Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000913.1

Orthogroup ID

OG0002836

Physical Location & Seq

Genomic Coordinates Forward (+)

10605 .. 17880

Gene Structure 7276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000913.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atgagcttcacacatcgctccatcgcaacggtaacatttccctatttcccactaaaccctcctactcccaaaaccccaaacttcactccccttcgttcattcaacaacaacaacaaaacccttatttctgtaaaccctaaatcaagcttccgaattagagcttccgccgccagcgataatatccaaccgccgtggtgggcgaacctgttgcccgcccaagctttgggatccgataaagttctcagattgatctccggtgccaccgctagccccattggccagtacgtgtcggaacccgtcacttttcttcattctctcgaccccagagtcaaactggtttggcttttggctctagttgtgttaccagcgaggtcacacataatacttcgttttggattagttgtttacttggccattttgtcaatatgggttctgccaagacatgcgtggatggatcaattgggaagagtgtctttaatttctggacttttgttcattatgctagggctgggtgcagatggcgcaccagcccttgttcagttgagaactcctcctcctgcaatcacaggattatcaaatcttcctgcatctctggcaggctactcatatttaatttttaagctaggaccaatacagtttacaaggaagggcttgtctgtagcaagcacagctgcttgtttaacctttacggttttccaaagtgcgagcctttgcctaacaaccacaacccccgaagaacttgcatttgccttgcggtggtttatgctccctttgacaaatcttggagttccagtggctgaagttattcttacactcatgctttcgttgaggttcatcagtcttgtgtttgatgaggttcgtaatgttgcattggggattgtatctcgtaggatagactggcaacagttaacaatggtggagacaattgatgttttctttgcctacttccgtaggatcttcaaaaatatttttagccacgcagagcagatttcacaggcgatgattgcaagaggtttcagaggggactgcaacacgcataaaatgtacctgttatcagatccatccattggtatagcagatgttgtttctttgttatgcctggctggtattataggtgctgcggctatgctggctaaaccaaaacaggcggataactacttacagtggggtggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CbiQ

Protein Analysis

391

Amino Acids

42.94

Weight (kDa)

9.89

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21580
fragaria_vesca	FvH4_4g14170 FvH4_4g14170 FvH4_4g14170 FvH4_4g14170
malus_domestica	MD13G1180000.v1.1
prunus_persica	Prupe.1G148500_v2.0.a1
pyrus_communis	pycom13g15550
rosa_chinensis	RchiOBHm_Chr1g0356001 RchiOBHm_Chr2g0086241 RchiOBHm_Chr4g0419051 RchiOBHm_Chr5g0045591 RchiOBHm_Chr5g0064291
rosa_laevigata	RLG00000007829 RLG00000023906
rosa_multiflora	Rmu_sc0000048.1_g000009 Rmu_sc0000831.1_g000030 Rmu_sc0000913.1_g000005 Rmu_sc0015926.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362110 Rroxscaffold_7G00165560
rosa_rugosa	Rorug04G0095000 Rorug04G0156700 Rorug04G0156800 Rorug04G0156900
rosa_samantha	Rh1DG103700 Rh2CG432800 Rh2CG585000 Rh4AG218300 Rh4BG219800 Rh4CG230200 Rh4DG216800 Rh5BG312800 Rh5DG323400 Rh7BG246100 Rh7CG235700 Rh7CG310900
rosa_wichuraiana	Rw4G018660 Rw5G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	2 cut(s)	223, 1067
AciI	CCGC	8 cut(s)	165, 168, 188, 213, 264, 754, 1121, 1148
AclWI	GGATC	5 cut(s)	222, 235, 462, 962, 1052
AcoI	YGGCCR	2 cut(s)	277, 411
AcuI	CTGAAG	1 cut(s)	819
AfaI	GTAC	2 cut(s)	284, 1046
AfiI	CCNNNNNNNGG	3 cut(s)	223, 756, 1067
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	103, 961
AjnI	CCWGG	1 cut(s)	1098
AloI	GAACNNNNNNTCC	2 cut(s)	538, 570
AluBI	AGCT	6 cut(s)	6, 147, 161, 221, 622, 671
AluI	AGCT	6 cut(s)	6, 147, 161, 221, 622, 671
Alw26I	GTCTC	1 cut(s)	914
AlwI	GGATC	5 cut(s)	222, 235, 462, 962, 1052
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	2 cut(s)	277, 411
ApeKI	GCWGC	2 cut(s)	671, 1118
Asp700I	GAANNNNTTC	1 cut(s)	804
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	626
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	626
BalI	TGGCCA	2 cut(s)	279, 413
BamHI	GGATCC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	658, 1105
BccI	CCATC	4 cut(s)	29, 445, 512, 1069
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	4 cut(s)	190, 224, 722, 756
BciT130I	CCWGG	1 cut(s)	1100
BcoDI	GTCTC	1 cut(s)	914
BfaI	CTAG	4 cut(s)	267, 353, 503, 623
BfmI	CTRYAG	1 cut(s)	657
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	4 cut(s)	168, 672, 1119, 1122
BlsI	GCNGC	4 cut(s)	169, 673, 1120, 1123
Bme1390I	CCNGG	1 cut(s)	1100
Bme18I	GGWCC	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	626
BmiI	GGNNCC	3 cut(s)	229, 259, 294
BmrFI	CCNGG	1 cut(s)	1100
BmsI	GCATC	1 cut(s)	596
BmtI	GCTAGC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	535, 567
BsaAI	YACGTR	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	4 cut(s)	538, 568, 777, 807
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 756, 1067
Bse1I	ACTGG	4 cut(s)	280, 339, 791, 902
BseBI	CCWGG	1 cut(s)	1100
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	2 cut(s)	456, 1061
BseLI	CCNNNNNNNGG	3 cut(s)	223, 756, 1067
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	4 cut(s)	280, 339, 791, 902
BseRI	GAGGAG	2 cut(s)	540, 543
BseXI	GCAGC	2 cut(s)	658, 1105
BseYI	CCCAGC	1 cut(s)	508
BsgI	GTGCAG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	279, 413
BshNI	GGYRCC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	1037
BslI	CCNNNNNNNGG	3 cut(s)	223, 756, 1067
BsmAI	GTCTC	1 cut(s)	914
BsmFI	GGGAC	1 cut(s)	1037
BsnI	GGCC	2 cut(s)	279, 413
Bsp143I	GATC	5 cut(s)	227, 249, 454, 954, 1057
BspACI	CCGC	8 cut(s)	165, 168, 188, 213, 264, 754, 1121, 1148
BspANI	GGCC	2 cut(s)	279, 413
BspCNI	CTCAG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	229, 259, 294
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	5 cut(s)	222, 235, 462, 962, 1052
BspT107I	GGYRCC	1 cut(s)	257
BsrI	ACTGG	4 cut(s)	280, 339, 791, 902
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	5 cut(s)	227, 249, 454, 954, 1057
Bst2UI	CCWGG	1 cut(s)	1100
Bst4CI	ACNGT	5 cut(s)	31, 636, 691, 906, 1164
Bst6I	CTCTTC	1 cut(s)	460
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	7 cut(s)	172, 213, 268, 598, 664, 706, 1131
BstDEI	CTNAG	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	456, 1061
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	5 cut(s)	230, 252, 457, 957, 1060
BstMAI	GTCTC	1 cut(s)	914
BstMBI	GATC	5 cut(s)	227, 249, 454, 954, 1057
BstMWI	GCNNNNNNNGC	7 cut(s)	167, 276, 521, 593, 668, 1004, 1130
BstNI	CCWGG	1 cut(s)	1100
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	1098
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	2 cut(s)	658, 1105
BstX2I	RGATCY	3 cut(s)	227, 954, 1057
BstYI	RGATCY	3 cut(s)	227, 954, 1057
BsuRI	GGCC	2 cut(s)	279, 413
BtgI	CCRYGG	1 cut(s)	191
BtgZI	GCGATG	2 cut(s)	7, 1013
BtsCI	GGATG	2 cut(s)	456, 1061
BtsIMutI	CAGTG	2 cut(s)	798, 1169
Cac8I	GCNNGC	7 cut(s)	172, 213, 268, 598, 664, 706, 1131
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	626
Csp6I	GTAC	2 cut(s)	283, 1045
CspCI	CAANNNNNGTGG	2 cut(s)	173, 208
CviAII	CATG	2 cut(s)	443, 817
CviQI	GTAC	2 cut(s)	283, 1045
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	5 cut(s)	229, 251, 456, 956, 1059
DpnII	GATC	5 cut(s)	227, 249, 454, 954, 1057
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	2 cut(s)	277, 411
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
EciI	GGCGGA	2 cut(s)	154, 1163
Eco47I	GGWCC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	819
EcoRII	CCWGG	1 cut(s)	1098
FaeI	CATG	2 cut(s)	446, 820
FalI	AAGNNNNNCTT	4 cut(s)	457, 489, 792, 824
FaqI	GGGAC	1 cut(s)	1037
FatI	CATG	2 cut(s)	442, 816
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	168, 672, 1119, 1122
FokI	GGATG	2 cut(s)	463, 1048
Fsp4HI	GCNGC	4 cut(s)	168, 672, 1119, 1122
FspBI	CTAG	4 cut(s)	267, 353, 503, 623
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	4 cut(s)	168, 672, 1119, 1122
GsaI	CCCAGC	1 cut(s)	512
HaeIII	GGCC	2 cut(s)	279, 413
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	2 cut(s)	446, 820
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	1 cut(s)	909
HindII	GTYRAC	1 cut(s)	909
HindIII	AAGCTT	2 cut(s)	145, 219
HinfI	GANTC	1 cut(s)	327
HpaI	GTTAAC	1 cut(s)	909
HpaII	CCGG	1 cut(s)	255
Hpy166II	GTNNAC	4 cut(s)	133, 406, 639, 909
Hpy188I	TCNGA	6 cut(s)	152, 232, 245, 292, 1019, 1057
Hpy188III	TCNNGA	2 cut(s)	317, 483
Hpy8I	GTNNAC	4 cut(s)	133, 406, 639, 909
HpyAV	CCTTC	2 cut(s)	101, 640
HpyCH4III	ACNGT	5 cut(s)	31, 636, 691, 906, 1164
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	7 cut(s)	515, 560, 587, 743, 869, 1007, 1029
HpyF10VI	GCNNNNNNNGC	7 cut(s)	167, 276, 521, 593, 668, 1004, 1130
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	446, 820
HspAI	GCGC	1 cut(s)	522
KspAI	GTTAAC	1 cut(s)	909
Kzo9I	GATC	5 cut(s)	227, 249, 454, 954, 1057
LmnI	GCTCC	2 cut(s)	23, 771
Lsp1109I	GCAGC	2 cut(s)	658, 1105
LweI	GCATC	1 cut(s)	596
MaeI	CTAG	4 cut(s)	267, 353, 503, 623
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	4 cut(s)	31, 298, 360, 372
MalI	GATC	5 cut(s)	229, 251, 456, 956, 1059
MboI	GATC	5 cut(s)	227, 249, 454, 954, 1057
MboII	GAAGA	5 cut(s)	299, 477, 572, 746, 949
MfeI	CAATTG	2 cut(s)	458, 924
MflI	RGATCY	3 cut(s)	227, 954, 1057
MlsI	TGGCCA	2 cut(s)	279, 413
MluCI	AATT	5 cut(s)	153, 458, 477, 612, 924
MluNI	TGGCCA	2 cut(s)	279, 413
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	2 cut(s)	208, 270
MnlI	CCTC	8 cut(s)	69, 363, 561, 564, 822, 847, 1004, 1013
Mox20I	TGGCCA	2 cut(s)	279, 413
MroXI	GAANNNNTTC	1 cut(s)	804
MscI	TGGCCA	2 cut(s)	279, 413
MseI	TTAA	5 cut(s)	476, 611, 618, 680, 908
Msp20I	TGGCCA	2 cut(s)	279, 413
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	1100
MunI	CAATTG	2 cut(s)	458, 924
MvaI	CCWGG	1 cut(s)	1100
MwoI	GCNNNNNNNGC	7 cut(s)	167, 276, 521, 593, 668, 1004, 1130
NdeII	GATC	5 cut(s)	227, 249, 454, 954, 1057
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	446, 820
NlaIV	GGNNCC	3 cut(s)	229, 259, 294
NmuCI	GTSAC	2 cut(s)	298, 372
NspI	RCATGY	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	804
PflMI	CCANNNNNTGG	2 cut(s)	223, 1067
PkrI	GCNGC	4 cut(s)	169, 673, 1120, 1123
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Ppu21I	YACGTR	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	1098
PspFI	CCCAGC	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	1098
PspN4I	GGNNCC	3 cut(s)	229, 259, 294
PspPI	GGNCC	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	3 cut(s)	227, 954, 1057
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	2 cut(s)	284, 1046
RsaNI	GTAC	2 cut(s)	283, 1045
SaqAI	TTAA	5 cut(s)	476, 611, 618, 680, 908
SatI	GCNGC	4 cut(s)	168, 672, 1119, 1122
Sau3AI	GATC	5 cut(s)	227, 249, 454, 954, 1057
Sau96I	GGNCC	1 cut(s)	626
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	1100
SfaNI	GCATC	1 cut(s)	596
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	1 cut(s)	626
Sse9I	AATT	5 cut(s)	153, 458, 477, 612, 924
SsiI	CCGC	8 cut(s)	165, 168, 188, 213, 264, 754, 1121, 1148
SspI	AATATT	1 cut(s)	967
SspMI	CTAG	4 cut(s)	267, 353, 503, 623
StyD4I	CCNGG	1 cut(s)	1098
TaaI	ACNGT	5 cut(s)	31, 636, 691, 906, 1164
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	318
TasI	AATT	5 cut(s)	153, 458, 477, 612, 924
TauI	GCSGC	2 cut(s)	170, 1124
Tru1I	TTAA	5 cut(s)	476, 611, 618, 680, 908
Tru9I	TTAA	5 cut(s)	476, 611, 618, 680, 908
TscAI	CASTG	2 cut(s)	798, 1169
TseFI	GTSAC	2 cut(s)	298, 372
TseI	GCWGC	2 cut(s)	671, 1118
Tsp45I	GTSAC	2 cut(s)	298, 372
TspDTI	ATGAA	4 cut(s)	87, 299, 484, 823
TspGWI	ACGGA	1 cut(s)	938
TspRI	CASTG	2 cut(s)	798, 1169
Van91I	CCANNNNNTGG	2 cut(s)	223, 1067
VpaK11BI	GGWCC	1 cut(s)	626
XceI	RCATGY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	2 cut(s)	331, 444
XmnI	GAANNNNTTC	1 cut(s)	804
XspI	CTAG	4 cut(s)	267, 353, 503, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.