Rh4BG219800

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002836
Physical Location & Seq
Forward (+)
38005823 .. 38013466
7644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG219800.1

Sequence Viewer

Length: 1053 bp
ATGAGCTTCACACATCGCTCCATCGCAACGGTAACATTTCCCTATTTCCCACTAAACCCTCCTACTCCCAAAACCCCAAACTTCACTCCCCTTCGTTCATTCAACAACAACAACAAAACCCTTATTTCTGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATATCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAGTCAAACTGGTTTGGCTTTTGGCTCTAGTTGTTTTACCAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCAAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGCAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACGGTTTTCCAAAGTGCGAGCCTTTGCCTAACAACCACAACCCCCGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGGTAAAGCCTCTATTGCATTTGTATGGGAAGATTTCATTGTTCATTTTTTTTTCCTATTAGTTCTCTTCTCAATTTTAGCAATAAAAATCAAATCTGAGTTAGGTTTTTCAAAACAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

350

Amino Acids

38.62

Weight (kDa)

9.9

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 101 - 308 6.1e-12 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 6 cut(s) 165, 168, 188, 213, 264, 754
AclWI GGATC 3 cut(s) 222, 235, 462
AcoI YGGCCR 2 cut(s) 277, 411
AcuI CTGAAG 1 cut(s) 819
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 223, 756
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 2 cut(s) 103, 1041
AloI GAACNNNNNNTCC 2 cut(s) 538, 570
AluBI AGCT 6 cut(s) 6, 147, 161, 221, 622, 671
AluI AGCT 6 cut(s) 6, 147, 161, 221, 622, 671
Alw26I GTCTC 1 cut(s) 914
AlwI GGATC 3 cut(s) 222, 235, 462
AlwNI CAGNNNCTG 1 cut(s) 797
AoxI GGCC 2 cut(s) 277, 411
ApeKI GCWGC 1 cut(s) 671
Asp700I GAANNNNTTC 1 cut(s) 804
AspLEI GCGC 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 626
AsuNHI GCTAGC 1 cut(s) 266
AvaII GGWCC 1 cut(s) 626
BalI TGGCCA 2 cut(s) 279, 413
BamHI GGATCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 658
BccI CCATC 4 cut(s) 29, 445, 512, 923
BceAI ACGGC 1 cut(s) 175
BcgI CGANNNNNNTGC 4 cut(s) 190, 224, 722, 756
BcoDI GTCTC 1 cut(s) 914
BfaI CTAG 4 cut(s) 267, 353, 503, 623
BfmI CTRYAG 1 cut(s) 657
BglI GCCNNNNNGGC 1 cut(s) 276
BisI GCNGC 2 cut(s) 168, 672
BlsI GCNGC 2 cut(s) 169, 673
Bme18I GGWCC 1 cut(s) 626
BmgT120I GGNCC 1 cut(s) 626
BmiI GGNNCC 3 cut(s) 229, 259, 294
BmsI GCATC 1 cut(s) 596
BmtI GCTAGC 1 cut(s) 270
BplI GAGNNNNNCTC 2 cut(s) 535, 567
BsaAI YACGTR 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 254
BsaXI ACNNNNNCTCC 4 cut(s) 538, 568, 777, 807
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 756
Bse1I ACTGG 4 cut(s) 280, 339, 791, 902
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 2 cut(s) 223, 756
BseMII CTCAG 2 cut(s) 256, 1017
BseNI ACTGG 4 cut(s) 280, 339, 791, 902
BseRI GAGGAG 2 cut(s) 540, 543
BseXI GCAGC 1 cut(s) 658
BseYI CCCAGC 1 cut(s) 508
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 2 cut(s) 279, 413
BshNI GGYRCC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 223, 756
BsmAI GTCTC 1 cut(s) 914
BsnI GGCC 2 cut(s) 279, 413
Bsp143I GATC 3 cut(s) 227, 249, 454
BspACI CCGC 6 cut(s) 165, 168, 188, 213, 264, 754
BspANI GGCC 2 cut(s) 279, 413
BspCNI CTCAG 2 cut(s) 255, 1018
BspLI GGNNCC 3 cut(s) 229, 259, 294
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 3 cut(s) 222, 235, 462
BspT107I GGYRCC 1 cut(s) 257
BsrI ACTGG 4 cut(s) 280, 339, 791, 902
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 3 cut(s) 227, 249, 454
Bst4CI ACNGT 4 cut(s) 31, 636, 691, 906
Bst6I CTCTTC 2 cut(s) 460, 1001
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 6 cut(s) 172, 213, 268, 598, 664, 706
BstDEI CTNAG 2 cut(s) 242, 1026
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 456
BstHHI GCGC 1 cut(s) 524
BstKTI GATC 3 cut(s) 230, 252, 457
BstMAI GTCTC 1 cut(s) 914
BstMBI GATC 3 cut(s) 227, 249, 454
BstMWI GCNNNNNNNGC 6 cut(s) 167, 276, 521, 593, 668, 944
BstNSI RCATGY 1 cut(s) 446
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 1 cut(s) 658
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BsuRI GGCC 2 cut(s) 279, 413
BtgI CCRYGG 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 798
Cac8I GCNNGC 6 cut(s) 172, 213, 268, 598, 664, 706
CaiI CAGNNNCTG 1 cut(s) 797
CfoI GCGC 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 626
Csp6I GTAC 1 cut(s) 283
CspCI CAANNNNNGTGG 2 cut(s) 173, 208
CviAII CATG 2 cut(s) 443, 817
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 2 cut(s) 242, 1026
DpnI GATC 3 cut(s) 229, 251, 456
DpnII GATC 3 cut(s) 227, 249, 454
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 2 cut(s) 277, 411
Eam1104I CTCTTC 2 cut(s) 460, 1001
EarI CTCTTC 2 cut(s) 460, 1001
EciI GGCGGA 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 626
Eco57I CTGAAG 1 cut(s) 819
FaeI CATG 2 cut(s) 446, 820
FaiI YATR 8 cut(s) 380, 427, 444, 500, 607, 764, 818, 955
FalI AAGNNNNNCTT 4 cut(s) 457, 489, 792, 824
FatI CATG 2 cut(s) 442, 816
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 168, 672
FokI GGATG 1 cut(s) 463
Fsp4HI GCNGC 2 cut(s) 168, 672
FspBI CTAG 4 cut(s) 267, 353, 503, 623
GlaI GCGC 1 cut(s) 523
GluI GCNGC 2 cut(s) 168, 672
GsaI CCCAGC 1 cut(s) 512
HaeIII GGCC 2 cut(s) 279, 413
HapII CCGG 1 cut(s) 255
HhaI GCGC 1 cut(s) 524
Hin1II CATG 2 cut(s) 446, 820
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HindIII AAGCTT 2 cut(s) 145, 219
HinfI GANTC 1 cut(s) 327
HpaI GTTAAC 1 cut(s) 909
HpaII CCGG 1 cut(s) 255
Hpy166II GTNNAC 4 cut(s) 133, 406, 639, 909
Hpy188I TCNGA 5 cut(s) 152, 232, 245, 292, 1027
Hpy188III TCNNGA 2 cut(s) 317, 483
Hpy8I GTNNAC 4 cut(s) 133, 406, 639, 909
HpyAV CCTTC 2 cut(s) 101, 640
HpyCH4III ACNGT 4 cut(s) 31, 636, 691, 906
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 6 cut(s) 515, 560, 587, 743, 869, 947
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 276, 521, 593, 668, 944
HpyF3I CTNAG 2 cut(s) 242, 1026
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 2 cut(s) 446, 820
HspAI GCGC 1 cut(s) 522
KspAI GTTAAC 1 cut(s) 909
Kzo9I GATC 3 cut(s) 227, 249, 454
LmnI GCTCC 2 cut(s) 23, 771
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 1 cut(s) 596
MaeI CTAG 4 cut(s) 267, 353, 503, 623
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 3 cut(s) 31, 298, 372
MalI GATC 3 cut(s) 229, 251, 456
MboI GATC 3 cut(s) 227, 249, 454
MboII GAAGA 6 cut(s) 299, 477, 572, 746, 971, 988
MfeI CAATTG 2 cut(s) 458, 924
MflI RGATCY 1 cut(s) 227
MlsI TGGCCA 2 cut(s) 279, 413
MluCI AATT 6 cut(s) 153, 458, 477, 612, 924, 1002
MluNI TGGCCA 2 cut(s) 279, 413
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 2 cut(s) 208, 270
MnlI CCTC 7 cut(s) 69, 363, 561, 564, 822, 847, 949
Mox20I TGGCCA 2 cut(s) 279, 413
MroXI GAANNNNTTC 1 cut(s) 804
MscI TGGCCA 2 cut(s) 279, 413
MseI TTAA 5 cut(s) 476, 611, 618, 680, 908
MslI CAYNNNNRTG 1 cut(s) 952
Msp20I TGGCCA 2 cut(s) 279, 413
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 1 cut(s) 255
MunI CAATTG 2 cut(s) 458, 924
MwoI GCNNNNNNNGC 6 cut(s) 167, 276, 521, 593, 668, 944
NdeII GATC 3 cut(s) 227, 249, 454
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 2 cut(s) 446, 820
NlaIV GGNNCC 3 cut(s) 229, 259, 294
NmuCI GTSAC 2 cut(s) 298, 372
NspI RCATGY 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 804
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 2 cut(s) 169, 673
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 508
PspN4I GGNNCC 3 cut(s) 229, 259, 294
PspPI GGNCC 1 cut(s) 626
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 952
SaqAI TTAA 5 cut(s) 476, 611, 618, 680, 908
SatI GCNGC 2 cut(s) 168, 672
Sau3AI GATC 3 cut(s) 227, 249, 454
Sau96I GGNCC 1 cut(s) 626
SchI GAGTC 1 cut(s) 336
SfaNI GCATC 1 cut(s) 596
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 952
Sse9I AATT 6 cut(s) 153, 458, 477, 612, 924, 1002
SsiI CCGC 6 cut(s) 165, 168, 188, 213, 264, 754
SspMI CTAG 4 cut(s) 267, 353, 503, 623
TaaI ACNGT 4 cut(s) 31, 636, 691, 906
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 318
TasI AATT 6 cut(s) 153, 458, 477, 612, 924, 1002
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 5 cut(s) 476, 611, 618, 680, 908
Tru9I TTAA 5 cut(s) 476, 611, 618, 680, 908
TscAI CASTG 1 cut(s) 798
TseFI GTSAC 2 cut(s) 298, 372
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 2 cut(s) 298, 372
TspDTI ATGAA 6 cut(s) 87, 299, 484, 823, 955, 962
TspRI CASTG 1 cut(s) 798
Van91I CCANNNNNTGG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 626
XceI RCATGY 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 2 cut(s) 331, 444
XmnI GAANNNNTTC 1 cut(s) 804
XspI CTAG 4 cut(s) 267, 353, 503, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.