 2 cut(s) 282, 416
BshNI GGYRCC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 1040
BslI CCNNNNNNNGG 3 cut(s) 226, 759, 1070
BsmAI GTCTC 2 cut(s) 436, 917
BsmFI GGGAC 1 cut(s) 1040
BsnI GGCC 2 cut(s) 282, 416
Bsp143I GATC 5 cut(s) 230, 252, 457, 957, 1060
BspACI CCGC 7 cut(s) 168, 171, 191, 216, 267, 757, 1124
BspANI GGCC 2 cut(s) 282, 416
BspCNI CTCAG 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 232, 262, 297
BspOI GCTAGC 1 cut(s) 273
BspPI GGATC 5 cut(s) 225, 238, 465, 965, 1055
BspT107I GGYRCC 1 cut(s) 260
BsrI ACTGG 3 cut(s) 283, 794, 905
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 5 cut(s) 230, 252, 457, 957, 1060
Bst2UI CCWGG 1 cut(s) 1103
Bst4CI ACNGT 4 cut(s) 31, 639, 694, 909
Bst6I CTCTTC 1 cut(s) 463
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 6 cut(s) 175, 216, 271, 601, 667, 709
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 459, 1064
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 5 cut(s) 233, 255, 460, 960, 1063
BstMAI GTCTC 2 cut(s) 436, 917
BstMBI GATC 5 cut(s) 230, 252, 457, 957, 1060
BstMWI GCNNNNNNNGC 7 cut(s) 170, 183, 279, 524, 596, 671, 1007
BstNI CCWGG 1 cut(s) 1103
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 1101
BstSFI CTRYAG 1 cut(s) 660
BstV1I GCAGC 2 cut(s) 661, 1108
BstX2I RGATCY 3 cut(s) 230, 957, 1060
BstYI RGATCY 3 cut(s) 230, 957, 1060
BsuRI GGCC 2 cut(s) 282, 416
BtgI CCRYGG 1 cut(s) 194
BtgZI GCGATG 2 cut(s) 7, 1016
BtsCI GGATG 2 cut(s) 459, 1064
BtsIMutI CAGTG 1 cut(s) 801
Cac8I GCNNGC 6 cut(s) 175, 216, 271, 601, 667, 709
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 1 cut(s) 527
Cfr13I GGNCC 1 cut(s) 629
Csp6I GTAC 2 cut(s) 286, 1048
CspCI CAANNNNNGTGG 2 cut(s) 176, 211
CviAII CATG 2 cut(s) 446, 820
CviQI GTAC 2 cut(s) 286, 1048
DdeI CTNAG 1 cut(s) 245
DpnI GATC 5 cut(s) 232, 254, 459, 959, 1062
DpnII GATC 5 cut(s) 230, 252, 457, 957, 1060
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 280, 414
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
EciI GGCGGA 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 629
Eco57I CTGAAG 1 cut(s) 822
EcoRII CCWGG 1 cut(s) 1101
FaeI CATG 2 cut(s) 449, 823
FalI AAGNNNNNCTT 4 cut(s) 460, 492, 795, 827
FaqI GGGAC 1 cut(s) 1040
FatI CATG 2 cut(s) 445, 819
FauI CCCGC 1 cut(s) 223
Fnu4HI GCNGC 3 cut(s) 171, 675, 1122
FokI GGATG 2 cut(s) 466, 1051
Fsp4HI GCNGC 3 cut(s) 171, 675, 1122
FspBI CTAG 4 cut(s) 270, 356, 506, 626
GlaI GCGC 1 cut(s) 526
GluI GCNGC 3 cut(s) 171, 675, 1122
GsaI CCCAGC 1 cut(s) 515
HaeIII GGCC 2 cut(s) 282, 416
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 527
Hin1II CATG 2 cut(s) 449, 823
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HindIII AAGCTT 2 cut(s) 148, 222
HinfI GANTC 1 cut(s) 330
HpaI GTTAAC 1 cut(s) 912
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 4 cut(s) 136, 409, 642, 912
Hpy188I TCNGA 7 cut(s) 155, 235, 248, 295, 1022, 1060, 1135
Hpy188III TCNNGA 2 cut(s) 320, 486
Hpy8I GTNNAC 4 cut(s) 136, 409, 642, 912
HpyAV CCTTC 2 cut(s) 101, 643
HpyCH4III ACNGT 4 cut(s) 31, 639, 694, 909
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 7 cut(s) 518, 563, 590, 746, 872, 1010, 1032
HpyF10VI GCNNNNNNNGC 7 cut(s) 170, 183, 279, 524, 596, 671, 1007
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 2 cut(s) 449, 823
HspAI GCGC 1 cut(s) 525
KspAI GTTAAC 1 cut(s) 912
Kzo9I GATC 5 cut(s) 230, 252, 457, 957, 1060
LmnI GCTCC 2 cut(s) 23, 774
Lsp1109I GCAGC 2 cut(s) 661, 1108
LweI GCATC 1 cut(s) 599
MaeI CTAG 4 cut(s) 270, 356, 506, 626
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 3 cut(s) 31, 301, 375
MalI GATC 5 cut(s) 232, 254, 459, 959, 1062
MboI GATC 5 cut(s) 230, 252, 457, 957, 1060
MboII GAAGA 5 cut(s) 302, 480, 575, 749, 952
MfeI CAATTG 2 cut(s) 461, 927
MflI RGATCY 3 cut(s) 230, 957, 1060
MlsI TGGCCA 2 cut(s) 282, 416
MluCI AATT 6 cut(s) 156, 335, 461, 480, 615, 927
MluNI TGGCCA 2 cut(s) 282, 416
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 2 cut(s) 273, 1113
MnlI CCTC 8 cut(s) 69, 366, 564, 567, 825, 850, 1007, 1016
Mox20I TGGCCA 2 cut(s) 282, 416
MroXI GAANNNNTTC 1 cut(s) 807
MscI TGGCCA 2 cut(s) 282, 416
MseI TTAA 5 cut(s) 479, 614, 621, 683, 911
Msp20I TGGCCA 2 cut(s) 282, 416
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 1103
MunI CAATTG 2 cut(s) 461, 927
MvaI CCWGG 1 cut(s) 1103
MwoI GCNNNNNNNGC 7 cut(s) 170, 183, 279, 524, 596, 671, 1007
NdeII GATC 5 cut(s) 230, 252, 457, 957, 1060
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 2 cut(s) 449, 823
NlaIV GGNNCC 3 cut(s) 232, 262, 297
NmeAIII GCCGAG 1 cut(s) 465
NmuCI GTSAC 2 cut(s) 301, 375
NspI RCATGY 1 cut(s) 449
PdmI GAANNNNTTC 1 cut(s) 807
PflMI CCANNNNNTGG 2 cut(s) 226, 1070
PkrI GCNGC 3 cut(s) 172, 676, 1123
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 1101
PspFI CCCAGC 1 cut(s) 511
PspGI CCWGG 1 cut(s) 1101
PspN4I GGNNCC 3 cut(s) 232, 262, 297
PspPI GGNCC 1 cut(s) 629
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 3 cut(s) 230, 957, 1060
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 2 cut(s) 287, 1049
RsaNI GTAC 2 cut(s) 286, 1048
SaqAI TTAA 5 cut(s) 479, 614, 621, 683, 911
SatI GCNGC 3 cut(s) 171, 675, 1122
Sau3AI GATC 5 cut(s) 230, 252, 457, 957, 1060
Sau96I GGNCC 1 cut(s) 629
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 1103
SfaNI GCATC 1 cut(s) 599
SfcI CTRYAG 1 cut(s) 660
SinI GGWCC 1 cut(s) 629
Sse9I AATT 6 cut(s) 156, 335, 461, 480, 615, 927
SsiI CCGC 7 cut(s) 168, 171, 191, 216, 267, 757, 1124
SspI AATATT 1 cut(s) 970
SspMI CTAG 4 cut(s) 270, 356, 506, 626
StyD4I CCNGG 1 cut(s) 1101
TaaI ACNGT 4 cut(s) 31, 639, 694, 909
TaiI ACGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 321
TasI AATT 6 cut(s) 156, 335, 461, 480, 615, 927
TauI GCSGC 1 cut(s) 173
Tru1I TTAA 5 cut(s) 479, 614, 621, 683, 911
Tru9I TTAA 5 cut(s) 479, 614, 621, 683, 911
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 2 cut(s) 301, 375
TseI GCWGC 2 cut(s) 674, 1121
Tsp45I GTSAC 2 cut(s) 301, 375
TspDTI ATGAA 4 cut(s) 87, 302, 487, 826
TspGWI ACGGA 1 cut(s) 941
TspRI CASTG 1 cut(s) 801
Van91I CCANNNNNTGG 2 cut(s) 226, 1070
VpaK11BI GGWCC 1 cut(s) 629
XceI RCATGY 1 cut(s) 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 4 cut(s) 270, 356, 506, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.