Rh4CG230200

Protein ABCI12, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002836
Physical Location & Seq
Forward (+)
46889648 .. 46895835
6188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG230200.1

Sequence Viewer

Length: 1155 bp
ATGAGCTTCACACATCGCTCCATCGCAACGGTAACATTTCCCTATTTCCCACTAAACCCTCCTACTCCCAAAACCCCAGACTTCACTCCCCTTCGTTCATTCAACAACAACAACAACAACAACAAAACCCTTATTTCTGTAAACCCTAAATCAAGCTTCCGAATTAGAGCTTCCGCCGCCAGCGATAATAGCCAACCGCCGTGGTGGGCGAACCTGTTGCCCGCCCAAGCTTTGGGATCCGATAAAGTTCTCAGATTGATCTCCGGTGCCACCGCTAGCCCCATTGGCCAGTACGTGTCGGAACCCGTCACTTTTCTTCATTCTCTCGACCCCAGAGTCAAATTGGTTTGGCTTTTGGCTCTAGTTGTTTTACCAGCGAGGTCACACATAATACTTCGTTTTGGATTAGTTGTTTACTTGGCCATTTTGTCAATATGGGTTCTGCCGAGACATGCGTGGATGGATCAATTGGGAAGAGTGTCTTTAATTTCTGGACTTTTGTTCATTATGCTAGGGCTGGGTGCAGATGGCGCACCAGCCCTTGTTCAGTTGAGAACTCCTCCTCCTGCAATCACAGGATTATCAAATCTTCCTGCATCTCTGGCAGGCTACTCATATTTAATTTTTAAGCTAGGACCAATACAGTTTACAAGGAAGGGCTTGTCTGTAGCAAGCACAGCTGCTTGTTTAACCTTTACGGTTTTCCAAAGTGCGAGCCTTTGCCTAACAACCACAACCCCCGAAGAACTTGCATTTGCCTTGCGGTGGTTTATGCTCCCTTTGACAAATCTTGGAGTTCCAGTGGCTGAAGTTATTCTTACACTCATGCTTTCGTTGAGGTTCATCAGTCTTGTGTTTGATGAGGTTCGTAATGTTGCATTGGGGATTGTATCTCGTAGGATAGACTGGCAACAGTTAACAATGGTGGAGACAATTGATGTTTTCTTTGCCTACTTCCGTAGGATCTTCAAAAATATTTTTAGCCACGCAGAGCAGATATCACAGGCGATGATTGCAAGAGGTTTCAGAGGGGACTGCAACACGCATAAAATGTACCTGTTATCAGATCCATCCATTGGTATAGCAGATGTTGTTTCTTTGTTATGCCTGGCTGGTATTATAGGTGCTGCGGTTTGGTCGGACTTTCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CbiQ

Protein Analysis

384

Amino Acids

42.27

Weight (kDa)

9.72

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CbiQ PF02361 104 - 346 5e-19 Cobalt transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 266
AccB7I CCANNNNNTGG 2 cut(s) 232, 1076
AciI CCGC 7 cut(s) 174, 177, 197, 222, 273, 763, 1130
AclWI GGATC 5 cut(s) 231, 244, 471, 971, 1061
AcoI YGGCCR 2 cut(s) 286, 420
AcuI CTGAAG 1 cut(s) 828
AfaI GTAC 2 cut(s) 293, 1055
AfiI CCNNNNNNNGG 3 cut(s) 232, 765, 1076
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 2 cut(s) 103, 970
AjnI CCWGG 1 cut(s) 1107
AloI GAACNNNNNNTCC 2 cut(s) 547, 579
AluBI AGCT 6 cut(s) 6, 156, 170, 230, 631, 680
AluI AGCT 6 cut(s) 6, 156, 170, 230, 631, 680
Alw26I GTCTC 2 cut(s) 442, 923
AlwI GGATC 5 cut(s) 231, 244, 471, 971, 1061
AlwNI CAGNNNCTG 1 cut(s) 806
AoxI GGCC 2 cut(s) 286, 420
ApeKI GCWGC 2 cut(s) 680, 1127
Asp700I GAANNNNTTC 1 cut(s) 813
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 635
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 635
BalI TGGCCA 2 cut(s) 288, 422
BamHI GGATCC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 667, 1114
BccI CCATC 4 cut(s) 29, 454, 521, 1078
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 4 cut(s) 199, 233, 731, 765
BciT130I CCWGG 1 cut(s) 1109
BcoDI GTCTC 2 cut(s) 442, 923
BfaI CTAG 4 cut(s) 276, 362, 512, 632
BfmI CTRYAG 1 cut(s) 666
BglI GCCNNNNNGGC 1 cut(s) 285
BisI GCNGC 3 cut(s) 177, 681, 1128
BlsI GCNGC 3 cut(s) 178, 682, 1129
Bme1390I CCNGG 1 cut(s) 1109
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 635
BmiI GGNNCC 3 cut(s) 238, 268, 303
BmrFI CCNGG 1 cut(s) 1109
BmsI GCATC 1 cut(s) 605
BmtI GCTAGC 1 cut(s) 279
BplI GAGNNNNNCTC 2 cut(s) 544, 576
BsaAI YACGTR 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 4 cut(s) 547, 577, 786, 816
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 765, 1076
Bse1I ACTGG 3 cut(s) 289, 800, 911
BseBI CCWGG 1 cut(s) 1109
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 465, 1070
BseLI CCNNNNNNNGG 3 cut(s) 232, 765, 1076
BseMII CTCAG 1 cut(s) 265
BseNI ACTGG 3 cut(s) 289, 800, 911
BseRI GAGGAG 2 cut(s) 549, 552
BseXI GCAGC 2 cut(s) 667, 1114
BseYI CCCAGC 1 cut(s) 517
BsgI GTGCAG 1 cut(s) 543
BshFI GGCC 2 cut(s) 288, 422
BshNI GGYRCC 1 cut(s) 266
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 1046
BslI CCNNNNNNNGG 3 cut(s) 232, 765, 1076
BsmAI GTCTC 2 cut(s) 442, 923
BsmFI GGGAC 1 cut(s) 1046
BsnI GGCC 2 cut(s) 288, 422
Bsp143I GATC 5 cut(s) 236, 258, 463, 963, 1066
BspACI CCGC 7 cut(s) 174, 177, 197, 222, 273, 763, 1130
BspANI GGCC 2 cut(s) 288, 422
BspCNI CTCAG 1 cut(s) 264
BspLI GGNNCC 3 cut(s) 238, 268, 303
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 5 cut(s) 231, 244, 471, 971, 1061
BspT107I GGYRCC 1 cut(s) 266
BsrI ACTGG 3 cut(s) 289, 800, 911
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 5 cut(s) 236, 258, 463, 963, 1066
Bst2UI CCWGG 1 cut(s) 1109
Bst4CI ACNGT 4 cut(s) 31, 645, 700, 915
Bst6I CTCTTC 1 cut(s) 469
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 6 cut(s) 181, 222, 277, 607, 673, 715
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 465, 1070
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 5 cut(s) 239, 261, 466, 966, 1069
BstMAI GTCTC 2 cut(s) 442, 923
BstMBI GATC 5 cut(s) 236, 258, 463, 963, 1066
BstMWI GCNNNNNNNGC 7 cut(s) 176, 189, 285, 530, 602, 677, 1013
BstNI CCWGG 1 cut(s) 1109
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 1107
BstSFI CTRYAG 1 cut(s) 666
BstV1I GCAGC 2 cut(s) 667, 1114
BstX2I RGATCY 3 cut(s) 236, 963, 1066
BstYI RGATCY 3 cut(s) 236, 963, 1066
BsuRI GGCC 2 cut(s) 288, 422
BtgI CCRYGG 1 cut(s) 200
BtgZI GCGATG 2 cut(s) 7, 1022
BtsCI GGATG 2 cut(s) 465, 1070
BtsIMutI CAGTG 1 cut(s) 807
Cac8I GCNNGC 6 cut(s) 181, 222, 277, 607, 673, 715
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 635
Csp6I GTAC 2 cut(s) 292, 1054
CspCI CAANNNNNGTGG 2 cut(s) 182, 217
CviAII CATG 2 cut(s) 452, 826
CviQI GTAC 2 cut(s) 292, 1054
DdeI CTNAG 1 cut(s) 251
DpnI GATC 5 cut(s) 238, 260, 465, 965, 1068
DpnII GATC 5 cut(s) 236, 258, 463, 963, 1066
DrdI GACNNNNNNGTC 1 cut(s) 335
DseDI GACNNNNNNGTC 1 cut(s) 335
EaeI YGGCCR 2 cut(s) 286, 420
Eam1104I CTCTTC 1 cut(s) 469
EarI CTCTTC 1 cut(s) 469
EciI GGCGGA 1 cut(s) 163
Eco32I GATATC 1 cut(s) 999
Eco47I GGWCC 1 cut(s) 635
Eco57I CTGAAG 1 cut(s) 828
EcoRII CCWGG 1 cut(s) 1107
EcoRV GATATC 1 cut(s) 999
FaeI CATG 2 cut(s) 455, 829
FalI AAGNNNNNCTT 4 cut(s) 466, 498, 801, 833
FaqI GGGAC 1 cut(s) 1046
FatI CATG 2 cut(s) 451, 825
FauI CCCGC 1 cut(s) 229
Fnu4HI GCNGC 3 cut(s) 177, 681, 1128
FokI GGATG 2 cut(s) 472, 1057
Fsp4HI GCNGC 3 cut(s) 177, 681, 1128
FspBI CTAG 4 cut(s) 276, 362, 512, 632
GlaI GCGC 1 cut(s) 532
GluI GCNGC 3 cut(s) 177, 681, 1128
GsaI CCCAGC 1 cut(s) 521
HaeIII GGCC 2 cut(s) 288, 422
HapII CCGG 1 cut(s) 264
HhaI GCGC 1 cut(s) 533
Hin1II CATG 2 cut(s) 455, 829
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HincII GTYRAC 1 cut(s) 918
HindII GTYRAC 1 cut(s) 918
HindIII AAGCTT 2 cut(s) 154, 228
HinfI GANTC 1 cut(s) 336
HpaI GTTAAC 1 cut(s) 918
HpaII CCGG 1 cut(s) 264
Hpy166II GTNNAC 4 cut(s) 142, 415, 648, 918
Hpy188I TCNGA 7 cut(s) 161, 241, 254, 301, 1028, 1066, 1141
Hpy188III TCNNGA 2 cut(s) 326, 492
Hpy8I GTNNAC 4 cut(s) 142, 415, 648, 918
HpyAV CCTTC 2 cut(s) 101, 649
HpyCH4III ACNGT 4 cut(s) 31, 645, 700, 915
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 7 cut(s) 524, 569, 596, 752, 878, 1016, 1038
HpyF10VI GCNNNNNNNGC 7 cut(s) 176, 189, 285, 530, 602, 677, 1013
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 2 cut(s) 455, 829
HspAI GCGC 1 cut(s) 531
KspAI GTTAAC 1 cut(s) 918
Kzo9I GATC 5 cut(s) 236, 258, 463, 963, 1066
LmnI GCTCC 2 cut(s) 23, 780
Lsp1109I GCAGC 2 cut(s) 667, 1114
LweI GCATC 1 cut(s) 605
MaeI CTAG 4 cut(s) 276, 362, 512, 632
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 31, 307, 381
MalI GATC 5 cut(s) 238, 260, 465, 965, 1068
MboI GATC 5 cut(s) 236, 258, 463, 963, 1066
MboII GAAGA 5 cut(s) 308, 486, 581, 755, 958
MfeI CAATTG 2 cut(s) 467, 933
MflI RGATCY 3 cut(s) 236, 963, 1066
MlsI TGGCCA 2 cut(s) 288, 422
MluCI AATT 6 cut(s) 162, 341, 467, 486, 621, 933
MluNI TGGCCA 2 cut(s) 288, 422
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 2 cut(s) 279, 1119
MnlI CCTC 8 cut(s) 69, 372, 570, 573, 831, 856, 1013, 1022
Mox20I TGGCCA 2 cut(s) 288, 422
MroXI GAANNNNTTC 1 cut(s) 813
MscI TGGCCA 2 cut(s) 288, 422
MseI TTAA 5 cut(s) 485, 620, 627, 689, 917
Msp20I TGGCCA 2 cut(s) 288, 422
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 1109
MunI CAATTG 2 cut(s) 467, 933
MvaI CCWGG 1 cut(s) 1109
MwoI GCNNNNNNNGC 7 cut(s) 176, 189, 285, 530, 602, 677, 1013
NdeII GATC 5 cut(s) 236, 258, 463, 963, 1066
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 2 cut(s) 455, 829
NlaIV GGNNCC 3 cut(s) 238, 268, 303
NmeAIII GCCGAG 1 cut(s) 471
NmuCI GTSAC 2 cut(s) 307, 381
NspI RCATGY 1 cut(s) 455
PdmI GAANNNNTTC 1 cut(s) 813
PflMI CCANNNNNTGG 2 cut(s) 232, 1076
PkrI GCNGC 3 cut(s) 178, 682, 1129
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
Ppu21I YACGTR 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 1107
PspFI CCCAGC 1 cut(s) 517
PspGI CCWGG 1 cut(s) 1107
PspN4I GGNNCC 3 cut(s) 238, 268, 303
PspPI GGNCC 1 cut(s) 635
PstNI CAGNNNCTG 1 cut(s) 806
PsuI RGATCY 3 cut(s) 236, 963, 1066
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 2 cut(s) 293, 1055
RsaNI GTAC 2 cut(s) 292, 1054
SaqAI TTAA 5 cut(s) 485, 620, 627, 689, 917
SatI GCNGC 3 cut(s) 177, 681, 1128
Sau3AI GATC 5 cut(s) 236, 258, 463, 963, 1066
Sau96I GGNCC 1 cut(s) 635
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 1 cut(s) 1109
SfaNI GCATC 1 cut(s) 605
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 1 cut(s) 635
Sse9I AATT 6 cut(s) 162, 341, 467, 486, 621, 933
SsiI CCGC 7 cut(s) 174, 177, 197, 222, 273, 763, 1130
SspI AATATT 1 cut(s) 976
SspMI CTAG 4 cut(s) 276, 362, 512, 632
StyD4I CCNGG 1 cut(s) 1107
TaaI ACNGT 4 cut(s) 31, 645, 700, 915
TaiI ACGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 327
TasI AATT 6 cut(s) 162, 341, 467, 486, 621, 933
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 5 cut(s) 485, 620, 627, 689, 917
Tru9I TTAA 5 cut(s) 485, 620, 627, 689, 917
TscAI CASTG 1 cut(s) 807
TseFI GTSAC 2 cut(s) 307, 381
TseI GCWGC 2 cut(s) 680, 1127
Tsp45I GTSAC 2 cut(s) 307, 381
TspDTI ATGAA 4 cut(s) 87, 308, 493, 832
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 1 cut(s) 807
Van91I CCANNNNNTGG 2 cut(s) 232, 1076
VpaK11BI GGWCC 1 cut(s) 635
XceI RCATGY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 4 cut(s) 276, 362, 512, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.