RLG00000007829

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002836
Physical Location & Seq
Reverse (-)
21676916 .. 21684205
7290 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007829

Sequence Viewer

Length: 1152 bp
ATGAGCTTCACGCATCGCTCCATCGCAACGGTAACATTTCCCTATTTCCCACTAAACCCTCCTACTCCCAAAACCCCAAACTTCACTCCCTTACGTTCACTCAACAACAACAACAATAAGGGTACCCTTATTTCTGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAACAGCCAACCGCCGTGGTGGGCCAACCTGTTGCCCGCCCACGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATCGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAGTCAAATTGGTTTGGCTTTTGGCTCTAGTTGTTTTACCAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTATTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGCAGATGGTGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTTCAATCACGGGATTATCAAATCTTCCTGCATCTCTGTCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACTGTCTTCCAAAGTGCGAGCCTTTGCCTAACAACCACAACCCCAGAAGAACTTGCATTTGCCTTGCGATGGTTTATGCTCCCTTTGACAAATATTGGAGTTCCAGTAGCTGAAGTTATTCTTACACTCATGCTTTCATTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATGTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGTTTTCTTTGCCTACTTCCGTAGGATCTTCAAAAATATTTTTAGCCACGCAGAGCAGATTTCACAGGCAATGATTGCAAGAGGTTTCAGAGGGGACTGCAACACGCATAAAATGTACCTGTTATCAGATCCATCCATTGGTAAAGCAGATGTTGTTTCTTTGTTATGCCTGGCTGGTATTATAGGTGCTGCGGTTTGGTCGGACTTTCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

384

Amino Acids

42.12

Weight (kDa)

9.8

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 103 - 345 2.4e-19 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
Acc65I GGTACC 1 cut(s) 122
AccB1I GGYRCC 2 cut(s) 122, 263
AccB7I CCANNNNNTGG 2 cut(s) 229, 1073
AciI CCGC 6 cut(s) 171, 174, 194, 219, 270, 1127
AclWI GGATC 5 cut(s) 228, 241, 468, 968, 1058
AcoI YGGCCR 2 cut(s) 283, 417
AcuI CTGAAG 1 cut(s) 825
AfaI GTAC 3 cut(s) 124, 290, 1052
AfiI CCNNNNNNNGG 3 cut(s) 229, 762, 1073
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 2 cut(s) 567, 967
AjnI CCWGG 1 cut(s) 1104
AloI GAACNNNNNNTCC 2 cut(s) 544, 576
AluBI AGCT 6 cut(s) 6, 153, 167, 628, 677, 803
AluI AGCT 6 cut(s) 6, 153, 167, 628, 677, 803
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 2 cut(s) 439, 920
Alw44I GTGCAC 1 cut(s) 528
AlwI GGATC 5 cut(s) 228, 241, 468, 968, 1058
AlwNI CAGNNNCTG 1 cut(s) 803
AoxI GGCC 3 cut(s) 204, 283, 417
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 2 cut(s) 677, 1124
Asp700I GAANNNNTTC 1 cut(s) 810
Asp718I GGTACC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 204, 632
AsuNHI GCTAGC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 632
BaeGI GKGCMC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 419
BamHI GGATCC 1 cut(s) 233
BanI GGYRCC 2 cut(s) 122, 263
BbsI GAAGAC 1 cut(s) 691
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 2 cut(s) 664, 1111
BccI CCATC 6 cut(s) 29, 287, 451, 518, 756, 1075
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 1106
BcoDI GTCTC 2 cut(s) 439, 920
BfaI CTAG 4 cut(s) 273, 359, 509, 629
BfmI CTRYAG 1 cut(s) 663
BglI GCCNNNNNGGC 1 cut(s) 282
BisI GCNGC 3 cut(s) 174, 678, 1125
BlsI GCNGC 3 cut(s) 175, 679, 1126
Bme1390I CCNGG 1 cut(s) 1106
Bme18I GGWCC 1 cut(s) 632
BmgT120I GGNCC 2 cut(s) 204, 632
BmiI GGNNCC 4 cut(s) 124, 235, 265, 300
BmrFI CCNGG 1 cut(s) 1106
BmsI GCATC 2 cut(s) 22, 602
BmtI GCTAGC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 691
BplI GAGNNNNNCTC 2 cut(s) 541, 573
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 4 cut(s) 544, 574, 783, 813
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 762, 1073
Bse1I ACTGG 3 cut(s) 286, 797, 908
Bse3DI GCAATG 1 cut(s) 1011
BseBI CCWGG 1 cut(s) 1106
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 2 cut(s) 462, 1067
BseLI CCNNNNNNNGG 3 cut(s) 229, 762, 1073
BseMI GCAATG 1 cut(s) 1011
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 3 cut(s) 286, 797, 908
BseRI GAGGAG 2 cut(s) 546, 549
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 2 cut(s) 664, 1111
BseYI CCCAGC 1 cut(s) 514
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 3 cut(s) 206, 285, 419
BshNI GGYRCC 2 cut(s) 122, 263
BsiHKAI GWGCWC 1 cut(s) 532
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 3 cut(s) 229, 762, 1073
BsmAI GTCTC 2 cut(s) 439, 920
BsmFI GGGAC 1 cut(s) 1043
BsnI GGCC 3 cut(s) 206, 285, 419
Bsp1286I GDGCHC 1 cut(s) 532
Bsp143I GATC 5 cut(s) 233, 255, 460, 960, 1063
BspACI CCGC 6 cut(s) 171, 174, 194, 219, 270, 1127
BspANI GGCC 3 cut(s) 206, 285, 419
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 4 cut(s) 124, 235, 265, 300
BspOI GCTAGC 1 cut(s) 276
BspPI GGATC 5 cut(s) 228, 241, 468, 968, 1058
BspT107I GGYRCC 2 cut(s) 122, 263
BsrDI GCAATG 1 cut(s) 1011
BsrI ACTGG 3 cut(s) 286, 797, 908
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 5 cut(s) 233, 255, 460, 960, 1063
Bst2UI CCWGG 1 cut(s) 1106
Bst4CI ACNGT 4 cut(s) 31, 642, 697, 912
Bst6I CTCTTC 1 cut(s) 466
BstAPI GCANNNNNTGC 2 cut(s) 527, 1010
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 5 cut(s) 178, 219, 274, 670, 712
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 2 cut(s) 462, 1067
BstKTI GATC 5 cut(s) 236, 258, 463, 963, 1066
BstMAI GTCTC 2 cut(s) 439, 920
BstMBI GATC 5 cut(s) 233, 255, 460, 960, 1063
BstMWI GCNNNNNNNGC 6 cut(s) 173, 186, 282, 527, 674, 1010
BstNI CCWGG 1 cut(s) 1106
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 1104
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 664, 1111
BstV2I GAAGAC 1 cut(s) 691
BstX2I RGATCY 3 cut(s) 233, 960, 1063
BstYI RGATCY 3 cut(s) 233, 960, 1063
BsuRI GGCC 3 cut(s) 206, 285, 419
BtgI CCRYGG 1 cut(s) 197
BtgZI GCGATG 2 cut(s) 7, 775
BtsCI GGATG 2 cut(s) 462, 1067
Cac8I GCNNGC 5 cut(s) 178, 219, 274, 670, 712
CaiI CAGNNNCTG 1 cut(s) 803
Cfr13I GGNCC 2 cut(s) 204, 632
Csp6I GTAC 3 cut(s) 123, 289, 1051
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviAII CATG 2 cut(s) 449, 823
CviQI GTAC 3 cut(s) 123, 289, 1051
DdeI CTNAG 1 cut(s) 248
DpnI GATC 5 cut(s) 235, 257, 462, 962, 1065
DpnII GATC 5 cut(s) 233, 255, 460, 960, 1063
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 2 cut(s) 283, 417
Eam1104I CTCTTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 466
EciI GGCGGA 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 1104
FaeI CATG 2 cut(s) 452, 826
FalI AAGNNNNNCTT 4 cut(s) 463, 495, 798, 830
FaqI GGGAC 1 cut(s) 1043
FatI CATG 2 cut(s) 448, 822
FauI CCCGC 1 cut(s) 226
Fnu4HI GCNGC 3 cut(s) 174, 678, 1125
FokI GGATG 2 cut(s) 469, 1054
Fsp4HI GCNGC 3 cut(s) 174, 678, 1125
FspBI CTAG 4 cut(s) 273, 359, 509, 629
GluI GCNGC 3 cut(s) 174, 678, 1125
GsaI CCCAGC 1 cut(s) 518
HaeIII GGCC 3 cut(s) 206, 285, 419
HapII CCGG 1 cut(s) 261
Hin1II CATG 2 cut(s) 452, 826
HincII GTYRAC 1 cut(s) 915
HindII GTYRAC 1 cut(s) 915
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 1 cut(s) 333
HpaI GTTAAC 1 cut(s) 915
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 5 cut(s) 98, 139, 530, 645, 915
Hpy188I TCNGA 7 cut(s) 158, 238, 251, 298, 1025, 1063, 1138
Hpy188III TCNNGA 2 cut(s) 323, 489
Hpy8I GTNNAC 5 cut(s) 98, 139, 530, 645, 915
HpyAV CCTTC 2 cut(s) 573, 646
HpyCH4III ACNGT 4 cut(s) 31, 642, 697, 912
HpyCH4IV ACGT 2 cut(s) 94, 291
HpyCH4V TGCA 7 cut(s) 521, 530, 593, 749, 875, 1013, 1035
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 186, 282, 527, 674, 1010
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 2 cut(s) 94, 291
Hsp92II CATG 2 cut(s) 452, 826
KpnI GGTACC 1 cut(s) 126
KspAI GTTAAC 1 cut(s) 915
Kzo9I GATC 5 cut(s) 233, 255, 460, 960, 1063
LmnI GCTCC 2 cut(s) 23, 777
Lsp1109I GCAGC 2 cut(s) 664, 1111
LweI GCATC 2 cut(s) 22, 602
MaeI CTAG 4 cut(s) 273, 359, 509, 629
MaeII ACGT 2 cut(s) 94, 291
MaeIII GTNAC 3 cut(s) 31, 304, 378
MalI GATC 5 cut(s) 235, 257, 462, 962, 1065
MboI GATC 5 cut(s) 233, 255, 460, 960, 1063
MboII GAAGA 6 cut(s) 305, 483, 578, 691, 752, 955
MfeI CAATTG 2 cut(s) 464, 930
MflI RGATCY 3 cut(s) 233, 960, 1063
MhlI GDGCHC 1 cut(s) 532
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 6 cut(s) 159, 338, 464, 483, 618, 930
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 2 cut(s) 276, 1116
MnlI CCTC 8 cut(s) 69, 369, 567, 570, 828, 853, 1010, 1019
Mox20I TGGCCA 1 cut(s) 419
MroXI GAANNNNTTC 1 cut(s) 810
MscI TGGCCA 1 cut(s) 419
MseI TTAA 5 cut(s) 482, 617, 624, 686, 914
Msp20I TGGCCA 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 1106
MunI CAATTG 2 cut(s) 464, 930
MvaI CCWGG 1 cut(s) 1106
MwoI GCNNNNNNNGC 6 cut(s) 173, 186, 282, 527, 674, 1010
NdeII GATC 5 cut(s) 233, 255, 460, 960, 1063
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 2 cut(s) 452, 826
NlaIV GGNNCC 4 cut(s) 124, 235, 265, 300
NmeAIII GCCGAG 1 cut(s) 468
NmuCI GTSAC 2 cut(s) 304, 378
NspI RCATGY 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 810
PflMI CCANNNNNTGG 2 cut(s) 229, 1073
PkrI GCNGC 3 cut(s) 175, 679, 1126
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 1104
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 1104
PspN4I GGNNCC 4 cut(s) 124, 235, 265, 300
PspPI GGNCC 2 cut(s) 204, 632
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 3 cut(s) 233, 960, 1063
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 3 cut(s) 124, 290, 1052
RsaNI GTAC 3 cut(s) 123, 289, 1051
SaqAI TTAA 5 cut(s) 482, 617, 624, 686, 914
SatI GCNGC 3 cut(s) 174, 678, 1125
Sau3AI GATC 5 cut(s) 233, 255, 460, 960, 1063
Sau96I GGNCC 2 cut(s) 204, 632
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 1106
SduI GDGCHC 1 cut(s) 532
SfaNI GCATC 2 cut(s) 22, 602
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 1 cut(s) 632
Sse9I AATT 6 cut(s) 159, 338, 464, 483, 618, 930
SsiI CCGC 6 cut(s) 171, 174, 194, 219, 270, 1127
SspI AATATT 2 cut(s) 787, 973
SspMI CTAG 4 cut(s) 273, 359, 509, 629
StyD4I CCNGG 1 cut(s) 1104
TaaI ACNGT 4 cut(s) 31, 642, 697, 912
TaiI ACGT 2 cut(s) 97, 294
TaqI TCGA 1 cut(s) 324
TasI AATT 6 cut(s) 159, 338, 464, 483, 618, 930
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 5 cut(s) 482, 617, 624, 686, 914
Tru9I TTAA 5 cut(s) 482, 617, 624, 686, 914
TseFI GTSAC 2 cut(s) 304, 378
TseI GCWGC 2 cut(s) 677, 1124
Tsp45I GTSAC 2 cut(s) 304, 378
TspDTI ATGAA 4 cut(s) 305, 490, 819, 829
TspGWI ACGGA 1 cut(s) 944
Van91I CCANNNNNTGG 2 cut(s) 229, 1073
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 1 cut(s) 632
XceI RCATGY 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 4 cut(s) 273, 359, 509, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.