Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002836

Physical Location & Seq

Genomic Coordinates Reverse (-)

11330921 .. 11334004

Gene Structure 3084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAGCTTCGCTTACCGTGCCGTCACAACGGTAACATTCCCCTCTTTCCCGCTGAACCCTAATCCCAAAACCCTAATTGCCTCAAATTTCACTCACCCGAGCTCACTGAACAAAACCCTTATACAAGCAAAGCCGAGATTAACCCTCCAAATTCGAGCTGCGGCGAGCGATAGCAGCCAAAGCCCGTGGTGGGTGAACGTTTTGCCGACCAAAGCTTTCGGAGCCGAGAAATTCCTCAGGCTGATTTCAGGCGCGACTGCTAGCCCCATCTGCCAGTACGTCTCGGAACCCACCACCTTCCTTCATTCTGTGGACCCCAGAATCAAATTGGTTTGGCTTTTGGCTCTAGTTGTTTTACCAGCAAGGTCACATATAATACTGCGCTTTGGATTAGTAGTATACTTGGCCGTTTTGTCAATATGGATTCTTCCAAGACACACATGGATGGACCAACTGGGAAGAGTGTCCTTGATTTCTGGAATTTTATTCATTATGCTAGGGCTGGGTTCAGATGGTGTACCACCGCTTGTTCAGTTGAGAACCCCACCTTCTGCAATGATGGGATTATCAAATCTTCCTGCATCCCTGGAAGGTTACTCATATTTAATTATGAAGCTAGGTCCAATACAGTTTACAAGGAAGGGGTTGTCTGTAGCGAGCACAGCTGCTTGCTTAACCTTTACTGTCTTTCAAAGTGCGAGCCTTTGCCTTACAACCACAACCCCTGAAGAACTTGCATTTGCTTTGCGGTGGTTTATGCTCCCTTTGACACATCTTGGTGTGCCAGTGGCTGAAATTATTCTTACCCTCATGCTTTCATTGAGGTTCATCAATCTGGTTTTTGATGAGGTTCGGAATGTTGCATTGGGGATTGTATCTCGTAGGATAAACTGGGAACAGCTGACAATGGTGGAAACAATTGATCTTTTATTTGCCTACTTCCGTCGGATCTTCACAAATATTTTTAGCCATGCAGAGCAGATTTCACAGGCAATGATTGTCAGAGGTTTTAGAGGGGACAGCAATGCTCATAAGATTTACTTGTTATCAGATCCATCCATCGGGACTGCAGATATCATTTCCCTGTTATGCCTGGTTGGTGTAATAGGTGCTTCCGTATGGTTTGGCTACTTTCTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiQ

Protein Analysis

381

Amino Acids

42.04

Weight (kDa)

9.69

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21580
fragaria_vesca	FvH4_4g14170 FvH4_4g14170 FvH4_4g14170 FvH4_4g14170
malus_domestica	MD13G1180000.v1.1
prunus_persica	Prupe.1G148500_v2.0.a1
pyrus_communis	pycom13g15550
rosa_chinensis	RchiOBHm_Chr1g0356001 RchiOBHm_Chr2g0086241 RchiOBHm_Chr4g0419051 RchiOBHm_Chr5g0045591 RchiOBHm_Chr5g0064291
rosa_laevigata	RLG00000007829 RLG00000023906
rosa_multiflora	Rmu_sc0000048.1_g000009 Rmu_sc0000831.1_g000030 Rmu_sc0000913.1_g000005 Rmu_sc0015926.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362110 Rroxscaffold_7G00165560
rosa_rugosa	Rorug04G0095000 Rorug04G0156700 Rorug04G0156800 Rorug04G0156900
rosa_samantha	Rh1DG103700 Rh2CG432800 Rh2CG585000 Rh4AG218300 Rh4BG219800 Rh4CG230200 Rh4DG216800 Rh5BG312800 Rh5DG323400 Rh7BG246100 Rh7CG235700 Rh7CG310900
rosa_wichuraiana	Rw4G018660 Rw5G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	1 cut(s)	254
AciI	CCGC	4 cut(s)	50, 161, 524, 748
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	2 cut(s)	956, 1046
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	4 cut(s)	85, 150, 230, 480
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	2 cut(s)	278, 519
AfiI	CCNNNNNNNGG	2 cut(s)	190, 1061
AgsI	TTSAA	1 cut(s)	692
AjnI	CCWGG	2 cut(s)	585, 1092
AjuI	GAANNNNNNNTTGG	2 cut(s)	848, 880
AluBI	AGCT	7 cut(s)	6, 102, 158, 215, 616, 665, 901
AluI	AGCT	7 cut(s)	6, 102, 158, 215, 616, 665, 901
Alw21I	GWGCWC	2 cut(s)	104, 662
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	2 cut(s)	956, 1046
AlwNI	CAGNNNCTG	1 cut(s)	791
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	3 cut(s)	158, 174, 665
ApoI	RAATTY	4 cut(s)	85, 150, 230, 480
Asp700I	GAANNNNTTC	1 cut(s)	798
AspLEI	GCGC	2 cut(s)	254, 384
AspS9I	GGNCC	3 cut(s)	313, 448, 620
AsuHPI	GGTGA	2 cut(s)	86, 205
AsuNHI	GCTAGC	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	3 cut(s)	313, 448, 620
AxyI	CCTNAGG	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	104
Bbv12I	GWGCWC	2 cut(s)	104, 662
BbvI	GCAGC	3 cut(s)	145, 186, 652
BccI	CCATC	6 cut(s)	275, 439, 506, 553, 1063, 1067
BceAI	ACGGC	2 cut(s)	5, 392
BciT130I	CCWGG	2 cut(s)	587, 1094
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	5 cut(s)	261, 347, 497, 617, 1136
BfmI	CTRYAG	2 cut(s)	651, 1068
BisI	GCNGC	4 cut(s)	159, 162, 175, 666
BlsI	GCNGC	4 cut(s)	160, 163, 176, 667
Bme1390I	CCNGG	2 cut(s)	587, 1094
Bme18I	GGWCC	3 cut(s)	313, 448, 620
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	3 cut(s)	313, 448, 620
BmiI	GGNNCC	3 cut(s)	223, 288, 315
BmrFI	CCNGG	2 cut(s)	587, 1094
BmrI	ACTGGG	2 cut(s)	464, 901
BmsI	GCATC	1 cut(s)	590
BmtI	GCTAGC	1 cut(s)	264
BmuI	ACTGGG	2 cut(s)	464, 901
BsaJI	CCNNGG	2 cut(s)	185, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 1061
Bse1I	ACTGG	4 cut(s)	274, 459, 785, 896
Bse21I	CCTNAGG	1 cut(s)	236
Bse3DI	GCAATG	3 cut(s)	561, 999, 1030
BseBI	CCWGG	2 cut(s)	587, 1094
BseDI	CCNNGG	2 cut(s)	185, 585
BseGI	GGATG	3 cut(s)	450, 581, 1055
BseLI	CCNNNNNNNGG	2 cut(s)	190, 1061
BseMI	GCAATG	3 cut(s)	561, 999, 1030
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	4 cut(s)	274, 459, 785, 896
BseXI	GCAGC	3 cut(s)	145, 186, 652
BseYI	CCCAGC	1 cut(s)	502
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	407
BsiHKAI	GWGCWC	2 cut(s)	104, 662
BsiHKCI	CYCGRG	1 cut(s)	97
BslFI	GGGAC	2 cut(s)	1031, 1078
BslI	CCNNNNNNNGG	2 cut(s)	190, 1061
BsmAI	GTCTC	1 cut(s)	286
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	2 cut(s)	1031, 1078
BsnI	GGCC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	104, 662
Bsp143I	GATC	3 cut(s)	922, 948, 1051
BspACI	CCGC	4 cut(s)	50, 161, 524, 748
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	3 cut(s)	223, 288, 315
BspMAI	CTGCAG	1 cut(s)	1072
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	956, 1046
BsrDI	GCAATG	3 cut(s)	561, 999, 1030
BsrI	ACTGG	4 cut(s)	274, 459, 785, 896
BssECI	CCNNGG	2 cut(s)	185, 585
BssMI	GATC	3 cut(s)	922, 948, 1051
BssNAI	GTATAC	1 cut(s)	400
Bst1107I	GTATAC	1 cut(s)	400
Bst2UI	CCWGG	2 cut(s)	587, 1094
Bst4CI	ACNGT	4 cut(s)	17, 31, 630, 685
Bst6I	CTCTTC	1 cut(s)	454
BstC8I	GCNNGC	5 cut(s)	166, 262, 658, 670, 700
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	185
BstF5I	GGATG	3 cut(s)	450, 581, 1055
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	254, 384
BstKTI	GATC	3 cut(s)	925, 951, 1054
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	3 cut(s)	922, 948, 1051
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 174, 180, 221, 270, 662
BstNI	CCWGG	2 cut(s)	587, 1094
BstSCI	CCNGG	2 cut(s)	585, 1092
BstSFI	CTRYAG	2 cut(s)	651, 1068
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	3 cut(s)	145, 186, 652
BstX2I	RGATCY	2 cut(s)	948, 1051
BstYI	RGATCY	2 cut(s)	948, 1051
BstZ17I	GTATAC	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	407
BtgI	CCRYGG	1 cut(s)	185
BtsCI	GGATG	3 cut(s)	450, 581, 1055
BtsIMutI	CAGTG	2 cut(s)	104, 792
Cac8I	GCNNGC	5 cut(s)	166, 262, 658, 670, 700
CaiI	CAGNNNCTG	1 cut(s)	791
CfoI	GCGC	2 cut(s)	254, 384
Cfr13I	GGNCC	3 cut(s)	313, 448, 620
Csp6I	GTAC	2 cut(s)	277, 518
CspCI	CAANNNNNGTGG	2 cut(s)	167, 202
CviAII	CATG	3 cut(s)	441, 811, 971
CviQI	GTAC	2 cut(s)	277, 518
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	3 cut(s)	924, 950, 1053
DpnII	GATC	3 cut(s)	922, 948, 1051
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Ecl136II	GAGCTC	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	1075
Eco47I	GGWCC	3 cut(s)	313, 448, 620
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	747
Eco81I	CCTNAGG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	585, 1092
EcoRV	GATATC	1 cut(s)	1075
EcoT38I	GRGCYC	1 cut(s)	104
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	3 cut(s)	444, 814, 974
FalI	AAGNNNNNCTT	2 cut(s)	1025, 1057
FaqI	GGGAC	2 cut(s)	1031, 1078
FatI	CATG	3 cut(s)	440, 810, 970
FauI	CCCGC	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	4 cut(s)	159, 162, 175, 666
FokI	GGATG	3 cut(s)	457, 568, 1042
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	159, 162, 175, 666
FspBI	CTAG	5 cut(s)	261, 347, 497, 617, 1136
GlaI	GCGC	2 cut(s)	253, 383
GluI	GCNGC	4 cut(s)	159, 162, 175, 666
GsaI	CCCAGC	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	407
HhaI	GCGC	2 cut(s)	254, 384
Hin1II	CATG	3 cut(s)	444, 814, 974
Hin6I	GCGC	2 cut(s)	252, 382
HinP1I	GCGC	2 cut(s)	252, 382
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	321, 424
HphI	GGTGA	2 cut(s)	86, 205
Hpy166II	GTNNAC	5 cut(s)	196, 313, 400, 518, 633
Hpy188I	TCNGA	8 cut(s)	221, 286, 511, 855, 948, 1004, 1051, 1142
Hpy188III	TCNNGA	2 cut(s)	477, 1063
Hpy8I	GTNNAC	5 cut(s)	196, 313, 400, 518, 633
Hpy99I	CGWCG	1 cut(s)	948
HpyAV	CCTTC	5 cut(s)	307, 311, 558, 584, 634
HpyCH4III	ACNGT	4 cut(s)	17, 31, 630, 685
HpyCH4IV	ACGT	2 cut(s)	198, 279
HpyCH4V	TGCA	6 cut(s)	554, 581, 737, 863, 974, 1070
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 174, 180, 221, 270, 662
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	2 cut(s)	198, 279
Hsp92II	CATG	3 cut(s)	444, 814, 974
HspAI	GCGC	2 cut(s)	252, 382
Kzo9I	GATC	3 cut(s)	922, 948, 1051
LmnI	GCTCC	2 cut(s)	221, 765
Lsp1109I	GCAGC	3 cut(s)	145, 186, 652
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	5 cut(s)	261, 347, 497, 617, 1136
MaeII	ACGT	2 cut(s)	198, 279
MaeIII	GTNAC	4 cut(s)	22, 31, 366, 593
MalI	GATC	3 cut(s)	924, 950, 1053
MboI	GATC	3 cut(s)	922, 948, 1051
MboII	GAAGA	5 cut(s)	419, 471, 566, 740, 943
MfeI	CAATTG	1 cut(s)	918
MflI	RGATCY	2 cut(s)	948, 1051
MhlI	GDGCHC	2 cut(s)	104, 662
MluCI	AATT	9 cut(s)	75, 85, 150, 230, 326, 480, 606, 795, 918
MmeI	TCCRAC	1 cut(s)	926
MnlI	CCTC	9 cut(s)	52, 91, 155, 245, 816, 818, 841, 998, 1007
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	3 cut(s)	140, 605, 674
MslI	CAYNNNNRTG	2 cut(s)	443, 777
MspA1I	CMGCKG	3 cut(s)	52, 665, 901
MspR9I	CCNGG	2 cut(s)	587, 1094
MunI	CAATTG	1 cut(s)	918
MvaI	CCWGG	2 cut(s)	587, 1094
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	6 cut(s)	17, 174, 180, 221, 270, 662
NdeII	GATC	3 cut(s)	922, 948, 1051
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	444, 814, 974
NlaIV	GGNNCC	3 cut(s)	223, 288, 315
NmeAIII	GCCGAG	2 cut(s)	159, 250
NmuCI	GTSAC	2 cut(s)	22, 366
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	2 cut(s)	321, 424
PkrI	GCNGC	4 cut(s)	160, 163, 176, 667
Psp124BI	GAGCTC	1 cut(s)	104
Psp1406I	AACGTT	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	585, 1092
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	2 cut(s)	585, 1092
PspN4I	GGNNCC	3 cut(s)	223, 288, 315
PspPI	GGNCC	3 cut(s)	313, 448, 620
PstI	CTGCAG	1 cut(s)	1072
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	948, 1051
PvuII	CAGCTG	2 cut(s)	665, 901
RsaI	GTAC	2 cut(s)	278, 519
RsaNI	GTAC	2 cut(s)	277, 518
RseI	CAYNNNNRTG	2 cut(s)	443, 777
SacI	GAGCTC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	140, 605, 674
SatI	GCNGC	4 cut(s)	159, 162, 175, 666
Sau3AI	GATC	3 cut(s)	922, 948, 1051
Sau96I	GGNCC	3 cut(s)	313, 448, 620
ScrFI	CCNGG	2 cut(s)	587, 1094
SduI	GDGCHC	2 cut(s)	104, 662
SfaNI	GCATC	1 cut(s)	590
SfcI	CTRYAG	2 cut(s)	651, 1068
SinI	GGWCC	3 cut(s)	313, 448, 620
SmiMI	CAYNNNNRTG	2 cut(s)	443, 777
Sse9I	AATT	9 cut(s)	75, 85, 150, 230, 326, 480, 606, 795, 918
SsiI	CCGC	4 cut(s)	50, 161, 524, 748
SspI	AATATT	1 cut(s)	961
SspMI	CTAG	5 cut(s)	261, 347, 497, 617, 1136
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	585, 1092
TaaI	ACNGT	4 cut(s)	17, 31, 630, 685
TaiI	ACGT	2 cut(s)	201, 282
TaqI	TCGA	1 cut(s)	154
TasI	AATT	9 cut(s)	75, 85, 150, 230, 326, 480, 606, 795, 918
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	321, 424
Tru1I	TTAA	3 cut(s)	140, 605, 674
Tru9I	TTAA	3 cut(s)	140, 605, 674
TscAI	CASTG	2 cut(s)	111, 792
TseFI	GTSAC	2 cut(s)	22, 366
TseI	GCWGC	3 cut(s)	158, 174, 665
Tsp45I	GTSAC	2 cut(s)	22, 366
TspDTI	ATGAA	5 cut(s)	293, 478, 626, 807, 817
TspGWI	ACGGA	2 cut(s)	932, 1105
TspRI	CASTG	2 cut(s)	111, 792
VpaK11BI	GGWCC	3 cut(s)	313, 448, 620
XapI	RAATTY	4 cut(s)	85, 150, 230, 480
XcmI	CCANNNNNNNNNTGG	2 cut(s)	325, 438
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	5 cut(s)	261, 347, 497, 617, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.