Rh1DG103700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002836
Physical Location & Seq
Forward (+)
19407780 .. 19430901
23122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG103700.1

Sequence Viewer

Length: 390 bp
ATGGAACCAAATATTTCCCTAGACACAAACATGAGTAATATATCGTCAAGTGCCAAAATTAAACATGTCGGCAAGCTTTTTAGGTTTTCTGGGTTCATAAACTTTGTTCTTGTTCTCGCTCCCTCCATCTGCTATTTCCCGCTCACTCCATCCAGTCCCCACAATGAAGTCGACCATAGCAATCCGCGAAATCGACATCTGCCAAAAACTCCAAAGGACAAGAAAGCAACTTTACTGGTCCATGGGCTTGTAGATAAGATTGAAGATGTGTATGAAACAGTTCTTTGCATTATAATCTCGTTGTGTTCGATCTGTGGCATTTGTCTTCCTCTTACCATAAGCTCTATCTACTGTGTTTTGATTCCAGCCAATCACGAGTCAACACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.27

Weight (kDa)

7.67

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 187
AciI CCGC 2 cut(s) 140, 185
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 2 cut(s) 76, 342
AluI AGCT 2 cut(s) 76, 342
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 238
AvaII GGWCC 1 cut(s) 238
BauI CACGAG 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 317
BccI CCATC 2 cut(s) 134, 157
BfaI CTAG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 153, 240
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 153, 240
Bsh1236I CGCG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 2 cut(s) 140, 185
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 6
BsrBI CCGCTC 1 cut(s) 142
BsrI ACTGG 2 cut(s) 153, 240
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 309
BssSI CACGAG 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 280, 353
BstC8I GCNNGC 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 1 cut(s) 312
BstMBI GATC 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 68
BstUI CGCG 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 238
CviAII CATG 3 cut(s) 31, 65, 242
CviJI RGCY 4 cut(s) 76, 247, 342, 368
CviKI_1 RGCY 4 cut(s) 76, 247, 342, 368
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 34, 68, 245
FaiI YATR 9 cut(s) 32, 41, 66, 98, 177, 243, 273, 293, 338
FaqI GGGAC 1 cut(s) 141
FatI CATG 3 cut(s) 30, 64, 241
FauI CCCGC 1 cut(s) 147
FblI GTMKAC 1 cut(s) 171
FokI GGATG 1 cut(s) 136
FspBI CTAG 1 cut(s) 20
Hin1II CATG 3 cut(s) 34, 68, 245
HincII GTYRAC 2 cut(s) 172, 381
HindII GTYRAC 2 cut(s) 172, 381
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 361, 377
Hpy166II GTNNAC 2 cut(s) 172, 381
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 2 cut(s) 172, 381
HpyCH4III ACNGT 2 cut(s) 280, 353
HpyCH4V TGCA 1 cut(s) 288
Hsp92II CATG 3 cut(s) 34, 68, 245
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 4 cut(s) 75, 166, 221, 378
MaeI CTAG 1 cut(s) 20
MalI GATC 1 cut(s) 311
MbiI CCGCTC 1 cut(s) 142
MboI GATC 1 cut(s) 309
MboII GAAGA 2 cut(s) 275, 317
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 2 cut(s) 133, 339
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 29
MvnI CGCG 1 cut(s) 187
NcoI CCATGG 1 cut(s) 241
NdeII GATC 1 cut(s) 309
NlaIII CATG 3 cut(s) 34, 68, 245
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 68
PciI ACATGT 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 361
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PscI ACATGT 1 cut(s) 64
PsiI TTATAA 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 29
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 60
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 386
SetI ASST 3 cut(s) 78, 86, 344
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 1 cut(s) 57
SsiI CCGC 2 cut(s) 140, 185
SspI AATATT 1 cut(s) 13
SspMI CTAG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 280, 353
TaqI TCGA 3 cut(s) 171, 193, 308
TasI AATT 1 cut(s) 57
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TspDTI ATGAA 3 cut(s) 85, 180, 288
VpaK11BI GGWCC 1 cut(s) 238
XceI RCATGY 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.